RNA–Protein interactions for RNA: ENST00000393043.5

CLTC-202, Transcript of clathrin heavy chain, humanhuman

TSL 1 (best) BASIC

Gene CLTC, Length 5,292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTC-202ENST00000393043 TMC1Q8TDI8 760 aa17.1■□□□□ 0.33
CLTC-202ENST00000393043 ANP32AP39687 249 aaKnown RBP17.09■□□□□ 0.33
CLTC-202ENST00000393043 CARMIL1Q5VZK9 1371 aa17.07■□□□□ 0.32
CLTC-202ENST00000393043 KDM2AQ9Y2K7 1162 aa17.06■□□□□ 0.32
CLTC-202ENST00000393043 MRS2Q9HD23 443 aa17.06■□□□□ 0.32
CLTC-202ENST00000393043 CUX2O14529 1486 aa17.06■□□□□ 0.32
CLTC-202ENST00000393043 CFDP1Q9UEE9 299 aaPredicted RBP17.04■□□□□ 0.32
CLTC-202ENST00000393043 TOP2AP11388 1531 aaKnown RBP17.04■□□□□ 0.32
CLTC-202ENST00000393043 CCNB3Q8WWL7 1395 aa17.01■□□□□ 0.31
CLTC-202ENST00000393043 SLC24A1O60721 1099 aa17.01■□□□□ 0.31
CLTC-202ENST00000393043 VPS8Q8N3P4 1428 aa17.01■□□□□ 0.31
CLTC-202ENST00000393043 ABCC8Q09428 1581 aa16.99■□□□□ 0.31
CLTC-202ENST00000393043 WDR43Q15061 677 aaKnown RBP eCLIP16.98■□□□□ 0.311e-5■■□□□ 14.2
CLTC-202ENST00000393043 HIRIP3Q9BW71 556 aaPredicted RBP16.98■□□□□ 0.31
CLTC-202ENST00000393043 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.97■□□□□ 0.31
CLTC-202ENST00000393043 KCNH8Q96L42 1107 aa16.97■□□□□ 0.31
CLTC-202ENST00000393043 ERCC6Q03468 1493 aa16.97■□□□□ 0.31
CLTC-202ENST00000393043 WIZO95785 1651 aa16.95■□□□□ 0.3
CLTC-202ENST00000393043 CCDC136Q96JN2 1154 aa16.92■□□□□ 0.3
CLTC-202ENST00000393043 TIMELESSQ9UNS1 1208 aa16.92■□□□□ 0.3
CLTC-202ENST00000393043 SALL2Q9Y467 1007 aaPredicted RBP16.92■□□□□ 0.3
CLTC-202ENST00000393043 NPM2Q86SE8 214 aaKnown RBP16.9■□□□□ 0.3
CLTC-202ENST00000393043 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.29
CLTC-202ENST00000393043 PDS5BQ9NTI5 1447 aa16.88■□□□□ 0.29
CLTC-202ENST00000393043 BCL11AQ9H165 835 aa16.88■□□□□ 0.29
CLTC-202ENST00000393043 CDCA8Q53HL2 280 aa16.87■□□□□ 0.29
CLTC-202ENST00000393043 UPF2Q9HAU5 1272 aaKnown RBP16.87■□□□□ 0.29
CLTC-202ENST00000393043 EIF4G1Q04637 1599 aaKnown RBP16.86■□□□□ 0.29
CLTC-202ENST00000393043 SIN3AQ96ST3 1273 aa16.85■□□□□ 0.29
CLTC-202ENST00000393043 RGL3Q3MIN7 710 aa16.84■□□□□ 0.29
CLTC-202ENST00000393043 ARHGAP35Q9NRY4 1499 aa16.84■□□□□ 0.29
CLTC-202ENST00000393043 CARD11Q9BXL7 1154 aa16.83■□□□□ 0.28
CLTC-202ENST00000393043 SETD5Q9C0A6 1442 aa16.83■□□□□ 0.28
CLTC-202ENST00000393043 SMARCA4P51532 1647 aa16.83■□□□□ 0.28
CLTC-202ENST00000393043 ATAD2BQ9ULI0 1458 aa16.81■□□□□ 0.28
CLTC-202ENST00000393043 FMN1Q68DA7 1419 aa16.81■□□□□ 0.28
CLTC-202ENST00000393043 CADPSQ9ULU8 1353 aa16.8■□□□□ 0.28
CLTC-202ENST00000393043 KANK4Q5T7N3 995 aaPredicted RBP16.78■□□□□ 0.28
CLTC-202ENST00000393043 PLPPR3Q6T4P5 718 aa16.76■□□□□ 0.27
CLTC-202ENST00000393043 KNSTRNQ9Y448 316 aa16.76■□□□□ 0.27
CLTC-202ENST00000393043 CARMIL2Q6F5E8 1435 aa16.74■□□□□ 0.27
CLTC-202ENST00000393043 PPP1R15AO75807 674 aaPredicted RBP16.74■□□□□ 0.27
CLTC-202ENST00000393043 RAPGEF2Q9Y4G8 1499 aa16.74■□□□□ 0.27
CLTC-202ENST00000393043 HSP90AA1P07900 732 aaKnown RBP16.72■□□□□ 0.27
CLTC-202ENST00000393043 TDRD9Q8NDG6 1382 aaKnown RBP16.72■□□□□ 0.27
CLTC-202ENST00000393043 IRX6P78412 446 aaPredicted RBP16.72■□□□□ 0.27
CLTC-202ENST00000393043 CFAP53Q96M91 514 aa16.72■□□□□ 0.27
CLTC-202ENST00000393043 RAB3GAP2Q9H2M9 1393 aa16.67■□□□□ 0.26
CLTC-202ENST00000393043 KANK1Q14678 1352 aa16.65■□□□□ 0.26
CLTC-202ENST00000393043 CCER2I3L3R5 266 aa16.65■□□□□ 0.26
CLTC-202ENST00000393043 MYH16Q9H6N6 1097 aa16.63■□□□□ 0.25
CLTC-202ENST00000393043 DCAF11Q8TEB1 546 aa16.63■□□□□ 0.25
CLTC-202ENST00000393043 SUPT16HQ9Y5B9 1047 aaKnown RBP16.63■□□□□ 0.25
CLTC-202ENST00000393043 ANP32BQ92688 251 aaKnown RBP16.62■□□□□ 0.25
CLTC-202ENST00000393043 TMF1P82094 1093 aa16.61■□□□□ 0.25
CLTC-202ENST00000393043 FHOD3Q2V2M9 1422 aa16.59■□□□□ 0.25
CLTC-202ENST00000393043 PKD2Q13563 968 aa16.58■□□□□ 0.24
CLTC-202ENST00000393043 ANKRD30AQ9BXX3 1397 aa16.57■□□□□ 0.24
CLTC-202ENST00000393043 HSPA5P11021 654 aaKnown RBP16.57■□□□□ 0.24
CLTC-202ENST00000393043 MPHOSPH9Q99550 1183 aa16.57■□□□□ 0.24
CLTC-202ENST00000393043 PPP4R2Q9NY27 417 aa16.57■□□□□ 0.24
CLTC-202ENST00000393043 NUDCQ9Y266 331 aa16.56■□□□□ 0.24
CLTC-202ENST00000393043 DDRGK1Q96HY6 314 aa16.56■□□□□ 0.24
CLTC-202ENST00000393043 RUSC2Q8N2Y8 1516 aa16.56■□□□□ 0.24
CLTC-202ENST00000393043 ARID4BQ4LE39 1312 aaPredicted RBP16.55■□□□□ 0.24
CLTC-202ENST00000393043 FANCD2Q9BXW9 1451 aa16.55■□□□□ 0.24
CLTC-202ENST00000393043 POGKQ9P215 609 aa16.54■□□□□ 0.24
CLTC-202ENST00000393043 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
CLTC-202ENST00000393043 SENP3Q9H4L4 574 aaPredicted RBP16.54■□□□□ 0.24
CLTC-202ENST00000393043 EFCAB2Q5VUJ9 269 aa16.52■□□□□ 0.24
CLTC-202ENST00000393043 MAPK8IP3Q9UPT6 1336 aa16.52■□□□□ 0.23
CLTC-202ENST00000393043 RSPH4AQ5TD94 716 aa16.51■□□□□ 0.23
CLTC-202ENST00000393043 CC2D1BQ5T0F9 858 aaKnown RBP16.51■□□□□ 0.23
CLTC-202ENST00000393043 NUP155O75694 1391 aa16.5■□□□□ 0.23
CLTC-202ENST00000393043 BECN1Q14457 450 aa16.5■□□□□ 0.23
CLTC-202ENST00000393043 NBR1Q14596 966 aa16.49■□□□□ 0.23
CLTC-202ENST00000393043 C14orf37Q86TY3 774 aa16.49■□□□□ 0.23
CLTC-202ENST00000393043 FOXD1Q16676 465 aa16.47■□□□□ 0.23
CLTC-202ENST00000393043 PPM1GO15355 546 aaPredicted RBP16.47■□□□□ 0.23
CLTC-202ENST00000393043 FTSJ3Q8IY81 847 aaKnown RBP16.47■□□□□ 0.23
CLTC-202ENST00000393043 PNNQ9H307 717 aaKnown RBP16.47■□□□□ 0.23
CLTC-202ENST00000393043 SENP3-EIF4A1A0A087X0R7 540 aa16.46■□□□□ 0.22
CLTC-202ENST00000393043 HDGFP51858 240 aaKnown RBP16.45■□□□□ 0.22
CLTC-202ENST00000393043 EIF5BO60841 1220 aaKnown RBP16.45■□□□□ 0.22
CLTC-202ENST00000393043 NCAPD3P42695 1498 aa16.45■□□□□ 0.22
CLTC-202ENST00000393043 MS4A1P11836 297 aa16.44■□□□□ 0.22
CLTC-202ENST00000393043 NEUROD2Q15784 382 aa16.44■□□□□ 0.22
CLTC-202ENST00000393043 JPH4Q96JJ6 628 aa16.44■□□□□ 0.22
CLTC-202ENST00000393043 KTN1Q86UP2 1357 aaKnown RBP16.44■□□□□ 0.22
CLTC-202ENST00000393043 CHMP4BQ9H444 224 aaKnown RBP16.43■□□□□ 0.22
CLTC-202ENST00000393043 DHX57Q6P158 1386 aaKnown RBP16.43■□□□□ 0.22
CLTC-202ENST00000393043 ROCK2O75116 1388 aaKnown RBP16.42■□□□□ 0.22
CLTC-202ENST00000393043 IGF1RP08069 1367 aa16.42■□□□□ 0.22
CLTC-202ENST00000393043 ZBTB7CA1YPR0 619 aa16.42■□□□□ 0.22
CLTC-202ENST00000393043 FGD5Q6ZNL6 1462 aa16.41■□□□□ 0.22
CLTC-202ENST00000393043 RALBP1Q15311 655 aa16.41■□□□□ 0.22
CLTC-202ENST00000393043 L3MBTL2Q969R5 705 aa16.4■□□□□ 0.22
CLTC-202ENST00000393043 TNNT2P45379 298 aaPredicted RBP16.39■□□□□ 0.21
CLTC-202ENST00000393043 ERICH6BQ5W0A0 696 aa16.39■□□□□ 0.21
CLTC-202ENST00000393043 GGT6Q6P531 493 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms