RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 CLSPNQ9HAW4 1339 aa6.91□□□□□ -1.3
SMAD4-202ENST00000398417 MTUS2Q5JR59 1369 aa6.9□□□□□ -1.3
SMAD4-202ENST00000398417 CADPSQ9ULU8 1353 aa6.9□□□□□ -1.3
SMAD4-202ENST00000398417 SETD5Q9C0A6 1442 aa6.89□□□□□ -1.31
SMAD4-202ENST00000398417 TDRD9Q8NDG6 1382 aaKnown RBP6.89□□□□□ -1.31
SMAD4-202ENST00000398417 FHOD3Q2V2M9 1422 aa6.89□□□□□ -1.31
SMAD4-202ENST00000398417 PPP1R15AO75807 674 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-202ENST00000398417 SENP3-EIF4A1A0A087X0R7 540 aa6.88□□□□□ -1.31
SMAD4-202ENST00000398417 HNRNPUQ00839 825 aaKnown RBP eCLIP6.88□□□□□ -1.31
SMAD4-202ENST00000398417 ARAP1Q96P48 1450 aa6.88□□□□□ -1.31
SMAD4-202ENST00000398417 SYNJ1O43426 1573 aa6.87□□□□□ -1.31
SMAD4-202ENST00000398417 FAM9BQ8IZU0 186 aa6.87□□□□□ -1.31
SMAD4-202ENST00000398417 NCAPD3P42695 1498 aa6.87□□□□□ -1.31
SMAD4-202ENST00000398417 PRXQ9BXM0 1461 aa6.86□□□□□ -1.31
SMAD4-202ENST00000398417 PHLDB1Q86UU1 1377 aa6.86□□□□□ -1.31
SMAD4-202ENST00000398417 HSPA5P11021 654 aaKnown RBP6.86□□□□□ -1.31
SMAD4-202ENST00000398417 FOXD1Q16676 465 aa6.85□□□□□ -1.31
SMAD4-202ENST00000398417 TSHZ2Q9NRE2 1034 aa6.85□□□□□ -1.31
SMAD4-202ENST00000398417 EIF4G1Q04637 1599 aaKnown RBP6.84□□□□□ -1.31
SMAD4-202ENST00000398417 RAD54L2Q9Y4B4 1467 aa6.83□□□□□ -1.32
SMAD4-202ENST00000398417 RRBP1Q9P2E9 1410 aaKnown RBP6.82□□□□□ -1.32
SMAD4-202ENST00000398417 ARHGAP35Q9NRY4 1499 aa6.82□□□□□ -1.32
SMAD4-202ENST00000398417 DNAJC5BQ9UF47 199 aa6.81□□□□□ -1.32
SMAD4-202ENST00000398417 EIF4G2P78344 907 aaKnown RBP eCLIP6.81□□□□□ -1.32
SMAD4-202ENST00000398417 TIMELESSQ9UNS1 1208 aa6.81□□□□□ -1.32
SMAD4-202ENST00000398417 MRS2Q9HD23 443 aa6.81□□□□□ -1.32
SMAD4-202ENST00000398417 SLC4A1APQ9BWU0 796 aaKnown RBP6.8□□□□□ -1.32
SMAD4-202ENST00000398417 BICRAQ9NZM4 1560 aa6.8□□□□□ -1.32
SMAD4-202ENST00000398417 CDK11AQ9UQ88 783 aaPredicted RBP6.8□□□□□ -1.32
SMAD4-202ENST00000398417 CUX1P39880 1505 aa6.8□□□□□ -1.32
SMAD4-202ENST00000398417 KDM2AQ9Y2K7 1162 aa6.79□□□□□ -1.32
SMAD4-202ENST00000398417 FHAD1B1AJZ9 1412 aa6.79□□□□□ -1.32
SMAD4-202ENST00000398417 CCER2I3L3R5 266 aa6.79□□□□□ -1.32
SMAD4-202ENST00000398417 FGD5Q6ZNL6 1462 aa6.79□□□□□ -1.32
SMAD4-202ENST00000398417 CFTRP13569 1480 aa6.79□□□□□ -1.32
SMAD4-202ENST00000398417 MPHOSPH9Q99550 1183 aa6.78□□□□□ -1.32
SMAD4-202ENST00000398417 SALL2Q9Y467 1007 aaPredicted RBP6.77□□□□□ -1.32
SMAD4-202ENST00000398417 FANCD2Q9BXW9 1451 aa6.77□□□□□ -1.33
SMAD4-202ENST00000398417 L3MBTL2Q969R5 705 aa6.77□□□□□ -1.33
SMAD4-202ENST00000398417 CHMP7Q8WUX9 453 aaPredicted RBP6.76□□□□□ -1.33
SMAD4-202ENST00000398417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.75□□□□□ -1.333e-6■■□□□ 11.7
SMAD4-202ENST00000398417 CFDP1Q9UEE9 299 aaPredicted RBP6.75□□□□□ -1.33
SMAD4-202ENST00000398417 LRRC9Q6ZRR7 1453 aa6.75□□□□□ -1.33
SMAD4-202ENST00000398417 ANP32EQ9BTT0 268 aa6.75□□□□□ -1.33
SMAD4-202ENST00000398417 SLC24A1O60721 1099 aa6.74□□□□□ -1.33
SMAD4-202ENST00000398417 ZNF644Q9H582 1327 aaPredicted RBP6.73□□□□□ -1.33
SMAD4-202ENST00000398417 RBM19Q9Y4C8 960 aaKnown RBP6.73□□□□□ -1.33
SMAD4-202ENST00000398417 RGL3Q3MIN7 710 aa6.72□□□□□ -1.33
SMAD4-202ENST00000398417 NESP48681 1621 aa6.72□□□□□ -1.33
SMAD4-202ENST00000398417 CCDC184Q52MB2 194 aa6.72□□□□□ -1.33
SMAD4-202ENST00000398417 PLEKHD1A6NEE1 506 aa6.72□□□□□ -1.33
SMAD4-202ENST00000398417 PKD2Q13563 968 aa6.72□□□□□ -1.33
SMAD4-202ENST00000398417 FMN1Q68DA7 1419 aa6.72□□□□□ -1.33
SMAD4-202ENST00000398417 ERICH3Q5RHP9 1530 aa6.71□□□□□ -1.33
SMAD4-202ENST00000398417 UNC13AQ9UPW8 1703 aa6.71□□□□□ -1.33
SMAD4-202ENST00000398417 FGD6Q6ZV73 1430 aa6.71□□□□□ -1.34
SMAD4-202ENST00000398417 TSPY4P0CV99 314 aa6.71□□□□□ -1.34
SMAD4-202ENST00000398417 TSPY10P0CW01 314 aa6.71□□□□□ -1.34
SMAD4-202ENST00000398417 B4GALNT3Q6L9W6 998 aa6.7□□□□□ -1.34
SMAD4-202ENST00000398417 NBPF8Q3BBV2 869 aa6.7□□□□□ -1.34
SMAD4-202ENST00000398417 CARD11Q9BXL7 1154 aa6.7□□□□□ -1.34
SMAD4-202ENST00000398417 TOP2BQ02880 1626 aa6.7□□□□□ -1.34
SMAD4-202ENST00000398417 HAP1P54257 671 aaPredicted RBP6.69□□□□□ -1.34
SMAD4-202ENST00000398417 NPM2Q86SE8 214 aaKnown RBP6.69□□□□□ -1.34
SMAD4-202ENST00000398417 CASKIN1Q8WXD9 1431 aa6.69□□□□□ -1.34
SMAD4-202ENST00000398417 PPP4R2Q9NY27 417 aa6.69□□□□□ -1.34
SMAD4-202ENST00000398417 AQRO60306 1485 aaKnown RBP eCLIP6.69□□□□□ -1.341e-6■■■■□ 21
SMAD4-202ENST00000398417 PDS5BQ9NTI5 1447 aa6.69□□□□□ -1.34
SMAD4-202ENST00000398417 TMC1Q8TDI8 760 aa6.69□□□□□ -1.34
SMAD4-202ENST00000398417 PTPRKQ15262 1439 aa6.68□□□□□ -1.34
SMAD4-202ENST00000398417 PEG3Q9GZU2 1588 aa6.67□□□□□ -1.34
SMAD4-202ENST00000398417 WASHC2AQ641Q2 1341 aa6.67□□□□□ -1.34
SMAD4-202ENST00000398417 HNRNPMP52272 730 aaKnown RBP eCLIP6.67□□□□□ -1.343e-7■□□□□ 10.2
SMAD4-202ENST00000398417 NCOA2Q15596 1464 aa6.67□□□□□ -1.34
SMAD4-202ENST00000398417 CCDC18Q5T9S5 1454 aa6.66□□□□□ -1.34
SMAD4-202ENST00000398417 PRKRIP1Q9H875 184 aaPredicted RBP6.66□□□□□ -1.34
SMAD4-202ENST00000398417 CCDC136Q96JN2 1154 aa6.66□□□□□ -1.34
SMAD4-202ENST00000398417 DCAF11Q8TEB1 546 aa6.66□□□□□ -1.34
SMAD4-202ENST00000398417 MYOM3Q5VTT5 1437 aa6.66□□□□□ -1.34
SMAD4-202ENST00000398417 C11orf95C9JLR9 678 aaPredicted RBP6.66□□□□□ -1.34
SMAD4-202ENST00000398417 HMGXB3Q12766 1538 aa6.65□□□□□ -1.34
SMAD4-202ENST00000398417 UACAQ9BZF9 1416 aa6.65□□□□□ -1.34
SMAD4-202ENST00000398417 POLA1P09884 1462 aaPredicted RBP6.65□□□□□ -1.34
SMAD4-202ENST00000398417 CC2D1BQ5T0F9 858 aaKnown RBP6.64□□□□□ -1.35
SMAD4-202ENST00000398417 KIF7Q2M1P5 1343 aa6.64□□□□□ -1.35
SMAD4-202ENST00000398417 CHGAP10645 457 aaKnown RBP6.63□□□□□ -1.35
SMAD4-202ENST00000398417 GAPVD1Q14C86 1478 aa6.63□□□□□ -1.35
SMAD4-202ENST00000398417 MAPKBP1O60336 1514 aa6.63□□□□□ -1.35
SMAD4-202ENST00000398417 CCDC7Q96M83 1385 aa6.63□□□□□ -1.35
SMAD4-202ENST00000398417 TOPBP1Q92547 1522 aa6.63□□□□□ -1.35
SMAD4-202ENST00000398417 JPH4Q96JJ6 628 aa6.62□□□□□ -1.35
SMAD4-202ENST00000398417 DAXXQ9UER7 740 aaPredicted RBP6.62□□□□□ -1.35
SMAD4-202ENST00000398417 NBR1Q14596 966 aa6.62□□□□□ -1.35
SMAD4-202ENST00000398417 NUP155O75694 1391 aa6.62□□□□□ -1.35
SMAD4-202ENST00000398417 TIAM1Q13009 1591 aa6.62□□□□□ -1.35
SMAD4-202ENST00000398417 SENP3Q9H4L4 574 aaPredicted RBP6.61□□□□□ -1.35
SMAD4-202ENST00000398417 NAIPQ13075 1403 aa6.61□□□□□ -1.35
SMAD4-202ENST00000398417 HFM1A2PYH4 1435 aa6.6□□□□□ -1.35
SMAD4-202ENST00000398417 ABCA10Q8WWZ4 1543 aa6.6□□□□□ -1.35
SMAD4-202ENST00000398417 WDR97A6NE52 1622 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms