RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 NISCHQ9Y2I1 1504 aa40.99■■■■■ 4.15
SHROOM1-202ENST00000378676 CCDC180Q9P1Z9 1646 aa35.03■■■■□ 3.2
SHROOM1-202ENST00000378676 SHROOM4Q9ULL8 1493 aa34.77■■■■□ 3.16
SHROOM1-202ENST00000378676 ZCCHC6Q5VYS8 1495 aaKnown RBP34.7■■■■□ 3.15
SHROOM1-202ENST00000378676 SUPT5HO00267 1087 aaKnown RBP33.99■■■■□ 3.03
SHROOM1-202ENST00000378676 DCAF8L2P0C7V8 631 aa33.73■■■□□ 2.99
SHROOM1-202ENST00000378676 DCAF1Q9Y4B6 1507 aa33.67■■■□□ 2.98
SHROOM1-202ENST00000378676 MYO15BQ96JP2 1530 aa33.1■■■□□ 2.89
SHROOM1-202ENST00000378676 CHIC1Q5VXU3 224 aa33.08■■■□□ 2.89
SHROOM1-202ENST00000378676 ABCC9O60706 1549 aa32.9■■■□□ 2.86
SHROOM1-202ENST00000378676 SCRIBQ14160 1630 aa32.74■■■□□ 2.83
SHROOM1-202ENST00000378676 NACADO15069 1562 aa32.47■■■□□ 2.79
SHROOM1-202ENST00000378676 RSF1Q96T23 1441 aaPredicted RBP32.36■■■□□ 2.77
SHROOM1-202ENST00000378676 RB1CC1Q8TDY2 1594 aa32.16■■■□□ 2.74
SHROOM1-202ENST00000378676 LOC105371045A0A1W2PR82 267 aa32.05■■■□□ 2.72
SHROOM1-202ENST00000378676 CECR2Q9BXF3 1484 aa31.96■■■□□ 2.71
SHROOM1-202ENST00000378676 HRCP23327 699 aa31.94■■■□□ 2.7
SHROOM1-202ENST00000378676 PCGF6Q9BYE7 350 aa31.93■■■□□ 2.7
SHROOM1-202ENST00000378676 MROH2BQ7Z745 1585 aa31.88■■■□□ 2.69
SHROOM1-202ENST00000378676 WIZO95785 1651 aa31.77■■■□□ 2.68
SHROOM1-202ENST00000378676 TRIM41Q8WV44 630 aa31.66■■■□□ 2.66
SHROOM1-202ENST00000378676 BAZ1AQ9NRL2 1556 aaPredicted RBP31.58■■■□□ 2.65
SHROOM1-202ENST00000378676 UNC13AQ9UPW8 1703 aa31.55■■■□□ 2.64
SHROOM1-202ENST00000378676 FAM9AQ8IZU1 332 aaPredicted RBP31.41■■■□□ 2.62
SHROOM1-202ENST00000378676 EIF4G1Q04637 1599 aaKnown RBP31.4■■■□□ 2.62
SHROOM1-202ENST00000378676 TRIM26Q12899 539 aaPredicted RBP31.35■■■□□ 2.61
SHROOM1-202ENST00000378676 SMARCA4P51532 1647 aa31.31■■■□□ 2.6
SHROOM1-202ENST00000378676 PPARGC1BQ86YN6 1023 aaKnown RBP31.3■■■□□ 2.6
SHROOM1-202ENST00000378676 TOP2AP11388 1531 aaKnown RBP31.24■■■□□ 2.59
SHROOM1-202ENST00000378676 BICRAQ9NZM4 1560 aa31.19■■■□□ 2.58
SHROOM1-202ENST00000378676 EHMT2Q96KQ7 1210 aa31.12■■■□□ 2.57
SHROOM1-202ENST00000378676 SMARCA2P51531 1590 aa31.09■■■□□ 2.57
SHROOM1-202ENST00000378676 PABPN1Q86U42 306 aaKnown RBP eCLIP31.06■■■□□ 2.56
SHROOM1-202ENST00000378676 CCDC88BA6NC98 1476 aa31.04■■■□□ 2.56
SHROOM1-202ENST00000378676 ABCC8Q09428 1581 aa30.99■■■□□ 2.55
SHROOM1-202ENST00000378676 PEG3Q9GZU2 1588 aa30.7■■■□□ 2.51
SHROOM1-202ENST00000378676 SOGA1O94964 1423 aa30.6■■■□□ 2.49
SHROOM1-202ENST00000378676 ZEB1P37275 1124 aaPredicted RBP30.6■■■□□ 2.49
SHROOM1-202ENST00000378676 RUSC2Q8N2Y8 1516 aa30.49■■■□□ 2.47
SHROOM1-202ENST00000378676 CEP162Q5TB80 1403 aa30.44■■■□□ 2.46
SHROOM1-202ENST00000378676 EEA1Q15075 1411 aa30.43■■■□□ 2.46
SHROOM1-202ENST00000378676 ATAD2BQ9ULI0 1458 aa30.42■■■□□ 2.46
SHROOM1-202ENST00000378676 WRNQ14191 1432 aaPredicted RBP eCLIP30.4■■■□□ 2.46
SHROOM1-202ENST00000378676 SYNJ1O43426 1573 aa30.37■■■□□ 2.45
SHROOM1-202ENST00000378676 TNIKQ9UKE5 1360 aa30.37■■■□□ 2.45
SHROOM1-202ENST00000378676 BAZ1BQ9UIG0 1483 aaKnown RBP30.33■■■□□ 2.45
SHROOM1-202ENST00000378676 CSRNP3Q8WYN3 585 aa30.32■■■□□ 2.44
SHROOM1-202ENST00000378676 GOLGA3Q08378 1498 aa30.26■■■□□ 2.43
SHROOM1-202ENST00000378676 UBTFP17480 764 aaKnown RBP30.15■■■□□ 2.42
SHROOM1-202ENST00000378676 KIF21BO75037 1637 aa30.15■■■□□ 2.42
SHROOM1-202ENST00000378676 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.13■■■□□ 2.41
SHROOM1-202ENST00000378676 TTBK1Q5TCY1 1321 aaPredicted RBP30.13■■■□□ 2.41
SHROOM1-202ENST00000378676 CEP164Q9UPV0 1460 aa30.08■■■□□ 2.41
SHROOM1-202ENST00000378676 CCER1Q8TC90 406 aaPredicted RBP30■■■□□ 2.39
SHROOM1-202ENST00000378676 TOP2BQ02880 1626 aa29.99■■■□□ 2.39
SHROOM1-202ENST00000378676 NCAPD3P42695 1498 aa29.97■■■□□ 2.39
SHROOM1-202ENST00000378676 BIVM-ERCC5R4GMW8 1640 aa29.95■■■□□ 2.39
SHROOM1-202ENST00000378676 HMGXB3Q12766 1538 aa29.92■■■□□ 2.38
SHROOM1-202ENST00000378676 RAPGEF2Q9Y4G8 1499 aa29.88■■■□□ 2.37
SHROOM1-202ENST00000378676 CLIP1P30622 1438 aa29.87■■■□□ 2.37
SHROOM1-202ENST00000378676 CC2D2AQ9P2K1 1620 aa29.78■■■□□ 2.36
SHROOM1-202ENST00000378676 VPS8Q8N3P4 1428 aa29.76■■■□□ 2.35
SHROOM1-202ENST00000378676 CUX1P39880 1505 aa29.69■■■□□ 2.34
SHROOM1-202ENST00000378676 PELP1Q8IZL8 1130 aaKnown RBP29.69■■■□□ 2.34
SHROOM1-202ENST00000378676 ERICH3Q5RHP9 1530 aa29.64■■■□□ 2.34
SHROOM1-202ENST00000378676 PRXQ9BXM0 1461 aa29.6■■■□□ 2.33
SHROOM1-202ENST00000378676 PRDM2Q13029 1718 aa29.6■■■□□ 2.33
SHROOM1-202ENST00000378676 CFTRP13569 1480 aa29.58■■■□□ 2.33
SHROOM1-202ENST00000378676 RANGAP1P46060 587 aaPredicted RBP29.57■■■□□ 2.32
SHROOM1-202ENST00000378676 ARAP1Q96P48 1450 aa29.49■■■□□ 2.31
SHROOM1-202ENST00000378676 HNRNPUL2Q1KMD3 747 aaKnown RBP29.47■■■□□ 2.31
SHROOM1-202ENST00000378676 KIF27Q86VH2 1401 aa29.43■■■□□ 2.3
SHROOM1-202ENST00000378676 APLP2Q06481 763 aa29.43■■■□□ 2.3
SHROOM1-202ENST00000378676 SCAF1Q9H7N4 1312 aaKnown RBP29.39■■■□□ 2.3
SHROOM1-202ENST00000378676 DIEXFQ68CQ4 756 aaKnown RBP29.39■■■□□ 2.29
SHROOM1-202ENST00000378676 ZNF316A6NFI3 1004 aaPredicted RBP29.21■■■□□ 2.27
SHROOM1-202ENST00000378676 ARHGAP35Q9NRY4 1499 aa29.21■■■□□ 2.27
SHROOM1-202ENST00000378676 CADPSQ9ULU8 1353 aa29.21■■■□□ 2.27
SHROOM1-202ENST00000378676 CUX2O14529 1486 aa29.2■■■□□ 2.26
SHROOM1-202ENST00000378676 KANK4Q5T7N3 995 aaPredicted RBP29.18■■■□□ 2.26
SHROOM1-202ENST00000378676 FGD5Q6ZNL6 1462 aa29.15■■■□□ 2.26
SHROOM1-202ENST00000378676 ACIN1Q9UKV3 1341 aaKnown RBP29.12■■■□□ 2.25
SHROOM1-202ENST00000378676 NEUROD1Q13562 356 aa29.1■■■□□ 2.25
SHROOM1-202ENST00000378676 IGF1RP08069 1367 aa29.1■■■□□ 2.25
SHROOM1-202ENST00000378676 RRBP1Q9P2E9 1410 aaKnown RBP29.06■■■□□ 2.24
SHROOM1-202ENST00000378676 DNAJC5BQ9UF47 199 aa29.01■■■□□ 2.23
SHROOM1-202ENST00000378676 DHX57Q6P158 1386 aaKnown RBP28.99■■■□□ 2.23
SHROOM1-202ENST00000378676 FANCD2Q9BXW9 1451 aa28.98■■■□□ 2.23
SHROOM1-202ENST00000378676 CARMIL1Q5VZK9 1371 aa28.97■■■□□ 2.23
SHROOM1-202ENST00000378676 TIAM1Q13009 1591 aa28.94■■■□□ 2.22
SHROOM1-202ENST00000378676 LAMC3Q9Y6N6 1575 aa28.93■■■□□ 2.22
SHROOM1-202ENST00000378676 NESP48681 1621 aa28.92■■■□□ 2.22
SHROOM1-202ENST00000378676 CENPBP07199 599 aaPredicted RBP28.91■■■□□ 2.22
SHROOM1-202ENST00000378676 DNMBPQ6XZF7 1577 aa28.91■■■□□ 2.22
SHROOM1-202ENST00000378676 CCNB3Q8WWL7 1395 aa28.89■■■□□ 2.21
SHROOM1-202ENST00000378676 CLSPNQ9HAW4 1339 aa28.87■■■□□ 2.21
SHROOM1-202ENST00000378676 MAP3K1Q13233 1512 aa28.85■■■□□ 2.21
SHROOM1-202ENST00000378676 RAD54L2Q9Y4B4 1467 aa28.83■■■□□ 2.21
SHROOM1-202ENST00000378676 CFAP43Q8NDM7 1665 aa28.82■■■□□ 2.2
SHROOM1-202ENST00000378676 TOPBP1Q92547 1522 aa28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms