RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 NISCHQ9Y2I1 1504 aa22■■□□□ 1.11
CD44-210ENST00000434472 CCDC180Q9P1Z9 1646 aa18.9■□□□□ 0.62
CD44-210ENST00000434472 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
CD44-210ENST00000434472 SHROOM4Q9ULL8 1493 aa18.38■□□□□ 0.53
CD44-210ENST00000434472 DCAF1Q9Y4B6 1507 aa18.21■□□□□ 0.51
CD44-210ENST00000434472 DCAF8L2P0C7V8 631 aa18.02■□□□□ 0.48
CD44-210ENST00000434472 SUPT5HO00267 1087 aaKnown RBP18.01■□□□□ 0.47
CD44-210ENST00000434472 MYO15BQ96JP2 1530 aa17.77■□□□□ 0.44
CD44-210ENST00000434472 CHIC1Q5VXU3 224 aa17.57■□□□□ 0.4
CD44-210ENST00000434472 ABCC9O60706 1549 aa17.53■□□□□ 0.4
CD44-210ENST00000434472 NACADO15069 1562 aa17.48■□□□□ 0.39
CD44-210ENST00000434472 SCRIBQ14160 1630 aa17.47■□□□□ 0.39
CD44-210ENST00000434472 RSF1Q96T23 1441 aaPredicted RBP17.31■□□□□ 0.36
CD44-210ENST00000434472 RB1CC1Q8TDY2 1594 aa17.19■□□□□ 0.34
CD44-210ENST00000434472 CECR2Q9BXF3 1484 aa17.04■□□□□ 0.32
CD44-210ENST00000434472 MROH2BQ7Z745 1585 aa17.02■□□□□ 0.31
CD44-210ENST00000434472 BAZ1AQ9NRL2 1556 aaPredicted RBP16.95■□□□□ 0.3
CD44-210ENST00000434472 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
CD44-210ENST00000434472 LOC105371045A0A1W2PR82 267 aa16.9■□□□□ 0.3
CD44-210ENST00000434472 WIZO95785 1651 aa16.9■□□□□ 0.3
CD44-210ENST00000434472 HRCP23327 699 aa16.83■□□□□ 0.28
CD44-210ENST00000434472 UNC13AQ9UPW8 1703 aa16.79■□□□□ 0.28
CD44-210ENST00000434472 PCGF6Q9BYE7 350 aa16.79■□□□□ 0.28
CD44-210ENST00000434472 SMARCA4P51532 1647 aa16.78■□□□□ 0.28
CD44-210ENST00000434472 TOP2AP11388 1531 aaKnown RBP16.77■□□□□ 0.27
CD44-210ENST00000434472 EIF4G1Q04637 1599 aaKnown RBP16.7■□□□□ 0.26
CD44-210ENST00000434472 TRIM26Q12899 539 aaPredicted RBP16.67■□□□□ 0.26
CD44-210ENST00000434472 BICRAQ9NZM4 1560 aa16.62■□□□□ 0.25
CD44-210ENST00000434472 SMARCA2P51531 1590 aa16.62■□□□□ 0.25
CD44-210ENST00000434472 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
CD44-210ENST00000434472 FAM9AQ8IZU1 332 aaPredicted RBP16.6■□□□□ 0.25
CD44-210ENST00000434472 PEG3Q9GZU2 1588 aa16.55■□□□□ 0.24
CD44-210ENST00000434472 PABPN1Q86U42 306 aaKnown RBP eCLIP16.49■□□□□ 0.23
CD44-210ENST00000434472 ABCC8Q09428 1581 aa16.43■□□□□ 0.22
CD44-210ENST00000434472 EEA1Q15075 1411 aa16.42■□□□□ 0.22
CD44-210ENST00000434472 ZEB1P37275 1124 aaPredicted RBP16.39■□□□□ 0.21
CD44-210ENST00000434472 ATAD2BQ9ULI0 1458 aa16.37■□□□□ 0.21
CD44-210ENST00000434472 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.2
CD44-210ENST00000434472 BAZ1BQ9UIG0 1483 aaKnown RBP16.32■□□□□ 0.2
CD44-210ENST00000434472 WRNQ14191 1432 aaPredicted RBP eCLIP16.29■□□□□ 0.2
CD44-210ENST00000434472 PPARGC1BQ86YN6 1023 aaKnown RBP16.28■□□□□ 0.2
CD44-210ENST00000434472 TNIKQ9UKE5 1360 aa16.28■□□□□ 0.2
CD44-210ENST00000434472 SOGA1O94964 1423 aa16.26■□□□□ 0.19
CD44-210ENST00000434472 CSRNP3Q8WYN3 585 aa16.26■□□□□ 0.19
CD44-210ENST00000434472 GOLGA3Q08378 1498 aa16.2■□□□□ 0.18
CD44-210ENST00000434472 CEP162Q5TB80 1403 aa16.2■□□□□ 0.18
CD44-210ENST00000434472 SYNJ1O43426 1573 aa16.16■□□□□ 0.18
CD44-210ENST00000434472 HMGXB3Q12766 1538 aa16.15■□□□□ 0.18
CD44-210ENST00000434472 RUSC2Q8N2Y8 1516 aa16.15■□□□□ 0.18
CD44-210ENST00000434472 CEP164Q9UPV0 1460 aa16.14■□□□□ 0.17
CD44-210ENST00000434472 KIF21BO75037 1637 aa16.13■□□□□ 0.17
CD44-210ENST00000434472 NCAPD3P42695 1498 aa16.13■□□□□ 0.17
CD44-210ENST00000434472 UBTFP17480 764 aaKnown RBP16.11■□□□□ 0.17
CD44-210ENST00000434472 TOP2BQ02880 1626 aa16.07■□□□□ 0.16
CD44-210ENST00000434472 BIVM-ERCC5R4GMW8 1640 aa16.04■□□□□ 0.16
CD44-210ENST00000434472 CLIP1P30622 1438 aa15.95■□□□□ 0.14
CD44-210ENST00000434472 CFTRP13569 1480 aa15.93■□□□□ 0.14
CD44-210ENST00000434472 ERICH3Q5RHP9 1530 aa15.91■□□□□ 0.14
CD44-210ENST00000434472 CCER1Q8TC90 406 aaPredicted RBP15.91■□□□□ 0.14
CD44-210ENST00000434472 RAPGEF2Q9Y4G8 1499 aa15.9■□□□□ 0.14
CD44-210ENST00000434472 VPS8Q8N3P4 1428 aa15.9■□□□□ 0.14
CD44-210ENST00000434472 CUX1P39880 1505 aa15.88■□□□□ 0.13
CD44-210ENST00000434472 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.86■□□□□ 0.13
CD44-210ENST00000434472 PRDM2Q13029 1718 aa15.86■□□□□ 0.13
CD44-210ENST00000434472 PRXQ9BXM0 1461 aa15.86■□□□□ 0.13
CD44-210ENST00000434472 KIF27Q86VH2 1401 aa15.84■□□□□ 0.13
CD44-210ENST00000434472 APLP2Q06481 763 aa15.82■□□□□ 0.12
CD44-210ENST00000434472 TTBK1Q5TCY1 1321 aaPredicted RBP15.8■□□□□ 0.12
CD44-210ENST00000434472 CADPSQ9ULU8 1353 aa15.77■□□□□ 0.12
CD44-210ENST00000434472 ARAP1Q96P48 1450 aa15.69■□□□□ 0.1
CD44-210ENST00000434472 CC2D2AQ9P2K1 1620 aa15.69■□□□□ 0.1
CD44-210ENST00000434472 CUX2O14529 1486 aa15.65■□□□□ 0.1
CD44-210ENST00000434472 RANGAP1P46060 587 aaPredicted RBP15.63■□□□□ 0.09
CD44-210ENST00000434472 IGF1RP08069 1367 aa15.62■□□□□ 0.09
CD44-210ENST00000434472 FGD5Q6ZNL6 1462 aa15.62■□□□□ 0.09
CD44-210ENST00000434472 HNRNPUL2Q1KMD3 747 aaKnown RBP15.61■□□□□ 0.09
CD44-210ENST00000434472 FANCD2Q9BXW9 1451 aa15.59■□□□□ 0.09
CD44-210ENST00000434472 ARHGAP35Q9NRY4 1499 aa15.58■□□□□ 0.08
CD44-210ENST00000434472 CARMIL1Q5VZK9 1371 aa15.57■□□□□ 0.08
CD44-210ENST00000434472 DNMBPQ6XZF7 1577 aa15.56■□□□□ 0.08
CD44-210ENST00000434472 DIEXFQ68CQ4 756 aaKnown RBP15.54■□□□□ 0.08
CD44-210ENST00000434472 MAP3K1Q13233 1512 aa15.53■□□□□ 0.08
CD44-210ENST00000434472 CLSPNQ9HAW4 1339 aa15.52■□□□□ 0.08
CD44-210ENST00000434472 RRBP1Q9P2E9 1410 aaKnown RBP15.52■□□□□ 0.08
CD44-210ENST00000434472 ZNF316A6NFI3 1004 aaPredicted RBP15.52■□□□□ 0.08
CD44-210ENST00000434472 ABCA10Q8WWZ4 1543 aa15.5■□□□□ 0.07
CD44-210ENST00000434472 KANK4Q5T7N3 995 aaPredicted RBP15.49■□□□□ 0.07
CD44-210ENST00000434472 TOPBP1Q92547 1522 aa15.48■□□□□ 0.07
CD44-210ENST00000434472 LAMC3Q9Y6N6 1575 aa15.48■□□□□ 0.07
CD44-210ENST00000434472 FHAD1B1AJZ9 1412 aa15.45■□□□□ 0.06
CD44-210ENST00000434472 CUL7Q14999 1698 aa15.44■□□□□ 0.06
CD44-210ENST00000434472 POLA1P09884 1462 aaPredicted RBP15.44■□□□□ 0.06
CD44-210ENST00000434472 TIAM1Q13009 1591 aa15.43■□□□□ 0.06
CD44-210ENST00000434472 CCNB3Q8WWL7 1395 aa15.43■□□□□ 0.06
CD44-210ENST00000434472 EFCAB5A4FU69 1503 aa15.41■□□□□ 0.06
CD44-210ENST00000434472 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
CD44-210ENST00000434472 NESP48681 1621 aa15.4■□□□□ 0.06
CD44-210ENST00000434472 DHX57Q6P158 1386 aaKnown RBP15.4■□□□□ 0.06
CD44-210ENST00000434472 PDS5BQ9NTI5 1447 aa15.37■□□□□ 0.05
CD44-210ENST00000434472 CENPBP07199 599 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms