RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 LRRC9Q6ZRR7 1453 aa29.91■■■□□ 2.38
CLK3-202ENST00000395066 RAD54L2Q9Y4B4 1467 aa29.89■■■□□ 2.38
CLK3-202ENST00000395066 MAPKBP1O60336 1514 aa29.88■■■□□ 2.37
CLK3-202ENST00000395066 CC2D2AQ9P2K1 1620 aa29.88■■■□□ 2.37
CLK3-202ENST00000395066 FANCD2Q9BXW9 1451 aa29.87■■■□□ 2.37
CLK3-202ENST00000395066 PCF11O94913 1555 aaKnown RBP29.84■■■□□ 2.37
CLK3-202ENST00000395066 FHOD3Q2V2M9 1422 aa29.83■■■□□ 2.37
CLK3-202ENST00000395066 MAP3K1Q13233 1512 aa29.82■■■□□ 2.36
CLK3-202ENST00000395066 SIN3AQ96ST3 1273 aa29.81■■■□□ 2.36
CLK3-202ENST00000395066 SETD5Q9C0A6 1442 aa29.81■■■□□ 2.36
CLK3-202ENST00000395066 NESP48681 1621 aa29.77■■■□□ 2.36
CLK3-202ENST00000395066 FHAD1B1AJZ9 1412 aa29.76■■■□□ 2.36
CLK3-202ENST00000395066 KCNH8Q96L42 1107 aa29.75■■■□□ 2.35
CLK3-202ENST00000395066 POLA1P09884 1462 aaPredicted RBP29.72■■■□□ 2.35
CLK3-202ENST00000395066 CFAP43Q8NDM7 1665 aa29.71■■■□□ 2.35
CLK3-202ENST00000395066 TOPBP1Q92547 1522 aa29.69■■■□□ 2.34
CLK3-202ENST00000395066 DNMBPQ6XZF7 1577 aa29.68■■■□□ 2.34
CLK3-202ENST00000395066 WDR97A6NE52 1622 aa29.66■■■□□ 2.34
CLK3-202ENST00000395066 ABCA10Q8WWZ4 1543 aa29.65■■■□□ 2.34
CLK3-202ENST00000395066 HIRIP3Q9BW71 556 aaPredicted RBP29.62■■■□□ 2.33
CLK3-202ENST00000395066 SUPT16HQ9Y5B9 1047 aaKnown RBP29.59■■■□□ 2.33
CLK3-202ENST00000395066 DDX10Q13206 875 aaKnown RBP29.58■■■□□ 2.33
CLK3-202ENST00000395066 FYCO1Q9BQS8 1478 aa29.57■■■□□ 2.32
CLK3-202ENST00000395066 CASKIN1Q8WXD9 1431 aa29.56■■■□□ 2.32
CLK3-202ENST00000395066 TDRD9Q8NDG6 1382 aaKnown RBP29.51■■■□□ 2.32
CLK3-202ENST00000395066 EFCAB5A4FU69 1503 aa29.51■■■□□ 2.31
CLK3-202ENST00000395066 CTTNBP2Q8WZ74 1663 aa29.5■■■□□ 2.31
CLK3-202ENST00000395066 CUL7Q14999 1698 aa29.48■■■□□ 2.31
CLK3-202ENST00000395066 URB2Q14146 1524 aaKnown RBP29.47■■■□□ 2.31
CLK3-202ENST00000395066 FGD6Q6ZV73 1430 aa29.44■■■□□ 2.3
CLK3-202ENST00000395066 MTUS2Q5JR59 1369 aa29.43■■■□□ 2.3
CLK3-202ENST00000395066 AQRO60306 1485 aaKnown RBP eCLIP29.43■■■□□ 2.31e-7■■■■■ 33.5
CLK3-202ENST00000395066 SNAPC4Q5SXM2 1469 aa29.43■■■□□ 2.3
CLK3-202ENST00000395066 DNAJC5BQ9UF47 199 aa29.41■■■□□ 2.3
CLK3-202ENST00000395066 FMN1Q68DA7 1419 aa29.41■■■□□ 2.3
CLK3-202ENST00000395066 PTPRKQ15262 1439 aa29.4■■■□□ 2.3
CLK3-202ENST00000395066 PPP1R15AO75807 674 aaPredicted RBP29.39■■■□□ 2.29
CLK3-202ENST00000395066 LRRIQ1Q96JM4 1722 aa29.36■■■□□ 2.29
CLK3-202ENST00000395066 CCDC18Q5T9S5 1454 aa29.34■■■□□ 2.29
CLK3-202ENST00000395066 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.33■■■□□ 2.29
CLK3-202ENST00000395066 GAPVD1Q14C86 1478 aa29.31■■■□□ 2.28
CLK3-202ENST00000395066 ABCA5Q8WWZ7 1642 aa29.28■■■□□ 2.28
CLK3-202ENST00000395066 NCOA2Q15596 1464 aa29.28■■■□□ 2.28
CLK3-202ENST00000395066 TIMELESSQ9UNS1 1208 aa29.27■■■□□ 2.28
CLK3-202ENST00000395066 TONSLQ96HA7 1378 aa29.27■■■□□ 2.28
CLK3-202ENST00000395066 SAMD9Q5K651 1589 aa29.27■■■□□ 2.28
CLK3-202ENST00000395066 BCANQ96GW7 911 aa29.26■■■□□ 2.27
CLK3-202ENST00000395066 TSHZ2Q9NRE2 1034 aa29.25■■■□□ 2.27
CLK3-202ENST00000395066 LAMC3Q9Y6N6 1575 aa29.25■■■□□ 2.27
CLK3-202ENST00000395066 HFM1A2PYH4 1435 aa29.23■■■□□ 2.27
CLK3-202ENST00000395066 GRIN2BQ13224 1484 aa29.23■■■□□ 2.27
CLK3-202ENST00000395066 PTPN23Q9H3S7 1636 aa29.23■■■□□ 2.27
CLK3-202ENST00000395066 MYOM3Q5VTT5 1437 aa29.21■■■□□ 2.27
CLK3-202ENST00000395066 CHIC2Q9UKJ5 165 aa29.2■■■□□ 2.27
CLK3-202ENST00000395066 ARID3CA6NKF2 412 aa29.2■■■□□ 2.26
CLK3-202ENST00000395066 NAIPQ13075 1403 aa29.2■■■□□ 2.26
CLK3-202ENST00000395066 UACAQ9BZF9 1416 aa29.19■■■□□ 2.26
CLK3-202ENST00000395066 TRIM52Q96A61 297 aa29.19■■■□□ 2.26
CLK3-202ENST00000395066 RRP7BPQ9NSQ0 103 aa29.19■■■□□ 2.26
CLK3-202ENST00000395066 MAGI3Q5TCQ9 1506 aa29.17■■■□□ 2.26
CLK3-202ENST00000395066 ANP32CO43423 234 aa29.14■■■□□ 2.26
CLK3-202ENST00000395066 KIF21AQ7Z4S6 1674 aa29.13■■■□□ 2.25
CLK3-202ENST00000395066 SUPT6HQ7KZ85 1726 aaKnown RBP29.13■■■□□ 2.25
CLK3-202ENST00000395066 FKBP8Q14318 412 aa29.12■■■□□ 2.25
CLK3-202ENST00000395066 PDS5BQ9NTI5 1447 aa29.12■■■□□ 2.25
CLK3-202ENST00000395066 EHBP1L1Q8N3D4 1523 aa29.09■■■□□ 2.25
CLK3-202ENST00000395066 UGGT2Q9NYU1 1516 aa29.06■■■□□ 2.24
CLK3-202ENST00000395066 TARBP1Q13395 1621 aaKnown RBP29.02■■■□□ 2.24
CLK3-202ENST00000395066 THOC2Q8NI27 1593 aaKnown RBP29.02■■■□□ 2.24
CLK3-202ENST00000395066 CCER2I3L3R5 266 aa29.02■■■□□ 2.24
CLK3-202ENST00000395066 KDM5BQ9UGL1 1544 aa29.01■■■□□ 2.23
CLK3-202ENST00000395066 CDK13Q14004 1512 aaKnown RBP28.99■■■□□ 2.23
CLK3-202ENST00000395066 ARHGEF11O15085 1522 aa28.98■■■□□ 2.23
CLK3-202ENST00000395066 KDM6BO15054 1643 aa28.98■■■□□ 2.23
CLK3-202ENST00000395066 ANP32EQ9BTT0 268 aa28.97■■■□□ 2.23
CLK3-202ENST00000395066 FOXD1Q16676 465 aa28.96■■■□□ 2.23
CLK3-202ENST00000395066 DENND4BO75064 1496 aaPredicted RBP28.96■■■□□ 2.23
CLK3-202ENST00000395066 EPRSP07814 1512 aaKnown RBP28.93■■■□□ 2.22
CLK3-202ENST00000395066 PBRM1Q86U86 1689 aa28.92■■■□□ 2.22
CLK3-202ENST00000395066 HECW1Q76N89 1606 aa28.9■■■□□ 2.22
CLK3-202ENST00000395066 IQGAP2Q13576 1575 aa28.9■■■□□ 2.22
CLK3-202ENST00000395066 HSPA5P11021 654 aaKnown RBP28.89■■■□□ 2.22
CLK3-202ENST00000395066 TCOF1Q13428 1488 aaKnown RBP28.88■■■□□ 2.21
CLK3-202ENST00000395066 WASHC2AQ641Q2 1341 aa28.86■■■□□ 2.21
CLK3-202ENST00000395066 NEFLP07196 543 aa28.85■■■□□ 2.21
CLK3-202ENST00000395066 MPHOSPH9Q99550 1183 aa28.85■■■□□ 2.21
CLK3-202ENST00000395066 GCC2Q8IWJ2 1684 aa28.85■■■□□ 2.21
CLK3-202ENST00000395066 ADAMTS12P58397 1594 aa28.83■■■□□ 2.21
CLK3-202ENST00000395066 WDR62O43379 1518 aa28.8■■■□□ 2.2
CLK3-202ENST00000395066 L3MBTL2Q969R5 705 aa28.8■■■□□ 2.2
CLK3-202ENST00000395066 ZNF644Q9H582 1327 aaPredicted RBP28.79■■■□□ 2.2
CLK3-202ENST00000395066 HNRNPUQ00839 825 aaKnown RBP eCLIP28.78■■■□□ 2.2
CLK3-202ENST00000395066 ZNF608Q9ULD9 1512 aaPredicted RBP28.76■■■□□ 2.2
CLK3-202ENST00000395066 EIF4G2P78344 907 aaKnown RBP eCLIP28.73■■■□□ 2.19
CLK3-202ENST00000395066 C11orf95C9JLR9 678 aaPredicted RBP28.73■■■□□ 2.19
CLK3-202ENST00000395066 MIA2Q96PC5 1412 aa28.73■■■□□ 2.19
CLK3-202ENST00000395066 CCDC184Q52MB2 194 aa28.72■■■□□ 2.19
CLK3-202ENST00000395066 IRX6P78412 446 aaPredicted RBP28.7■■■□□ 2.19
CLK3-202ENST00000395066 AKNAQ7Z591 1439 aa28.7■■■□□ 2.18
CLK3-202ENST00000395066 MRC2Q9UBG0 1479 aa28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms