RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 PCF11O94913 1555 aaKnown RBP28.8■■■□□ 2.2
SHROOM1-202ENST00000378676 POLA1P09884 1462 aaPredicted RBP28.8■■■□□ 2.2
SHROOM1-202ENST00000378676 ABCA10Q8WWZ4 1543 aa28.8■■■□□ 2.2
SHROOM1-202ENST00000378676 MIER1Q8N108 512 aa28.8■■■□□ 2.2
SHROOM1-202ENST00000378676 GTF3C3Q9Y5Q9 886 aa28.76■■■□□ 2.19
SHROOM1-202ENST00000378676 LRRC9Q6ZRR7 1453 aa28.75■■■□□ 2.19
SHROOM1-202ENST00000378676 CTTNBP2Q8WZ74 1663 aa28.73■■■□□ 2.19
SHROOM1-202ENST00000378676 CUL7Q14999 1698 aa28.72■■■□□ 2.19
SHROOM1-202ENST00000378676 PDS5BQ9NTI5 1447 aa28.71■■■□□ 2.19
SHROOM1-202ENST00000378676 WDR97A6NE52 1622 aa28.71■■■□□ 2.19
SHROOM1-202ENST00000378676 ITGAEP38570 1179 aa28.7■■■□□ 2.19
SHROOM1-202ENST00000378676 FHAD1B1AJZ9 1412 aa28.69■■■□□ 2.18
SHROOM1-202ENST00000378676 YTHDC1Q96MU7 727 aaKnown RBP28.68■■■□□ 2.18
SHROOM1-202ENST00000378676 PHLDB1Q86UU1 1377 aa28.65■■■□□ 2.18
SHROOM1-202ENST00000378676 FHOD3Q2V2M9 1422 aa28.64■■■□□ 2.18
SHROOM1-202ENST00000378676 P3H3Q8IVL6 736 aa28.64■■■□□ 2.18
SHROOM1-202ENST00000378676 EFCAB5A4FU69 1503 aa28.63■■■□□ 2.17
SHROOM1-202ENST00000378676 RAB3GAP2Q9H2M9 1393 aa28.62■■■□□ 2.17
SHROOM1-202ENST00000378676 URB2Q14146 1524 aaKnown RBP28.61■■■□□ 2.17
SHROOM1-202ENST00000378676 MYT1Q01538 1121 aa28.6■■■□□ 2.17
SHROOM1-202ENST00000378676 MAPKBP1O60336 1514 aa28.6■■■□□ 2.17
SHROOM1-202ENST00000378676 KIF21AQ7Z4S6 1674 aa28.58■■■□□ 2.17
SHROOM1-202ENST00000378676 FYCO1Q9BQS8 1478 aa28.58■■■□□ 2.17
SHROOM1-202ENST00000378676 ABCA5Q8WWZ7 1642 aa28.55■■■□□ 2.16
SHROOM1-202ENST00000378676 CASKIN1Q8WXD9 1431 aa28.51■■■□□ 2.15
SHROOM1-202ENST00000378676 SETD5Q9C0A6 1442 aa28.5■■■□□ 2.15
SHROOM1-202ENST00000378676 AQRO60306 1485 aaKnown RBP eCLIP28.5■■■□□ 2.15
SHROOM1-202ENST00000378676 ATP1B4Q9UN42 357 aaPredicted RBP28.47■■■□□ 2.15
SHROOM1-202ENST00000378676 LRRIQ1Q96JM4 1722 aa28.46■■■□□ 2.15
SHROOM1-202ENST00000378676 FAM50AQ14320 339 aaKnown RBP28.44■■■□□ 2.14
SHROOM1-202ENST00000378676 SNAPC4Q5SXM2 1469 aa28.43■■■□□ 2.14
SHROOM1-202ENST00000378676 SAMD9Q5K651 1589 aa28.43■■■□□ 2.14
SHROOM1-202ENST00000378676 TDRD9Q8NDG6 1382 aaKnown RBP28.4■■■□□ 2.14
SHROOM1-202ENST00000378676 GAPVD1Q14C86 1478 aa28.38■■■□□ 2.13
SHROOM1-202ENST00000378676 FMN1Q68DA7 1419 aa28.37■■■□□ 2.13
SHROOM1-202ENST00000378676 MRC2Q9UBG0 1479 aa28.32■■■□□ 2.12
SHROOM1-202ENST00000378676 TARBP1Q13395 1621 aaKnown RBP28.31■■■□□ 2.12
SHROOM1-202ENST00000378676 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.29■■■□□ 2.12
SHROOM1-202ENST00000378676 FGD6Q6ZV73 1430 aa28.28■■■□□ 2.12
SHROOM1-202ENST00000378676 GRIN2BQ13224 1484 aa28.25■■■□□ 2.11
SHROOM1-202ENST00000378676 PBRM1Q86U86 1689 aa28.25■■■□□ 2.11
SHROOM1-202ENST00000378676 SIN3AQ96ST3 1273 aa28.24■■■□□ 2.11
SHROOM1-202ENST00000378676 THOC2Q8NI27 1593 aaKnown RBP28.22■■■□□ 2.11
SHROOM1-202ENST00000378676 MTUS2Q5JR59 1369 aa28.21■■■□□ 2.11
SHROOM1-202ENST00000378676 ERCC6Q03468 1493 aa28.21■■■□□ 2.11
SHROOM1-202ENST00000378676 SUPT6HQ7KZ85 1726 aaKnown RBP28.18■■■□□ 2.1
SHROOM1-202ENST00000378676 WDR62O43379 1518 aa28.17■■■□□ 2.1
SHROOM1-202ENST00000378676 NCOA2Q15596 1464 aa28.15■■■□□ 2.1
SHROOM1-202ENST00000378676 PTPRKQ15262 1439 aa28.14■■■□□ 2.1
SHROOM1-202ENST00000378676 EHBP1L1Q8N3D4 1523 aa28.14■■■□□ 2.1
SHROOM1-202ENST00000378676 PTPN23Q9H3S7 1636 aa28.14■■■□□ 2.09
SHROOM1-202ENST00000378676 CCDC18Q5T9S5 1454 aa28.12■■■□□ 2.09
SHROOM1-202ENST00000378676 MAGI3Q5TCQ9 1506 aa28.11■■■□□ 2.09
SHROOM1-202ENST00000378676 MYOM3Q5VTT5 1437 aa28.1■■■□□ 2.09
SHROOM1-202ENST00000378676 ADAMTS12P58397 1594 aa28.08■■■□□ 2.09
SHROOM1-202ENST00000378676 HFM1A2PYH4 1435 aa28.07■■■□□ 2.08
SHROOM1-202ENST00000378676 UGGT2Q9NYU1 1516 aa28.07■■■□□ 2.08
SHROOM1-202ENST00000378676 ARHGEF11O15085 1522 aa28.05■■■□□ 2.08
SHROOM1-202ENST00000378676 IQGAP2Q13576 1575 aa28.05■■■□□ 2.08
SHROOM1-202ENST00000378676 HECW1Q76N89 1606 aa28.03■■■□□ 2.08
SHROOM1-202ENST00000378676 TIMELESSQ9UNS1 1208 aa28.01■■■□□ 2.07
SHROOM1-202ENST00000378676 NAIPQ13075 1403 aa28■■■□□ 2.07
SHROOM1-202ENST00000378676 IFT140Q96RY7 1462 aa28■■■□□ 2.07
SHROOM1-202ENST00000378676 UACAQ9BZF9 1416 aa27.99■■■□□ 2.07
SHROOM1-202ENST00000378676 PPP1R15AO75807 674 aaPredicted RBP27.95■■■□□ 2.07
SHROOM1-202ENST00000378676 KCNH8Q96L42 1107 aa27.94■■■□□ 2.06
SHROOM1-202ENST00000378676 GCC2Q8IWJ2 1684 aa27.94■■■□□ 2.06
SHROOM1-202ENST00000378676 EPRSP07814 1512 aaKnown RBP27.91■■■□□ 2.06
SHROOM1-202ENST00000378676 CDK13Q14004 1512 aaKnown RBP27.91■■■□□ 2.06
SHROOM1-202ENST00000378676 TCOF1Q13428 1488 aaKnown RBP27.91■■■□□ 2.06
SHROOM1-202ENST00000378676 DDX10Q13206 875 aaKnown RBP27.91■■■□□ 2.06
SHROOM1-202ENST00000378676 HIRIP3Q9BW71 556 aaPredicted RBP27.87■■■□□ 2.05
SHROOM1-202ENST00000378676 TONSLQ96HA7 1378 aa27.87■■■□□ 2.05
SHROOM1-202ENST00000378676 ZNF608Q9ULD9 1512 aaPredicted RBP27.85■■■□□ 2.05
SHROOM1-202ENST00000378676 KDM6BO15054 1643 aa27.83■■■□□ 2.05
SHROOM1-202ENST00000378676 KDM5BQ9UGL1 1544 aa27.83■■■□□ 2.05
SHROOM1-202ENST00000378676 SUPT16HQ9Y5B9 1047 aaKnown RBP27.78■■■□□ 2.04
SHROOM1-202ENST00000378676 KIAA0556O60303 1618 aa27.77■■■□□ 2.04
SHROOM1-202ENST00000378676 DENND4BO75064 1496 aaPredicted RBP27.77■■■□□ 2.04
SHROOM1-202ENST00000378676 RRP7BPQ9NSQ0 103 aa27.77■■■□□ 2.04
SHROOM1-202ENST00000378676 CHIC2Q9UKJ5 165 aa27.75■■■□□ 2.03
SHROOM1-202ENST00000378676 EIF4G3O43432 1585 aaKnown RBP27.75■■■□□ 2.03
SHROOM1-202ENST00000378676 AKNAQ7Z591 1439 aa27.74■■■□□ 2.03
SHROOM1-202ENST00000378676 ARID3CA6NKF2 412 aa27.74■■■□□ 2.03
SHROOM1-202ENST00000378676 MIA2Q96PC5 1412 aa27.72■■■□□ 2.03
SHROOM1-202ENST00000378676 DISP1Q96F81 1524 aa27.72■■■□□ 2.03
SHROOM1-202ENST00000378676 KIAA0586Q9BVV6 1533 aa27.68■■■□□ 2.02
SHROOM1-202ENST00000378676 RAPGEF6Q8TEU7 1601 aa27.67■■■□□ 2.02
SHROOM1-202ENST00000378676 NUP153P49790 1475 aaKnown RBP27.64■■■□□ 2.02
SHROOM1-202ENST00000378676 GRIN2AQ12879 1464 aa27.64■■■□□ 2.02
SHROOM1-202ENST00000378676 DNMT1P26358 1616 aaKnown RBP27.62■■■□□ 2.01
SHROOM1-202ENST00000378676 TRIM52Q96A61 297 aa27.59■■■□□ 2.01
SHROOM1-202ENST00000378676 DAPK1P53355 1430 aa27.58■■■□□ 2.01
SHROOM1-202ENST00000378676 ANP32CO43423 234 aa27.58■■■□□ 2.01
SHROOM1-202ENST00000378676 MAGI1Q96QZ7 1491 aaPredicted RBP27.57■■■□□ 2
SHROOM1-202ENST00000378676 CCER2I3L3R5 266 aa27.57■■■□□ 2
SHROOM1-202ENST00000378676 CEP170Q5SW79 1584 aa27.53■■■□□ 2
SHROOM1-202ENST00000378676 ABCC5O15440 1437 aa27.52■■■□□ 2
SHROOM1-202ENST00000378676 MPHOSPH9Q99550 1183 aa27.52■■■□□ 2
SHROOM1-202ENST00000378676 ROCK1Q13464 1354 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms