RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 HIRIP3Q9BW71 556 aaPredicted RBP12.77□□□□□ -0.37
RTN4-206ENST00000394611 ABCA10Q8WWZ4 1543 aa12.76□□□□□ -0.37
RTN4-206ENST00000394611 IRX6P78412 446 aaPredicted RBP12.75□□□□□ -0.37
RTN4-206ENST00000394611 BCL11AQ9H165 835 aa12.75□□□□□ -0.37
RTN4-206ENST00000394611 WDR97A6NE52 1622 aa12.75□□□□□ -0.37
RTN4-206ENST00000394611 TRIM52Q96A61 297 aa12.73□□□□□ -0.37
RTN4-206ENST00000394611 KIF27Q86VH2 1401 aa12.71□□□□□ -0.37
RTN4-206ENST00000394611 EIF4G3O43432 1585 aaKnown RBP12.71□□□□□ -0.37
RTN4-206ENST00000394611 GAPVD1Q14C86 1478 aa12.7□□□□□ -0.38
RTN4-206ENST00000394611 SENP3-EIF4A1A0A087X0R7 540 aa12.69□□□□□ -0.38
RTN4-206ENST00000394611 ABCA5Q8WWZ7 1642 aa12.69□□□□□ -0.38
RTN4-206ENST00000394611 POLR3GLQ9BT43 218 aa12.67□□□□□ -0.38
RTN4-206ENST00000394611 CSRNP3Q8WYN3 585 aa12.67□□□□□ -0.38
RTN4-206ENST00000394611 SUPT16HQ9Y5B9 1047 aaKnown RBP12.66□□□□□ -0.38
RTN4-206ENST00000394611 IGF1RP08069 1367 aa12.65□□□□□ -0.38
RTN4-206ENST00000394611 PBRM1Q86U86 1689 aa12.65□□□□□ -0.38
RTN4-206ENST00000394611 GRIN2BQ13224 1484 aa12.64□□□□□ -0.39
RTN4-206ENST00000394611 ANP32EQ9BTT0 268 aa12.63□□□□□ -0.39
RTN4-206ENST00000394611 DDX10Q13206 875 aaKnown RBP12.62□□□□□ -0.39
RTN4-206ENST00000394611 SNAPC4Q5SXM2 1469 aa12.62□□□□□ -0.39
RTN4-206ENST00000394611 NBR1Q14596 966 aa12.62□□□□□ -0.39
RTN4-206ENST00000394611 FBLN2P98095 1184 aa12.61□□□□□ -0.39
RTN4-206ENST00000394611 EEA1Q15075 1411 aa12.61□□□□□ -0.39
RTN4-206ENST00000394611 ERICH3Q5RHP9 1530 aa12.6□□□□□ -0.39
RTN4-206ENST00000394611 KCNH8Q96L42 1107 aa12.59□□□□□ -0.39
RTN4-206ENST00000394611 CARMIL1Q5VZK9 1371 aa12.58□□□□□ -0.39
RTN4-206ENST00000394611 CHMP7Q8WUX9 453 aaPredicted RBP12.56□□□□□ -0.4
RTN4-206ENST00000394611 TSHZ2Q9NRE2 1034 aa12.55□□□□□ -0.4
RTN4-206ENST00000394611 ADAMTS12P58397 1594 aa12.55□□□□□ -0.4
RTN4-206ENST00000394611 MAGI1Q96QZ7 1491 aaPredicted RBP12.55□□□□□ -0.4
RTN4-206ENST00000394611 FHAD1B1AJZ9 1412 aa12.54□□□□□ -0.4
RTN4-206ENST00000394611 PRXQ9BXM0 1461 aa12.54□□□□□ -0.4
RTN4-206ENST00000394611 CUL7Q14999 1698 aa12.54□□□□□ -0.4
RTN4-206ENST00000394611 RAPGEF2Q9Y4G8 1499 aa12.54□□□□□ -0.4
RTN4-206ENST00000394611 SYNJ2O15056 1496 aa12.52□□□□□ -0.41
RTN4-206ENST00000394611 FAM50AQ14320 339 aaKnown RBP12.51□□□□□ -0.41
RTN4-206ENST00000394611 RTN4Q9NQC3 1192 aaKnown RBP12.51□□□□□ -0.41
RTN4-206ENST00000394611 CHD1O14646 1710 aa12.51□□□□□ -0.41
RTN4-206ENST00000394611 GRIN2AQ12879 1464 aa12.49□□□□□ -0.41
RTN4-206ENST00000394611 KIF21BO75037 1637 aa12.49□□□□□ -0.41
RTN4-206ENST00000394611 NPM2Q86SE8 214 aaKnown RBP12.46□□□□□ -0.41
RTN4-206ENST00000394611 GOLGA3Q08378 1498 aa12.46□□□□□ -0.41
RTN4-206ENST00000394611 CDK11AQ9UQ88 783 aaPredicted RBP12.45□□□□□ -0.42
RTN4-206ENST00000394611 CEP170Q5SW79 1584 aa12.44□□□□□ -0.42
RTN4-206ENST00000394611 HNRNPUQ00839 825 aaKnown RBP eCLIP12.43□□□□□ -0.423e-6■□□□□ 10
RTN4-206ENST00000394611 OSCARQ8IYS5 282 aa12.41□□□□□ -0.42
RTN4-206ENST00000394611 ANP32CO43423 234 aa12.41□□□□□ -0.42
RTN4-206ENST00000394611 RTL5Q5HYW3 569 aaPredicted RBP12.41□□□□□ -0.42
RTN4-206ENST00000394611 P3H3Q8IVL6 736 aa12.41□□□□□ -0.42
RTN4-206ENST00000394611 RBM19Q9Y4C8 960 aaKnown RBP12.4□□□□□ -0.42
RTN4-206ENST00000394611 EIF5BO60841 1220 aaKnown RBP12.4□□□□□ -0.42
RTN4-206ENST00000394611 NUP160Q12769 1436 aa12.4□□□□□ -0.42
RTN4-206ENST00000394611 CTTNBP2Q8WZ74 1663 aa12.37□□□□□ -0.43
RTN4-206ENST00000394611 TNIKQ9UKE5 1360 aa12.36□□□□□ -0.43
RTN4-206ENST00000394611 FAM9BQ8IZU0 186 aa12.36□□□□□ -0.43
RTN4-206ENST00000394611 CEP162Q5TB80 1403 aa12.36□□□□□ -0.43
RTN4-206ENST00000394611 KIAA0586Q9BVV6 1533 aa12.36□□□□□ -0.43
RTN4-206ENST00000394611 SALL2Q9Y467 1007 aaPredicted RBP12.35□□□□□ -0.43
RTN4-206ENST00000394611 IQGAP2Q13576 1575 aa12.34□□□□□ -0.43
RTN4-206ENST00000394611 JPH4Q96JJ6 628 aa12.34□□□□□ -0.43
RTN4-206ENST00000394611 CLASP1Q7Z460 1538 aa12.33□□□□□ -0.44
RTN4-206ENST00000394611 SIN3AQ96ST3 1273 aa12.33□□□□□ -0.44
RTN4-206ENST00000394611 CCDC136Q96JN2 1154 aa12.32□□□□□ -0.44
RTN4-206ENST00000394611 ZNF326Q5BKZ1 582 aaKnown RBP12.31□□□□□ -0.44
RTN4-206ENST00000394611 ARID3CA6NKF2 412 aa12.3□□□□□ -0.44
RTN4-206ENST00000394611 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.3□□□□□ -0.44
RTN4-206ENST00000394611 PRG4Q92954 1404 aaPredicted RBP12.28□□□□□ -0.44
RTN4-206ENST00000394611 ERCC6L2Q5T890 1561 aa12.28□□□□□ -0.44
RTN4-206ENST00000394611 B4GALNT3Q6L9W6 998 aa12.28□□□□□ -0.44
RTN4-206ENST00000394611 CLIP1P30622 1438 aa12.28□□□□□ -0.44
RTN4-206ENST00000394611 ARXQ96QS3 562 aa12.27□□□□□ -0.44
RTN4-206ENST00000394611 UGGT2Q9NYU1 1516 aa12.26□□□□□ -0.45
RTN4-206ENST00000394611 SHROOM2Q13796 1616 aa12.26□□□□□ -0.45
RTN4-206ENST00000394611 DISP1Q96F81 1524 aa12.26□□□□□ -0.45
RTN4-206ENST00000394611 ARHGAP35Q9NRY4 1499 aa12.25□□□□□ -0.45
RTN4-206ENST00000394611 FHOD3Q2V2M9 1422 aa12.24□□□□□ -0.45
RTN4-206ENST00000394611 DEKP35659 375 aaKnown RBP12.23□□□□□ -0.45
RTN4-206ENST00000394611 KIAA0556O60303 1618 aa12.23□□□□□ -0.45
RTN4-206ENST00000394611 SAMD9Q5K651 1589 aa12.22□□□□□ -0.45
RTN4-206ENST00000394611 CARMIL2Q6F5E8 1435 aa12.22□□□□□ -0.45
RTN4-206ENST00000394611 ARAP1Q96P48 1450 aa12.21□□□□□ -0.45
RTN4-206ENST00000394611 DAXXQ9UER7 740 aaPredicted RBP12.21□□□□□ -0.46
RTN4-206ENST00000394611 LAS1LQ9Y4W2 734 aaKnown RBP12.2□□□□□ -0.46
RTN4-206ENST00000394611 EFCAB5A4FU69 1503 aa12.19□□□□□ -0.46
RTN4-206ENST00000394611 ARHGEF11O15085 1522 aa12.19□□□□□ -0.46
RTN4-206ENST00000394611 PRKCSHP14314 528 aaPredicted RBP12.18□□□□□ -0.46
RTN4-206ENST00000394611 RIMBP3CA6NJZ7 1639 aa12.17□□□□□ -0.46
RTN4-206ENST00000394611 RIMBP3BA6NNM3 1639 aa12.17□□□□□ -0.46
RTN4-206ENST00000394611 RIMBP3Q9UFD9 1639 aa12.17□□□□□ -0.46
RTN4-206ENST00000394611 PTPRGP23470 1445 aa12.16□□□□□ -0.46
RTN4-206ENST00000394611 ANP32AP39687 249 aaKnown RBP12.16□□□□□ -0.46
RTN4-206ENST00000394611 KANK4Q5T7N3 995 aaPredicted RBP12.15□□□□□ -0.46
RTN4-206ENST00000394611 DNAJC5Q9H3Z4 198 aa12.15□□□□□ -0.46
RTN4-206ENST00000394611 CYB5RLQ6IPT4 315 aa12.15□□□□□ -0.46
RTN4-206ENST00000394611 CLSPNQ9HAW4 1339 aa12.13□□□□□ -0.47
RTN4-206ENST00000394611 PLB1Q6P1J6 1458 aa12.13□□□□□ -0.47
RTN4-206ENST00000394611 ANO8Q9HCE9 1232 aaPredicted RBP12.13□□□□□ -0.47
RTN4-206ENST00000394611 CHIC2Q9UKJ5 165 aa12.13□□□□□ -0.47
RTN4-206ENST00000394611 MRS2Q9HD23 443 aa12.11□□□□□ -0.47
RTN4-206ENST00000394611 FMN1Q68DA7 1419 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms