RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 IGF1RP08069 1367 aa20.9■□□□□ 0.94
NCKIPSD-204ENST00000416649 PRXQ9BXM0 1461 aa20.89■□□□□ 0.94
NCKIPSD-204ENST00000416649 PRDM2Q13029 1718 aa20.89■□□□□ 0.93
NCKIPSD-204ENST00000416649 DHX57Q6P158 1386 aaKnown RBP20.88■□□□□ 0.93
NCKIPSD-204ENST00000416649 TRIM52Q96A61 297 aa20.87■□□□□ 0.93
NCKIPSD-204ENST00000416649 TDRD9Q8NDG6 1382 aaKnown RBP20.87■□□□□ 0.93
NCKIPSD-204ENST00000416649 ATP1B4Q9UN42 357 aaPredicted RBP20.86■□□□□ 0.93
NCKIPSD-204ENST00000416649 TOPBP1Q92547 1522 aa20.86■□□□□ 0.93
NCKIPSD-204ENST00000416649 CARMIL1Q5VZK9 1371 aa20.84■□□□□ 0.93
NCKIPSD-204ENST00000416649 POLA1P09884 1462 aaPredicted RBP20.84■□□□□ 0.93
NCKIPSD-204ENST00000416649 DDX10Q13206 875 aaKnown RBP20.83■□□□□ 0.92
NCKIPSD-204ENST00000416649 URB2Q14146 1524 aaKnown RBP20.81■□□□□ 0.92
NCKIPSD-204ENST00000416649 PDS5BQ9NTI5 1447 aa20.8■□□□□ 0.92
NCKIPSD-204ENST00000416649 VPS8Q8N3P4 1428 aa20.78■□□□□ 0.92
NCKIPSD-204ENST00000416649 DNMBPQ6XZF7 1577 aa20.76■□□□□ 0.91
NCKIPSD-204ENST00000416649 LAMC3Q9Y6N6 1575 aa20.76■□□□□ 0.91
NCKIPSD-204ENST00000416649 KANK4Q5T7N3 995 aaPredicted RBP20.74■□□□□ 0.91
NCKIPSD-204ENST00000416649 HIRIP3Q9BW71 556 aaPredicted RBP20.74■□□□□ 0.91
NCKIPSD-204ENST00000416649 ERICH3Q5RHP9 1530 aa20.73■□□□□ 0.91
NCKIPSD-204ENST00000416649 ARAP1Q96P48 1450 aa20.72■□□□□ 0.91
NCKIPSD-204ENST00000416649 KIF21AQ7Z4S6 1674 aa20.72■□□□□ 0.91
NCKIPSD-204ENST00000416649 IRX6P78412 446 aaPredicted RBP20.71■□□□□ 0.91
NCKIPSD-204ENST00000416649 DEKP35659 375 aaKnown RBP20.69■□□□□ 0.9
NCKIPSD-204ENST00000416649 CDK11AQ9UQ88 783 aaPredicted RBP20.69■□□□□ 0.9
NCKIPSD-204ENST00000416649 ARHGAP35Q9NRY4 1499 aa20.64■□□□□ 0.89
NCKIPSD-204ENST00000416649 FANCIQ9NVI1 1328 aa20.64■□□□□ 0.89
NCKIPSD-204ENST00000416649 ABCA10Q8WWZ4 1543 aa20.63■□□□□ 0.89
NCKIPSD-204ENST00000416649 AQRO60306 1485 aaKnown RBP eCLIP20.6■□□□□ 0.896e-7■■■■■ 27.8
NCKIPSD-204ENST00000416649 ANO8Q9HCE9 1232 aaPredicted RBP20.59■□□□□ 0.89
NCKIPSD-204ENST00000416649 NBR1Q14596 966 aa20.58■□□□□ 0.88
NCKIPSD-204ENST00000416649 ANP32CO43423 234 aa20.57■□□□□ 0.88
NCKIPSD-204ENST00000416649 ERCC6Q03468 1493 aa20.57■□□□□ 0.88
NCKIPSD-204ENST00000416649 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
NCKIPSD-204ENST00000416649 ARID3CA6NKF2 412 aa20.54■□□□□ 0.88
NCKIPSD-204ENST00000416649 FHOD3Q2V2M9 1422 aa20.54■□□□□ 0.88
NCKIPSD-204ENST00000416649 FBLN2P98095 1184 aa20.52■□□□□ 0.88
NCKIPSD-204ENST00000416649 MYT1LQ9UL68 1186 aa20.5■□□□□ 0.87
NCKIPSD-204ENST00000416649 SIN3AQ96ST3 1273 aa20.49■□□□□ 0.87
NCKIPSD-204ENST00000416649 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
NCKIPSD-204ENST00000416649 ZNF608Q9ULD9 1512 aaPredicted RBP20.47■□□□□ 0.87
NCKIPSD-204ENST00000416649 HNRNPUQ00839 825 aaKnown RBP eCLIP20.47■□□□□ 0.87
NCKIPSD-204ENST00000416649 PPP1R15AO75807 674 aaPredicted RBP20.46■□□□□ 0.87
NCKIPSD-204ENST00000416649 CCER2I3L3R5 266 aa20.43■□□□□ 0.86
NCKIPSD-204ENST00000416649 SALL2Q9Y467 1007 aaPredicted RBP20.39■□□□□ 0.85
NCKIPSD-204ENST00000416649 RAB3GAP2Q9H2M9 1393 aa20.38■□□□□ 0.85
NCKIPSD-204ENST00000416649 FAM50AQ14320 339 aaKnown RBP20.38■□□□□ 0.85
NCKIPSD-204ENST00000416649 TARBP1Q13395 1621 aaKnown RBP20.38■□□□□ 0.85
NCKIPSD-204ENST00000416649 WDR97A6NE52 1622 aa20.37■□□□□ 0.85
NCKIPSD-204ENST00000416649 CCDC136Q96JN2 1154 aa20.37■□□□□ 0.85
NCKIPSD-204ENST00000416649 ABCA5Q8WWZ7 1642 aa20.37■□□□□ 0.85
NCKIPSD-204ENST00000416649 CCNB3Q8WWL7 1395 aa20.36■□□□□ 0.85
NCKIPSD-204ENST00000416649 NOP58Q9Y2X3 529 aaKnown RBP20.35■□□□□ 0.85
NCKIPSD-204ENST00000416649 B4GALNT3Q6L9W6 998 aa20.35■□□□□ 0.85
NCKIPSD-204ENST00000416649 RTN4Q9NQC3 1192 aaKnown RBP20.34■□□□□ 0.85
NCKIPSD-204ENST00000416649 PAK3O75914 559 aaPredicted RBP20.33■□□□□ 0.85
NCKIPSD-204ENST00000416649 CUL7Q14999 1698 aa20.33■□□□□ 0.84
NCKIPSD-204ENST00000416649 CNGB1Q14028 1251 aaPredicted RBP20.3■□□□□ 0.84
NCKIPSD-204ENST00000416649 RRBP1Q9P2E9 1410 aaKnown RBP20.3■□□□□ 0.84
NCKIPSD-204ENST00000416649 PPP4R2Q9NY27 417 aa20.3■□□□□ 0.84
NCKIPSD-204ENST00000416649 CHMP7Q8WUX9 453 aaPredicted RBP20.29■□□□□ 0.84
NCKIPSD-204ENST00000416649 MAPKBP1O60336 1514 aa20.29■□□□□ 0.84
NCKIPSD-204ENST00000416649 RTL5Q5HYW3 569 aaPredicted RBP20.28■□□□□ 0.84
NCKIPSD-204ENST00000416649 PCF11O94913 1555 aaKnown RBP20.28■□□□□ 0.84
NCKIPSD-204ENST00000416649 FHAD1B1AJZ9 1412 aa20.27■□□□□ 0.84
NCKIPSD-204ENST00000416649 GRIN2BQ13224 1484 aa20.25■□□□□ 0.83
NCKIPSD-204ENST00000416649 IL27Q8NEV9 243 aa20.24■□□□□ 0.83
NCKIPSD-204ENST00000416649 PHLDB1Q86UU1 1377 aa20.24■□□□□ 0.83
NCKIPSD-204ENST00000416649 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.23■□□□□ 0.83
NCKIPSD-204ENST00000416649 IFT140Q96RY7 1462 aa20.23■□□□□ 0.83
NCKIPSD-204ENST00000416649 CTTNBP2Q8WZ74 1663 aa20.23■□□□□ 0.83
NCKIPSD-204ENST00000416649 SNAPC4Q5SXM2 1469 aa20.23■□□□□ 0.83
NCKIPSD-204ENST00000416649 SENP3-EIF4A1A0A087X0R7 540 aa20.23■□□□□ 0.83
NCKIPSD-204ENST00000416649 TIAM1Q13009 1591 aa20.22■□□□□ 0.83
NCKIPSD-204ENST00000416649 WDR62O43379 1518 aa20.22■□□□□ 0.83
NCKIPSD-204ENST00000416649 PBRM1Q86U86 1689 aa20.21■□□□□ 0.83
NCKIPSD-204ENST00000416649 LRRC9Q6ZRR7 1453 aa20.21■□□□□ 0.83
NCKIPSD-204ENST00000416649 MTUS2Q5JR59 1369 aa20.18■□□□□ 0.82
NCKIPSD-204ENST00000416649 SETD5Q9C0A6 1442 aa20.17■□□□□ 0.82
NCKIPSD-204ENST00000416649 ERICH6BQ5W0A0 696 aa20.16■□□□□ 0.82
NCKIPSD-204ENST00000416649 FMN1Q68DA7 1419 aa20.16■□□□□ 0.82
NCKIPSD-204ENST00000416649 CASKIN1Q8WXD9 1431 aa20.14■□□□□ 0.81
NCKIPSD-204ENST00000416649 EIF4G3O43432 1585 aaKnown RBP20.13■□□□□ 0.81
NCKIPSD-204ENST00000416649 ADAMTS12P58397 1594 aa20.13■□□□□ 0.81
NCKIPSD-204ENST00000416649 ANP32AP39687 249 aaKnown RBP20.13■□□□□ 0.81
NCKIPSD-204ENST00000416649 EFCAB5A4FU69 1503 aa20.13■□□□□ 0.81
NCKIPSD-204ENST00000416649 FAM9BQ8IZU0 186 aa20.12■□□□□ 0.81
NCKIPSD-204ENST00000416649 ZBTB47Q9UFB7 747 aaPredicted RBP20.11■□□□□ 0.81
NCKIPSD-204ENST00000416649 THOC2Q8NI27 1593 aaKnown RBP20.11■□□□□ 0.81
NCKIPSD-204ENST00000416649 FYCO1Q9BQS8 1478 aa20.09■□□□□ 0.81
NCKIPSD-204ENST00000416649 TONSLQ96HA7 1378 aa20.08■□□□□ 0.81
NCKIPSD-204ENST00000416649 IQGAP2Q13576 1575 aa20.08■□□□□ 0.8
NCKIPSD-204ENST00000416649 CCDC184Q52MB2 194 aa20.06■□□□□ 0.8
NCKIPSD-204ENST00000416649 IPO9Q96P70 1041 aaKnown RBP20.06■□□□□ 0.8
NCKIPSD-204ENST00000416649 CHIC2Q9UKJ5 165 aa20.05■□□□□ 0.8
NCKIPSD-204ENST00000416649 TIMELESSQ9UNS1 1208 aa20.05■□□□□ 0.8
NCKIPSD-204ENST00000416649 GRIN2AQ12879 1464 aa20.05■□□□□ 0.8
NCKIPSD-204ENST00000416649 NPM2Q86SE8 214 aaKnown RBP20.03■□□□□ 0.8
NCKIPSD-204ENST00000416649 SAMD9Q5K651 1589 aa20.03■□□□□ 0.8
NCKIPSD-204ENST00000416649 JPH4Q96JJ6 628 aa20.01■□□□□ 0.79
NCKIPSD-204ENST00000416649 CDK13Q14004 1512 aaKnown RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms