RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 RBM19Q9Y4C8 960 aaKnown RBP11.64□□□□□ -0.55
SNX13-201ENST00000409076 NPM2Q86SE8 214 aaKnown RBP11.63□□□□□ -0.55
SNX13-201ENST00000409076 B4GALNT3Q6L9W6 998 aa11.63□□□□□ -0.55
SNX13-201ENST00000409076 ZNF777Q9ULD5 760 aaPredicted RBP11.62□□□□□ -0.55
SNX13-201ENST00000409076 CDK11AQ9UQ88 783 aaPredicted RBP11.6□□□□□ -0.55
SNX13-201ENST00000409076 KIF21BO75037 1637 aa11.6□□□□□ -0.55
SNX13-201ENST00000409076 BCL11AQ9H165 835 aa11.59□□□□□ -0.55
SNX13-201ENST00000409076 ARAP1Q96P48 1450 aa11.57□□□□□ -0.56
SNX13-201ENST00000409076 FBLN2P98095 1184 aa11.56□□□□□ -0.56
SNX13-201ENST00000409076 MRS2Q9HD23 443 aa11.56□□□□□ -0.56
SNX13-201ENST00000409076 CUX2O14529 1486 aa11.55□□□□□ -0.56
SNX13-201ENST00000409076 CCDC184Q52MB2 194 aa11.53□□□□□ -0.56
SNX13-201ENST00000409076 KDM2AQ9Y2K7 1162 aa11.53□□□□□ -0.56
SNX13-201ENST00000409076 KIF27Q86VH2 1401 aa11.53□□□□□ -0.56
SNX13-201ENST00000409076 FHOD3Q2V2M9 1422 aa11.52□□□□□ -0.56
SNX13-201ENST00000409076 MTUS2Q5JR59 1369 aa11.52□□□□□ -0.57
SNX13-201ENST00000409076 ATAD2BQ9ULI0 1458 aa11.51□□□□□ -0.57
SNX13-201ENST00000409076 PHLDB1Q86UU1 1377 aa11.5□□□□□ -0.57
SNX13-201ENST00000409076 EIF4G1Q04637 1599 aaKnown RBP11.5□□□□□ -0.57
SNX13-201ENST00000409076 SETD5Q9C0A6 1442 aa11.49□□□□□ -0.57
SNX13-201ENST00000409076 SENP3Q9H4L4 574 aaPredicted RBP11.49□□□□□ -0.57
SNX13-201ENST00000409076 HSPA5P11021 654 aaKnown RBP11.49□□□□□ -0.57
SNX13-201ENST00000409076 PPP1R15AO75807 674 aaPredicted RBP11.48□□□□□ -0.57
SNX13-201ENST00000409076 RTN4Q9NQC3 1192 aaKnown RBP11.48□□□□□ -0.57
SNX13-201ENST00000409076 CARMIL1Q5VZK9 1371 aa11.48□□□□□ -0.57
SNX13-201ENST00000409076 WDR97A6NE52 1622 aa11.47□□□□□ -0.57
SNX13-201ENST00000409076 MSH5O43196 834 aa11.43□□□□□ -0.58
SNX13-201ENST00000409076 CLSPNQ9HAW4 1339 aa11.42□□□□□ -0.58
SNX13-201ENST00000409076 TDRD9Q8NDG6 1382 aaKnown RBP11.42□□□□□ -0.58
SNX13-201ENST00000409076 EIF4G2P78344 907 aaKnown RBP eCLIP11.42□□□□□ -0.58
SNX13-201ENST00000409076 ARHGAP35Q9NRY4 1499 aa11.42□□□□□ -0.58
SNX13-201ENST00000409076 CCDC136Q96JN2 1154 aa11.41□□□□□ -0.58
SNX13-201ENST00000409076 SLC4A1APQ9BWU0 796 aaKnown RBP11.4□□□□□ -0.58
SNX13-201ENST00000409076 LAS1LQ9Y4W2 734 aaKnown RBP11.39□□□□□ -0.59
SNX13-201ENST00000409076 RGL3Q3MIN7 710 aa11.39□□□□□ -0.59
SNX13-201ENST00000409076 L3MBTL2Q969R5 705 aa11.38□□□□□ -0.59
SNX13-201ENST00000409076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.38□□□□□ -0.59
SNX13-201ENST00000409076 UNC13AQ9UPW8 1703 aa11.37□□□□□ -0.59
SNX13-201ENST00000409076 RAD54L2Q9Y4B4 1467 aa11.36□□□□□ -0.59
SNX13-201ENST00000409076 RTL5Q5HYW3 569 aaPredicted RBP11.36□□□□□ -0.59
SNX13-201ENST00000409076 MYT1LQ9UL68 1186 aa11.36□□□□□ -0.59
SNX13-201ENST00000409076 IGF1RP08069 1367 aa11.36□□□□□ -0.59
SNX13-201ENST00000409076 DNAJC5BQ9UF47 199 aa11.36□□□□□ -0.59
SNX13-201ENST00000409076 ARXQ96QS3 562 aa11.35□□□□□ -0.59
SNX13-201ENST00000409076 SKAP1Q86WV1 359 aa11.35□□□□□ -0.59
SNX13-201ENST00000409076 C11orf95C9JLR9 678 aaPredicted RBP11.35□□□□□ -0.59
SNX13-201ENST00000409076 TMC1Q8TDI8 760 aa11.35□□□□□ -0.59
SNX13-201ENST00000409076 ZNF644Q9H582 1327 aaPredicted RBP11.34□□□□□ -0.59
SNX13-201ENST00000409076 CUX1P39880 1505 aa11.33□□□□□ -0.6
SNX13-201ENST00000409076 WASHC2AQ641Q2 1341 aa11.33□□□□□ -0.6
SNX13-201ENST00000409076 DEKP35659 375 aaKnown RBP11.32□□□□□ -0.6
SNX13-201ENST00000409076 RRBP1Q9P2E9 1410 aaKnown RBP11.32□□□□□ -0.6
SNX13-201ENST00000409076 PRXQ9BXM0 1461 aa11.31□□□□□ -0.6
SNX13-201ENST00000409076 BICRAQ9NZM4 1560 aa11.31□□□□□ -0.6
SNX13-201ENST00000409076 CCER2I3L3R5 266 aa11.3□□□□□ -0.6
SNX13-201ENST00000409076 PAK3O75914 559 aaPredicted RBP11.3□□□□□ -0.6
SNX13-201ENST00000409076 MPHOSPH9Q99550 1183 aa11.3□□□□□ -0.6
SNX13-201ENST00000409076 PPP4R2Q9NY27 417 aa11.29□□□□□ -0.6
SNX13-201ENST00000409076 ANP32AP39687 249 aaKnown RBP11.29□□□□□ -0.6
SNX13-201ENST00000409076 MAPKBP1O60336 1514 aa11.28□□□□□ -0.6
SNX13-201ENST00000409076 CC2D1BQ5T0F9 858 aaKnown RBP11.28□□□□□ -0.6
SNX13-201ENST00000409076 LRRC9Q6ZRR7 1453 aa11.28□□□□□ -0.6
SNX13-201ENST00000409076 PLIN1O60240 522 aa11.27□□□□□ -0.6
SNX13-201ENST00000409076 FGD5Q6ZNL6 1462 aa11.27□□□□□ -0.61
SNX13-201ENST00000409076 CCDC18Q5T9S5 1454 aa11.27□□□□□ -0.61
SNX13-201ENST00000409076 NBPF8Q3BBV2 869 aa11.26□□□□□ -0.61
SNX13-201ENST00000409076 ZBTB47Q9UFB7 747 aaPredicted RBP11.26□□□□□ -0.61
SNX13-201ENST00000409076 SLC4A3P48751 1232 aa11.25□□□□□ -0.61
SNX13-201ENST00000409076 PRKRIP1Q9H875 184 aaPredicted RBP11.25□□□□□ -0.61
SNX13-201ENST00000409076 TOP2BQ02880 1626 aa11.25□□□□□ -0.61
SNX13-201ENST00000409076 NESP48681 1621 aa11.24□□□□□ -0.61
SNX13-201ENST00000409076 NOP58Q9Y2X3 529 aaKnown RBP11.24□□□□□ -0.61
SNX13-201ENST00000409076 AKNAQ7Z591 1439 aa11.23□□□□□ -0.61
SNX13-201ENST00000409076 CARD11Q9BXL7 1154 aa11.23□□□□□ -0.61
SNX13-201ENST00000409076 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.23□□□□□ -0.61
SNX13-201ENST00000409076 DAXXQ9UER7 740 aaPredicted RBP11.23□□□□□ -0.61
SNX13-201ENST00000409076 FHAD1B1AJZ9 1412 aa11.23□□□□□ -0.61
SNX13-201ENST00000409076 DCAF11Q8TEB1 546 aa11.22□□□□□ -0.61
SNX13-201ENST00000409076 PKD2Q13563 968 aa11.21□□□□□ -0.61
SNX13-201ENST00000409076 AQRO60306 1485 aaKnown RBP eCLIP11.21□□□□□ -0.62
SNX13-201ENST00000409076 PTPRKQ15262 1439 aa11.2□□□□□ -0.62
SNX13-201ENST00000409076 CFDP1Q9UEE9 299 aaPredicted RBP11.2□□□□□ -0.62
SNX13-201ENST00000409076 CFTRP13569 1480 aa11.19□□□□□ -0.62
SNX13-201ENST00000409076 RGS3P49796 1198 aa11.19□□□□□ -0.62
SNX13-201ENST00000409076 EIF5BO60841 1220 aaKnown RBP11.19□□□□□ -0.62
SNX13-201ENST00000409076 EXOC6Q8TAG9 804 aa11.19□□□□□ -0.62
SNX13-201ENST00000409076 TIAM1Q13009 1591 aa11.18□□□□□ -0.62
SNX13-201ENST00000409076 KIF7Q2M1P5 1343 aa11.18□□□□□ -0.62
SNX13-201ENST00000409076 FGD6Q6ZV73 1430 aa11.18□□□□□ -0.62
SNX13-201ENST00000409076 CADPSQ9ULU8 1353 aa11.18□□□□□ -0.62
SNX13-201ENST00000409076 PCF11O94913 1555 aaKnown RBP11.17□□□□□ -0.62
SNX13-201ENST00000409076 TNNT2P45379 298 aaPredicted RBP11.17□□□□□ -0.62
SNX13-201ENST00000409076 NEUROD2Q15784 382 aa11.17□□□□□ -0.62
SNX13-201ENST00000409076 NEFMP07197 916 aa11.16□□□□□ -0.62
SNX13-201ENST00000409076 ST20-MTHFSA0A0A6YYL1 179 aa11.15□□□□□ -0.62
SNX13-201ENST00000409076 CDCA7LQ96GN5 454 aa11.15□□□□□ -0.62
SNX13-201ENST00000409076 ERICH3Q5RHP9 1530 aa11.14□□□□□ -0.63
SNX13-201ENST00000409076 FMN1Q68DA7 1419 aa11.14□□□□□ -0.63
SNX13-201ENST00000409076 PDS5BQ9NTI5 1447 aa11.13□□□□□ -0.63
SNX13-201ENST00000409076 FANCD2Q9BXW9 1451 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms