RNA–Protein interactions for RNA: ENST00000394419.8

ACTN1-203, Transcript of actinin alpha 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ACTN1, Length 3,464 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-203ENST00000394419 CHIC2Q9UKJ5 165 aa14.98□□□□□ -0.01
ACTN1-203ENST00000394419 CNGB1Q14028 1251 aaPredicted RBP14.98□□□□□ -0.01
ACTN1-203ENST00000394419 NEFLP07196 543 aa14.95□□□□□ -0.02
ACTN1-203ENST00000394419 FHOD3Q2V2M9 1422 aa14.95□□□□□ -0.02
ACTN1-203ENST00000394419 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
ACTN1-203ENST00000394419 SETD5Q9C0A6 1442 aa14.94□□□□□ -0.02
ACTN1-203ENST00000394419 MTUS2Q5JR59 1369 aa14.94□□□□□ -0.02
ACTN1-203ENST00000394419 ANP32CO43423 234 aa14.93□□□□□ -0.02
ACTN1-203ENST00000394419 SUPT16HQ9Y5B9 1047 aaKnown RBP14.93□□□□□ -0.02
ACTN1-203ENST00000394419 PHLDB1Q86UU1 1377 aa14.92□□□□□ -0.02
ACTN1-203ENST00000394419 RRBP1Q9P2E9 1410 aaKnown RBP14.92□□□□□ -0.02
ACTN1-203ENST00000394419 BIVM-ERCC5R4GMW8 1640 aa14.91□□□□□ -0.02
ACTN1-203ENST00000394419 FKBP8Q14318 412 aa14.91□□□□□ -0.02
ACTN1-203ENST00000394419 RRP7BPQ9NSQ0 103 aa14.91□□□□□ -0.02
ACTN1-203ENST00000394419 RAD54L2Q9Y4B4 1467 aa14.91□□□□□ -0.02
ACTN1-203ENST00000394419 TONSLQ96HA7 1378 aa14.91□□□□□ -0.02
ACTN1-203ENST00000394419 HMGXB3Q12766 1538 aa14.9□□□□□ -0.02
ACTN1-203ENST00000394419 TDRD9Q8NDG6 1382 aaKnown RBP14.89□□□□□ -0.03
ACTN1-203ENST00000394419 FHAD1B1AJZ9 1412 aa14.88□□□□□ -0.03
ACTN1-203ENST00000394419 POLR3GLQ9BT43 218 aa14.87□□□□□ -0.03
ACTN1-203ENST00000394419 FANCD2Q9BXW9 1451 aa14.86□□□□□ -0.03
ACTN1-203ENST00000394419 LRRC9Q6ZRR7 1453 aa14.83□□□□□ -0.04
ACTN1-203ENST00000394419 NESP48681 1621 aa14.81□□□□□ -0.04
ACTN1-203ENST00000394419 PPP1R15AO75807 674 aaPredicted RBP14.8□□□□□ -0.04
ACTN1-203ENST00000394419 FBLN2P98095 1184 aa14.77□□□□□ -0.04
ACTN1-203ENST00000394419 DNAJC5BQ9UF47 199 aa14.77□□□□□ -0.05
ACTN1-203ENST00000394419 TIAM1Q13009 1591 aa14.77□□□□□ -0.05
ACTN1-203ENST00000394419 ZNF326Q5BKZ1 582 aaKnown RBP14.76□□□□□ -0.05
ACTN1-203ENST00000394419 IRX6P78412 446 aaPredicted RBP14.76□□□□□ -0.05
ACTN1-203ENST00000394419 HNRNPUQ00839 825 aaKnown RBP eCLIP14.76□□□□□ -0.053e-7■■□□□ 13
ACTN1-203ENST00000394419 FOXD1Q16676 465 aa14.76□□□□□ -0.05
ACTN1-203ENST00000394419 ZNF777Q9ULD5 760 aaPredicted RBP14.73□□□□□ -0.05
ACTN1-203ENST00000394419 WDR97A6NE52 1622 aa14.72□□□□□ -0.05
ACTN1-203ENST00000394419 CC2D2AQ9P2K1 1620 aa14.71□□□□□ -0.05
ACTN1-203ENST00000394419 POLA1P09884 1462 aaPredicted RBP14.7□□□□□ -0.06
ACTN1-203ENST00000394419 FMN1Q68DA7 1419 aa14.7□□□□□ -0.06
ACTN1-203ENST00000394419 FAM9BQ8IZU0 186 aa14.68□□□□□ -0.06
ACTN1-203ENST00000394419 PCF11O94913 1555 aaKnown RBP14.68□□□□□ -0.06
ACTN1-203ENST00000394419 TIMELESSQ9UNS1 1208 aa14.68□□□□□ -0.06
ACTN1-203ENST00000394419 MAPKBP1O60336 1514 aa14.68□□□□□ -0.06
ACTN1-203ENST00000394419 SENP3-EIF4A1A0A087X0R7 540 aa14.67□□□□□ -0.06
ACTN1-203ENST00000394419 TSHZ2Q9NRE2 1034 aa14.67□□□□□ -0.06
ACTN1-203ENST00000394419 TOPBP1Q92547 1522 aa14.67□□□□□ -0.06
ACTN1-203ENST00000394419 FGD6Q6ZV73 1430 aa14.66□□□□□ -0.06
ACTN1-203ENST00000394419 CASKIN1Q8WXD9 1431 aa14.64□□□□□ -0.07
ACTN1-203ENST00000394419 CCDC18Q5T9S5 1454 aa14.64□□□□□ -0.07
ACTN1-203ENST00000394419 HSPA5P11021 654 aaKnown RBP14.63□□□□□ -0.07
ACTN1-203ENST00000394419 EIF4G2P78344 907 aaKnown RBP eCLIP14.63□□□□□ -0.076e-7■■■■■ 48.9
ACTN1-203ENST00000394419 SLC4A1APQ9BWU0 796 aaKnown RBP14.62□□□□□ -0.07
ACTN1-203ENST00000394419 GAPVD1Q14C86 1478 aa14.6□□□□□ -0.07
ACTN1-203ENST00000394419 FYCO1Q9BQS8 1478 aa14.6□□□□□ -0.07
ACTN1-203ENST00000394419 CCER2I3L3R5 266 aa14.59□□□□□ -0.07
ACTN1-203ENST00000394419 MPHOSPH9Q99550 1183 aa14.59□□□□□ -0.07
ACTN1-203ENST00000394419 ABCA10Q8WWZ4 1543 aa14.58□□□□□ -0.08
ACTN1-203ENST00000394419 L3MBTL2Q969R5 705 aa14.58□□□□□ -0.08
ACTN1-203ENST00000394419 MRS2Q9HD23 443 aa14.58□□□□□ -0.08
ACTN1-203ENST00000394419 PDS5BQ9NTI5 1447 aa14.58□□□□□ -0.08
ACTN1-203ENST00000394419 DNMBPQ6XZF7 1577 aa14.57□□□□□ -0.08
ACTN1-203ENST00000394419 MAP3K1Q13233 1512 aa14.57□□□□□ -0.08
ACTN1-203ENST00000394419 NCOA2Q15596 1464 aa14.57□□□□□ -0.08
ACTN1-203ENST00000394419 CDK11AQ9UQ88 783 aaPredicted RBP14.56□□□□□ -0.08
ACTN1-203ENST00000394419 ERICH6Q7L0X2 663 aa14.56□□□□□ -0.08
ACTN1-203ENST00000394419 PTPRKQ15262 1439 aa14.56□□□□□ -0.08
ACTN1-203ENST00000394419 ZNF644Q9H582 1327 aaPredicted RBP14.55□□□□□ -0.08
ACTN1-203ENST00000394419 MYOM3Q5VTT5 1437 aa14.54□□□□□ -0.08
ACTN1-203ENST00000394419 AQRO60306 1485 aaKnown RBP eCLIP14.54□□□□□ -0.084e-7■■■■■ 30.8
ACTN1-203ENST00000394419 UACAQ9BZF9 1416 aa14.53□□□□□ -0.08
ACTN1-203ENST00000394419 CHMP7Q8WUX9 453 aaPredicted RBP14.53□□□□□ -0.08
ACTN1-203ENST00000394419 BCL11AQ9H165 835 aa14.53□□□□□ -0.08
ACTN1-203ENST00000394419 KDM2AQ9Y2K7 1162 aa14.52□□□□□ -0.09
ACTN1-203ENST00000394419 CFDP1Q9UEE9 299 aaPredicted RBP14.51□□□□□ -0.09
ACTN1-203ENST00000394419 URB2Q14146 1524 aaKnown RBP14.51□□□□□ -0.09
ACTN1-203ENST00000394419 EFCAB5A4FU69 1503 aa14.51□□□□□ -0.09
ACTN1-203ENST00000394419 NAIPQ13075 1403 aa14.5□□□□□ -0.09
ACTN1-203ENST00000394419 HFM1A2PYH4 1435 aa14.49□□□□□ -0.09
ACTN1-203ENST00000394419 WASHC2AQ641Q2 1341 aa14.49□□□□□ -0.09
ACTN1-203ENST00000394419 RBM19Q9Y4C8 960 aaKnown RBP14.47□□□□□ -0.09
ACTN1-203ENST00000394419 CCDC184Q52MB2 194 aa14.47□□□□□ -0.09
ACTN1-203ENST00000394419 SALL2Q9Y467 1007 aaPredicted RBP14.46□□□□□ -0.1
ACTN1-203ENST00000394419 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.45□□□□□ -0.1
ACTN1-203ENST00000394419 ANP32EQ9BTT0 268 aa14.43□□□□□ -0.1
ACTN1-203ENST00000394419 PRDM2Q13029 1718 aa14.43□□□□□ -0.1
ACTN1-203ENST00000394419 CFAP43Q8NDM7 1665 aa14.43□□□□□ -0.1
ACTN1-203ENST00000394419 C11orf95C9JLR9 678 aaPredicted RBP14.42□□□□□ -0.1
ACTN1-203ENST00000394419 CDK13Q14004 1512 aaKnown RBP14.42□□□□□ -0.1
ACTN1-203ENST00000394419 B4GALNT3Q6L9W6 998 aa14.42□□□□□ -0.1
ACTN1-203ENST00000394419 NBPF8Q3BBV2 869 aa14.41□□□□□ -0.1
ACTN1-203ENST00000394419 SNAPC4Q5SXM2 1469 aa14.41□□□□□ -0.1
ACTN1-203ENST00000394419 CUL7Q14999 1698 aa14.41□□□□□ -0.1
ACTN1-203ENST00000394419 PKD2Q13563 968 aa14.41□□□□□ -0.1
ACTN1-203ENST00000394419 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.4□□□□□ -0.15e-7■□□□□ 10.3
ACTN1-203ENST00000394419 PTPN23Q9H3S7 1636 aa14.39□□□□□ -0.11
ACTN1-203ENST00000394419 TSPY4P0CV99 314 aa14.39□□□□□ -0.11
ACTN1-203ENST00000394419 TSPY10P0CW01 314 aa14.39□□□□□ -0.11
ACTN1-203ENST00000394419 PRKRIP1Q9H875 184 aaPredicted RBP14.39□□□□□ -0.11
ACTN1-203ENST00000394419 PLEKHD1A6NEE1 506 aa14.38□□□□□ -0.11
ACTN1-203ENST00000394419 RGL3Q3MIN7 710 aa14.38□□□□□ -0.11
ACTN1-203ENST00000394419 TMC1Q8TDI8 760 aa14.37□□□□□ -0.11
ACTN1-203ENST00000394419 SUPT6HQ7KZ85 1726 aaKnown RBP14.37□□□□□ -0.11
ACTN1-203ENST00000394419 GRIN2BQ13224 1484 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms