RNA–Protein interactions for RNA: ENST00000394963.8

SMARCD1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD1, Length 3,658 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-202ENST00000394963 POLR3GLQ9BT43 218 aa23.02■■□□□ 1.28
SMARCD1-202ENST00000394963 CENPBP07199 599 aaPredicted RBP23.02■■□□□ 1.28
SMARCD1-202ENST00000394963 SIN3AQ96ST3 1273 aa23.01■■□□□ 1.27
SMARCD1-202ENST00000394963 MYT1LQ9UL68 1186 aa22.98■■□□□ 1.27
SMARCD1-202ENST00000394963 AQRO60306 1485 aaKnown RBP eCLIP22.98■■□□□ 1.271e-6■■■■■ 28
SMARCD1-202ENST00000394963 PRXQ9BXM0 1461 aa22.98■■□□□ 1.27
SMARCD1-202ENST00000394963 CCNB3Q8WWL7 1395 aa22.95■■□□□ 1.26
SMARCD1-202ENST00000394963 POLA1P09884 1462 aaPredicted RBP22.93■■□□□ 1.26
SMARCD1-202ENST00000394963 ZNF326Q5BKZ1 582 aaKnown RBP22.93■■□□□ 1.26
SMARCD1-202ENST00000394963 TOPBP1Q92547 1522 aa22.9■■□□□ 1.26
SMARCD1-202ENST00000394963 MIER1Q8N108 512 aa22.89■■□□□ 1.25
SMARCD1-202ENST00000394963 ARHGAP35Q9NRY4 1499 aa22.88■■□□□ 1.25
SMARCD1-202ENST00000394963 GAPVD1Q14C86 1478 aa22.83■■□□□ 1.25
SMARCD1-202ENST00000394963 KCNH8Q96L42 1107 aa22.8■■□□□ 1.24
SMARCD1-202ENST00000394963 FHAD1B1AJZ9 1412 aa22.78■■□□□ 1.24
SMARCD1-202ENST00000394963 DDX10Q13206 875 aaKnown RBP22.78■■□□□ 1.24
SMARCD1-202ENST00000394963 FOXD1Q16676 465 aa22.76■■□□□ 1.23
SMARCD1-202ENST00000394963 CDK11AQ9UQ88 783 aaPredicted RBP22.76■■□□□ 1.23
SMARCD1-202ENST00000394963 URB2Q14146 1524 aaKnown RBP22.74■■□□□ 1.23
SMARCD1-202ENST00000394963 RAB3GAP2Q9H2M9 1393 aa22.73■■□□□ 1.23
SMARCD1-202ENST00000394963 GTF3C3Q9Y5Q9 886 aa22.73■■□□□ 1.23
SMARCD1-202ENST00000394963 PHLDB1Q86UU1 1377 aa22.72■■□□□ 1.23
SMARCD1-202ENST00000394963 BIVM-ERCC5R4GMW8 1640 aa22.71■■□□□ 1.23
SMARCD1-202ENST00000394963 ERICH3Q5RHP9 1530 aa22.69■■□□□ 1.22
SMARCD1-202ENST00000394963 CFDP1Q9UEE9 299 aaPredicted RBP22.64■■□□□ 1.21
SMARCD1-202ENST00000394963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.63■■□□□ 1.213e-7■■□□□ 13.3
SMARCD1-202ENST00000394963 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
SMARCD1-202ENST00000394963 TONSLQ96HA7 1378 aa22.63■■□□□ 1.21
SMARCD1-202ENST00000394963 JPH4Q96JJ6 628 aa22.62■■□□□ 1.21
SMARCD1-202ENST00000394963 DHX57Q6P158 1386 aaKnown RBP22.62■■□□□ 1.21
SMARCD1-202ENST00000394963 PLEKHD1A6NEE1 506 aa22.6■■□□□ 1.21
SMARCD1-202ENST00000394963 FMN1Q68DA7 1419 aa22.6■■□□□ 1.21
SMARCD1-202ENST00000394963 ACIN1Q9UKV3 1341 aaKnown RBP22.59■■□□□ 1.21
SMARCD1-202ENST00000394963 SCAF1Q9H7N4 1312 aaKnown RBP22.59■■□□□ 1.21
SMARCD1-202ENST00000394963 ZNF644Q9H582 1327 aaPredicted RBP22.58■■□□□ 1.21
SMARCD1-202ENST00000394963 ZNF608Q9ULD9 1512 aaPredicted RBP22.58■■□□□ 1.21
SMARCD1-202ENST00000394963 ABCA10Q8WWZ4 1543 aa22.55■■□□□ 1.2
SMARCD1-202ENST00000394963 SLC4A1APQ9BWU0 796 aaKnown RBP22.55■■□□□ 1.2
SMARCD1-202ENST00000394963 SETD5Q9C0A6 1442 aa22.55■■□□□ 1.2
SMARCD1-202ENST00000394963 KDM2AQ9Y2K7 1162 aa22.52■■□□□ 1.2
SMARCD1-202ENST00000394963 LRRC9Q6ZRR7 1453 aa22.52■■□□□ 1.2
SMARCD1-202ENST00000394963 LAMC3Q9Y6N6 1575 aa22.5■■□□□ 1.19
SMARCD1-202ENST00000394963 SENP3-EIF4A1A0A087X0R7 540 aa22.5■■□□□ 1.19
SMARCD1-202ENST00000394963 SENP3Q9H4L4 574 aaPredicted RBP22.49■■□□□ 1.19
SMARCD1-202ENST00000394963 MRC2Q9UBG0 1479 aa22.48■■□□□ 1.19
SMARCD1-202ENST00000394963 TSPY4P0CV99 314 aa22.46■■□□□ 1.19
SMARCD1-202ENST00000394963 TSPY10P0CW01 314 aa22.46■■□□□ 1.19
SMARCD1-202ENST00000394963 BCANQ96GW7 911 aa22.44■■□□□ 1.18
SMARCD1-202ENST00000394963 RGL3Q3MIN7 710 aa22.4■■□□□ 1.18
SMARCD1-202ENST00000394963 KIF21AQ7Z4S6 1674 aa22.4■■□□□ 1.18
SMARCD1-202ENST00000394963 ANP32CO43423 234 aa22.39■■□□□ 1.17
SMARCD1-202ENST00000394963 GRIN2BQ13224 1484 aa22.38■■□□□ 1.17
SMARCD1-202ENST00000394963 HNRNPMP52272 730 aaKnown RBP eCLIP22.38■■□□□ 1.17
SMARCD1-202ENST00000394963 SNAPC4Q5SXM2 1469 aa22.38■■□□□ 1.17
SMARCD1-202ENST00000394963 PCF11O94913 1555 aaKnown RBP22.36■■□□□ 1.17
SMARCD1-202ENST00000394963 CASKIN1Q8WXD9 1431 aa22.35■■□□□ 1.17
SMARCD1-202ENST00000394963 RRBP1Q9P2E9 1410 aaKnown RBP22.34■■□□□ 1.17
SMARCD1-202ENST00000394963 TIAM1Q13009 1591 aa22.34■■□□□ 1.17
SMARCD1-202ENST00000394963 FGD6Q6ZV73 1430 aa22.32■■□□□ 1.16
SMARCD1-202ENST00000394963 MPHOSPH9Q99550 1183 aa22.3■■□□□ 1.16
SMARCD1-202ENST00000394963 CDK13Q14004 1512 aaKnown RBP22.3■■□□□ 1.16
SMARCD1-202ENST00000394963 PRDM2Q13029 1718 aa22.29■■□□□ 1.16
SMARCD1-202ENST00000394963 NCOA2Q15596 1464 aa22.29■■□□□ 1.16
SMARCD1-202ENST00000394963 CLSPNQ9HAW4 1339 aa22.29■■□□□ 1.16
SMARCD1-202ENST00000394963 CARMIL2Q6F5E8 1435 aa22.27■■□□□ 1.16
SMARCD1-202ENST00000394963 PPP1R15AO75807 674 aaPredicted RBP22.24■■□□□ 1.15
SMARCD1-202ENST00000394963 IFT140Q96RY7 1462 aa22.23■■□□□ 1.15
SMARCD1-202ENST00000394963 FYCO1Q9BQS8 1478 aa22.23■■□□□ 1.15
SMARCD1-202ENST00000394963 PRG4Q92954 1404 aaPredicted RBP22.22■■□□□ 1.15
SMARCD1-202ENST00000394963 PKD2Q13563 968 aa22.21■■□□□ 1.15
SMARCD1-202ENST00000394963 CHGAP10645 457 aaKnown RBP22.2■■□□□ 1.15
SMARCD1-202ENST00000394963 L3MBTL2Q969R5 705 aa22.2■■□□□ 1.14
SMARCD1-202ENST00000394963 MYOM3Q5VTT5 1437 aa22.2■■□□□ 1.14
SMARCD1-202ENST00000394963 FAM9BQ8IZU0 186 aa22.19■■□□□ 1.14
SMARCD1-202ENST00000394963 NPM1P06748 294 aaKnown RBP eCLIP22.18■■□□□ 1.14
SMARCD1-202ENST00000394963 PTPRGP23470 1445 aa22.17■■□□□ 1.14
SMARCD1-202ENST00000394963 CCDC18Q5T9S5 1454 aa22.17■■□□□ 1.14
SMARCD1-202ENST00000394963 NEFLP07196 543 aa22.17■■□□□ 1.14
SMARCD1-202ENST00000394963 PLB1Q6P1J6 1458 aa22.17■■□□□ 1.14
SMARCD1-202ENST00000394963 EIF4G2P78344 907 aaKnown RBP eCLIP22.16■■□□□ 1.14
SMARCD1-202ENST00000394963 EFCAB5A4FU69 1503 aa22.12■■□□□ 1.13
SMARCD1-202ENST00000394963 HSPA5P11021 654 aaKnown RBP22.12■■□□□ 1.13
SMARCD1-202ENST00000394963 CUL7Q14999 1698 aa22.12■■□□□ 1.13
SMARCD1-202ENST00000394963 SALL2Q9Y467 1007 aaPredicted RBP22.11■■□□□ 1.13
SMARCD1-202ENST00000394963 HNRNPUQ00839 825 aaKnown RBP eCLIP22.11■■□□□ 1.13
SMARCD1-202ENST00000394963 PTPRKQ15262 1439 aa22.1■■□□□ 1.13
SMARCD1-202ENST00000394963 IQGAP2Q13576 1575 aa22.1■■□□□ 1.13
SMARCD1-202ENST00000394963 PLPPR3Q6T4P5 718 aa22.1■■□□□ 1.13
SMARCD1-202ENST00000394963 DCAF11Q8TEB1 546 aa22.09■■□□□ 1.13
SMARCD1-202ENST00000394963 NUP155O75694 1391 aa22.08■■□□□ 1.13
SMARCD1-202ENST00000394963 EPRSP07814 1512 aaKnown RBP22.08■■□□□ 1.13
SMARCD1-202ENST00000394963 GRIN2AQ12879 1464 aa22.07■■□□□ 1.12
SMARCD1-202ENST00000394963 IRX6P78412 446 aaPredicted RBP22.06■■□□□ 1.12
SMARCD1-202ENST00000394963 KIAA0586Q9BVV6 1533 aa22.04■■□□□ 1.12
SMARCD1-202ENST00000394963 CARD11Q9BXL7 1154 aa22■■□□□ 1.11
SMARCD1-202ENST00000394963 PELP1Q8IZL8 1130 aaKnown RBP21.99■■□□□ 1.11
SMARCD1-202ENST00000394963 FKBP8Q14318 412 aa21.99■■□□□ 1.11
SMARCD1-202ENST00000394963 CYB5RLQ6IPT4 315 aa21.97■■□□□ 1.11
SMARCD1-202ENST00000394963 MRS2Q9HD23 443 aa21.97■■□□□ 1.11
SMARCD1-202ENST00000394963 THOC2Q8NI27 1593 aaKnown RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms