RNA–Protein interactions for RNA: ENST00000393043.5

CLTC-202, Transcript of clathrin heavy chain, humanhuman

TSL 1 (best) BASIC

Gene CLTC, Length 5,292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTC-202ENST00000393043 NISCHQ9Y2I1 1504 aa22.29■■□□□ 1.16
CLTC-202ENST00000393043 DCAF8L2P0C7V8 631 aa22.01■■□□□ 1.11
CLTC-202ENST00000393043 SUPT5HO00267 1087 aaKnown RBP21.07■□□□□ 0.96
CLTC-202ENST00000393043 SHROOM4Q9ULL8 1493 aa20.84■□□□□ 0.93
CLTC-202ENST00000393043 EHMT2Q96KQ7 1210 aa20■□□□□ 0.79
CLTC-202ENST00000393043 APLP2Q06481 763 aa19.84■□□□□ 0.77
CLTC-202ENST00000393043 FAM9AQ8IZU1 332 aaPredicted RBP19.76■□□□□ 0.75
CLTC-202ENST00000393043 TRIM41Q8WV44 630 aa19.65■□□□□ 0.74
CLTC-202ENST00000393043 PCGF6Q9BYE7 350 aa19.58■□□□□ 0.72
CLTC-202ENST00000393043 PELP1Q8IZL8 1130 aaKnown RBP19.41■□□□□ 0.7
CLTC-202ENST00000393043 ZEB1P37275 1124 aaPredicted RBP19.4■□□□□ 0.7
CLTC-202ENST00000393043 TTBK1Q5TCY1 1321 aaPredicted RBP19.34■□□□□ 0.69
CLTC-202ENST00000393043 UBTFP17480 764 aaKnown RBP19.27■□□□□ 0.68
CLTC-202ENST00000393043 RANGAP1P46060 587 aaPredicted RBP19.21■□□□□ 0.67
CLTC-202ENST00000393043 CCER1Q8TC90 406 aaPredicted RBP19.19■□□□□ 0.66
CLTC-202ENST00000393043 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
CLTC-202ENST00000393043 ATP1B4Q9UN42 357 aaPredicted RBP19.05■□□□□ 0.64
CLTC-202ENST00000393043 CENPBP07199 599 aaPredicted RBP19.02■□□□□ 0.64
CLTC-202ENST00000393043 TRIM26Q12899 539 aaPredicted RBP19.01■□□□□ 0.63
CLTC-202ENST00000393043 LOC105371045A0A1W2PR82 267 aa18.83■□□□□ 0.6
CLTC-202ENST00000393043 ABCC9O60706 1549 aa18.82■□□□□ 0.6
CLTC-202ENST00000393043 PPARGC1BQ86YN6 1023 aaKnown RBP18.8■□□□□ 0.6
CLTC-202ENST00000393043 HRCP23327 699 aa18.76■□□□□ 0.59
CLTC-202ENST00000393043 PABPN1Q86U42 306 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLTC-202ENST00000393043 NEFLP07196 543 aa18.52■□□□□ 0.56
CLTC-202ENST00000393043 ZCCHC6Q5VYS8 1495 aaKnown RBP18.52■□□□□ 0.56
CLTC-202ENST00000393043 YTHDC1Q96MU7 727 aaKnown RBP18.49■□□□□ 0.55
CLTC-202ENST00000393043 ITGAEP38570 1179 aa18.49■□□□□ 0.55
CLTC-202ENST00000393043 HNRNPUL2Q1KMD3 747 aaKnown RBP18.48■□□□□ 0.55
CLTC-202ENST00000393043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.44■□□□□ 0.54
CLTC-202ENST00000393043 CCDC180Q9P1Z9 1646 aa18.43■□□□□ 0.54
CLTC-202ENST00000393043 ERICH6Q7L0X2 663 aa18.43■□□□□ 0.54
CLTC-202ENST00000393043 SCRIBQ14160 1630 aa18.23■□□□□ 0.51
CLTC-202ENST00000393043 MYT1LQ9UL68 1186 aa18.21■□□□□ 0.51
CLTC-202ENST00000393043 CSRNP3Q8WYN3 585 aa18.17■□□□□ 0.5
CLTC-202ENST00000393043 FAM50AQ14320 339 aaKnown RBP18.16■□□□□ 0.5
CLTC-202ENST00000393043 DIEXFQ68CQ4 756 aaKnown RBP18.14■□□□□ 0.49
CLTC-202ENST00000393043 POLR3GLQ9BT43 218 aa18.11■□□□□ 0.49
CLTC-202ENST00000393043 MYT1Q01538 1121 aa18.05■□□□□ 0.48
CLTC-202ENST00000393043 TRIM52Q96A61 297 aa17.99■□□□□ 0.47
CLTC-202ENST00000393043 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.47
CLTC-202ENST00000393043 NEUROD1Q13562 356 aa17.92■□□□□ 0.46
CLTC-202ENST00000393043 RB1CC1Q8TDY2 1594 aa17.9■□□□□ 0.46
CLTC-202ENST00000393043 ZNF316A6NFI3 1004 aaPredicted RBP17.86■□□□□ 0.45
CLTC-202ENST00000393043 CNGB1Q14028 1251 aaPredicted RBP17.85■□□□□ 0.45
CLTC-202ENST00000393043 FBLN2P98095 1184 aa17.84■□□□□ 0.45
CLTC-202ENST00000393043 NACADO15069 1562 aa17.83■□□□□ 0.45
CLTC-202ENST00000393043 P3H3Q8IVL6 736 aa17.82■□□□□ 0.44
CLTC-202ENST00000393043 RSF1Q96T23 1441 aaPredicted RBP17.8■□□□□ 0.44
CLTC-202ENST00000393043 DAXXQ9UER7 740 aaPredicted RBP17.8■□□□□ 0.44
CLTC-202ENST00000393043 ANP32CO43423 234 aa17.78■□□□□ 0.44
CLTC-202ENST00000393043 CDK11AQ9UQ88 783 aaPredicted RBP17.75■□□□□ 0.43
CLTC-202ENST00000393043 SLC4A1APQ9BWU0 796 aaKnown RBP17.72■□□□□ 0.43
CLTC-202ENST00000393043 EEA1Q15075 1411 aa17.68■□□□□ 0.42
CLTC-202ENST00000393043 ZNF326Q5BKZ1 582 aaKnown RBP17.67■□□□□ 0.42
CLTC-202ENST00000393043 GTF3C3Q9Y5Q9 886 aa17.62■□□□□ 0.41
CLTC-202ENST00000393043 ARID3CA6NKF2 412 aa17.61■□□□□ 0.41
CLTC-202ENST00000393043 CLIP1P30622 1438 aa17.57■□□□□ 0.4
CLTC-202ENST00000393043 ZNF777Q9ULD5 760 aaPredicted RBP17.56■□□□□ 0.4
CLTC-202ENST00000393043 MYO15BQ96JP2 1530 aa17.55■□□□□ 0.4
CLTC-202ENST00000393043 GOLGA3Q08378 1498 aa17.54■□□□□ 0.4
CLTC-202ENST00000393043 BAZ1AQ9NRL2 1556 aaPredicted RBP17.53■□□□□ 0.4
CLTC-202ENST00000393043 TONSLQ96HA7 1378 aa17.53■□□□□ 0.4
CLTC-202ENST00000393043 WRNQ14191 1432 aaPredicted RBP eCLIP17.52■□□□□ 0.41e-7■■■■■ 66.8
CLTC-202ENST00000393043 ACIN1Q9UKV3 1341 aaKnown RBP17.52■□□□□ 0.4
CLTC-202ENST00000393043 BAZ1BQ9UIG0 1483 aaKnown RBP17.52■□□□□ 0.4
CLTC-202ENST00000393043 CLSPNQ9HAW4 1339 aa17.5■□□□□ 0.39
CLTC-202ENST00000393043 CEP162Q5TB80 1403 aa17.47■□□□□ 0.39
CLTC-202ENST00000393043 BCANQ96GW7 911 aa17.44■□□□□ 0.38
CLTC-202ENST00000393043 MTUS2Q5JR59 1369 aa17.43■□□□□ 0.38
CLTC-202ENST00000393043 TNIKQ9UKE5 1360 aa17.42■□□□□ 0.38
CLTC-202ENST00000393043 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
CLTC-202ENST00000393043 CEP164Q9UPV0 1460 aa17.4■□□□□ 0.38
CLTC-202ENST00000393043 KIF27Q86VH2 1401 aa17.39■□□□□ 0.37
CLTC-202ENST00000393043 CECR2Q9BXF3 1484 aa17.38■□□□□ 0.37
CLTC-202ENST00000393043 CHMP7Q8WUX9 453 aaPredicted RBP17.33■□□□□ 0.36
CLTC-202ENST00000393043 CHIC2Q9UKJ5 165 aa17.32■□□□□ 0.36
CLTC-202ENST00000393043 TSPY4P0CV99 314 aa17.3■□□□□ 0.36
CLTC-202ENST00000393043 TSPY10P0CW01 314 aa17.3■□□□□ 0.36
CLTC-202ENST00000393043 NPM1P06748 294 aaKnown RBP eCLIP17.3■□□□□ 0.36
CLTC-202ENST00000393043 DDX10Q13206 875 aaKnown RBP17.29■□□□□ 0.36
CLTC-202ENST00000393043 NEFMP07197 916 aa17.29■□□□□ 0.36
CLTC-202ENST00000393043 CANXP27824 592 aaKnown RBP17.25■□□□□ 0.35
CLTC-202ENST00000393043 ZBTB47Q9UFB7 747 aaPredicted RBP17.24■□□□□ 0.35
CLTC-202ENST00000393043 MROH2BQ7Z745 1585 aa17.21■□□□□ 0.35
CLTC-202ENST00000393043 HNRNPUQ00839 825 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLTC-202ENST00000393043 ESF1Q9H501 851 aaKnown RBP17.19■□□□□ 0.34
CLTC-202ENST00000393043 CHGAP10645 457 aaKnown RBP17.16■□□□□ 0.34
CLTC-202ENST00000393043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.15■□□□□ 0.344e-7■■□□□ 13.9
CLTC-202ENST00000393043 PLEKHD1A6NEE1 506 aa17.15■□□□□ 0.34
CLTC-202ENST00000393043 FKBP8Q14318 412 aa17.15■□□□□ 0.34
CLTC-202ENST00000393043 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
CLTC-202ENST00000393043 RRP7BPQ9NSQ0 103 aa17.13■□□□□ 0.33
CLTC-202ENST00000393043 FAM9BQ8IZU0 186 aa17.13■□□□□ 0.33
CLTC-202ENST00000393043 EIF4G2P78344 907 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLTC-202ENST00000393043 STAG3Q9UJ98 1225 aa17.12■□□□□ 0.33
CLTC-202ENST00000393043 SMARCA2P51531 1590 aa17.12■□□□□ 0.33
CLTC-202ENST00000393043 SOGA1O94964 1423 aa17.12■□□□□ 0.33
CLTC-202ENST00000393043 FHAD1B1AJZ9 1412 aa17.11■□□□□ 0.33
CLTC-202ENST00000393043 MIER1Q8N108 512 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms