RNA–Protein interactions for RNA: ENST00000377390.7

SF1-204, Transcript of splicing factor 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SF1, Length 3,470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-204ENST00000377390 VPS8Q8N3P4 1428 aa16.92■□□□□ 0.3
SF1-204ENST00000377390 POLR3GLQ9BT43 218 aa16.91■□□□□ 0.3
SF1-204ENST00000377390 RAPGEF2Q9Y4G8 1499 aa16.91■□□□□ 0.3
SF1-204ENST00000377390 UNC13AQ9UPW8 1703 aa16.91■□□□□ 0.3
SF1-204ENST00000377390 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.9■□□□□ 0.3
SF1-204ENST00000377390 CEP164Q9UPV0 1460 aa16.87■□□□□ 0.29
SF1-204ENST00000377390 TDRD9Q8NDG6 1382 aaKnown RBP16.86■□□□□ 0.29
SF1-204ENST00000377390 EIF5BO60841 1220 aaKnown RBP16.85■□□□□ 0.29
SF1-204ENST00000377390 RTL5Q5HYW3 569 aaPredicted RBP16.85■□□□□ 0.29
SF1-204ENST00000377390 SENP3-EIF4A1A0A087X0R7 540 aa16.84■□□□□ 0.29
SF1-204ENST00000377390 ZNF777Q9ULD5 760 aaPredicted RBP16.83■□□□□ 0.28
SF1-204ENST00000377390 SALL2Q9Y467 1007 aaPredicted RBP16.82■□□□□ 0.28
SF1-204ENST00000377390 CUX2O14529 1486 aa16.81■□□□□ 0.28
SF1-204ENST00000377390 FAM9BQ8IZU0 186 aa16.81■□□□□ 0.28
SF1-204ENST00000377390 B4GALNT3Q6L9W6 998 aa16.8■□□□□ 0.28
SF1-204ENST00000377390 NESP48681 1621 aa16.79■□□□□ 0.28
SF1-204ENST00000377390 SYNJ1O43426 1573 aa16.77■□□□□ 0.28
SF1-204ENST00000377390 ZNF326Q5BKZ1 582 aaKnown RBP16.76■□□□□ 0.27
SF1-204ENST00000377390 CCNB3Q8WWL7 1395 aa16.75■□□□□ 0.27
SF1-204ENST00000377390 RAB3GAP2Q9H2M9 1393 aa16.75■□□□□ 0.27
SF1-204ENST00000377390 SENP3Q9H4L4 574 aaPredicted RBP16.72■□□□□ 0.27
SF1-204ENST00000377390 RRP7BPQ9NSQ0 103 aa16.72■□□□□ 0.27
SF1-204ENST00000377390 EIF4G1Q04637 1599 aaKnown RBP16.7■□□□□ 0.26
SF1-204ENST00000377390 RAD54L2Q9Y4B4 1467 aa16.7■□□□□ 0.26
SF1-204ENST00000377390 NPM2Q86SE8 214 aaKnown RBP16.7■□□□□ 0.26
SF1-204ENST00000377390 TONSLQ96HA7 1378 aa16.69■□□□□ 0.26
SF1-204ENST00000377390 KIF27Q86VH2 1401 aa16.68■□□□□ 0.26
SF1-204ENST00000377390 MYT1LQ9UL68 1186 aa16.68■□□□□ 0.26
SF1-204ENST00000377390 CCER2I3L3R5 266 aa16.67■□□□□ 0.26
SF1-204ENST00000377390 PPP1R15AO75807 674 aaPredicted RBP16.66■□□□□ 0.26
SF1-204ENST00000377390 IL27Q8NEV9 243 aa16.66■□□□□ 0.26
SF1-204ENST00000377390 CARMIL1Q5VZK9 1371 aa16.65■□□□□ 0.26
SF1-204ENST00000377390 PPP4R2Q9NY27 417 aa16.63■□□□□ 0.25
SF1-204ENST00000377390 FOXD1Q16676 465 aa16.62■□□□□ 0.25
SF1-204ENST00000377390 NOP58Q9Y2X3 529 aaKnown RBP16.62■□□□□ 0.25
SF1-204ENST00000377390 KIF21BO75037 1637 aa16.62■□□□□ 0.25
SF1-204ENST00000377390 FANCIQ9NVI1 1328 aa16.62■□□□□ 0.25
SF1-204ENST00000377390 ANP32AP39687 249 aaKnown RBP16.61■□□□□ 0.25
SF1-204ENST00000377390 MRS2Q9HD23 443 aa16.61■□□□□ 0.25
SF1-204ENST00000377390 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
SF1-204ENST00000377390 PAK3O75914 559 aaPredicted RBP16.58■□□□□ 0.25
SF1-204ENST00000377390 FHOD3Q2V2M9 1422 aa16.58■□□□□ 0.24
SF1-204ENST00000377390 ZBTB47Q9UFB7 747 aaPredicted RBP16.58■□□□□ 0.24
SF1-204ENST00000377390 CHMP7Q8WUX9 453 aaPredicted RBP16.56■□□□□ 0.24
SF1-204ENST00000377390 SETD5Q9C0A6 1442 aa16.56■□□□□ 0.24
SF1-204ENST00000377390 LAS1LQ9Y4W2 734 aaKnown RBP16.54■□□□□ 0.24
SF1-204ENST00000377390 WDR97A6NE52 1622 aa16.51■□□□□ 0.23
SF1-204ENST00000377390 MTUS2Q5JR59 1369 aa16.51■□□□□ 0.23
SF1-204ENST00000377390 IGF1RP08069 1367 aa16.5■□□□□ 0.23
SF1-204ENST00000377390 CCDC184Q52MB2 194 aa16.49■□□□□ 0.23
SF1-204ENST00000377390 FGD5Q6ZNL6 1462 aa16.49■□□□□ 0.23
SF1-204ENST00000377390 FANCD2Q9BXW9 1451 aa16.49■□□□□ 0.23
SF1-204ENST00000377390 CUX1P39880 1505 aa16.49■□□□□ 0.23
SF1-204ENST00000377390 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
SF1-204ENST00000377390 ARAP1Q96P48 1450 aa16.46■□□□□ 0.23
SF1-204ENST00000377390 HSPA5P11021 654 aaKnown RBP16.45■□□□□ 0.22
SF1-204ENST00000377390 NCAPD3P42695 1498 aa16.45■□□□□ 0.22
SF1-204ENST00000377390 EIF4G2P78344 907 aaKnown RBP eCLIP16.43■□□□□ 0.221e-7■■□□□ 12.5
SF1-204ENST00000377390 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.43■□□□□ 0.224e-9■■■□□ 19.2
SF1-204ENST00000377390 RRBP1Q9P2E9 1410 aaKnown RBP16.43■□□□□ 0.22
SF1-204ENST00000377390 AQRO60306 1485 aaKnown RBP eCLIP16.42■□□□□ 0.221e-7■■■■■ 49.1
SF1-204ENST00000377390 NEFMP07197 916 aa16.42■□□□□ 0.22
SF1-204ENST00000377390 TIMELESSQ9UNS1 1208 aa16.4■□□□□ 0.22
SF1-204ENST00000377390 KDM2AQ9Y2K7 1162 aa16.39■□□□□ 0.21
SF1-204ENST00000377390 ERCC6Q03468 1493 aa16.39■□□□□ 0.21
SF1-204ENST00000377390 PDS5BQ9NTI5 1447 aa16.38■□□□□ 0.21
SF1-204ENST00000377390 DAXXQ9UER7 740 aaPredicted RBP16.38■□□□□ 0.21
SF1-204ENST00000377390 PHLDB1Q86UU1 1377 aa16.36■□□□□ 0.21
SF1-204ENST00000377390 IPO9Q96P70 1041 aaKnown RBP16.35■□□□□ 0.21
SF1-204ENST00000377390 ERICH6BQ5W0A0 696 aa16.35■□□□□ 0.21
SF1-204ENST00000377390 CFTRP13569 1480 aa16.35■□□□□ 0.21
SF1-204ENST00000377390 ZNF644Q9H582 1327 aaPredicted RBP16.34■□□□□ 0.21
SF1-204ENST00000377390 WASHC2AQ641Q2 1341 aa16.33■□□□□ 0.2
SF1-204ENST00000377390 MAPKBP1O60336 1514 aa16.32■□□□□ 0.2
SF1-204ENST00000377390 PRKRIP1Q9H875 184 aaPredicted RBP16.3■□□□□ 0.2
SF1-204ENST00000377390 RGL3Q3MIN7 710 aa16.29■□□□□ 0.2
SF1-204ENST00000377390 TMC1Q8TDI8 760 aa16.29■□□□□ 0.2
SF1-204ENST00000377390 PLPPR3Q6T4P5 718 aa16.29■□□□□ 0.2
SF1-204ENST00000377390 BRPF3Q9ULD4 1205 aa16.29■□□□□ 0.2
SF1-204ENST00000377390 ARHGAP35Q9NRY4 1499 aa16.28■□□□□ 0.2
SF1-204ENST00000377390 ARXQ96QS3 562 aa16.27■□□□□ 0.2
SF1-204ENST00000377390 TOP2BQ02880 1626 aa16.24■□□□□ 0.19
SF1-204ENST00000377390 L3MBTL2Q969R5 705 aa16.24■□□□□ 0.19
SF1-204ENST00000377390 SLC4A1APQ9BWU0 796 aaKnown RBP16.23■□□□□ 0.19
SF1-204ENST00000377390 POLA1P09884 1462 aaPredicted RBP16.22■□□□□ 0.19
SF1-204ENST00000377390 C11orf95C9JLR9 678 aaPredicted RBP16.22■□□□□ 0.19
SF1-204ENST00000377390 PRXQ9BXM0 1461 aa16.22■□□□□ 0.19
SF1-204ENST00000377390 AKNAQ7Z591 1439 aa16.21■□□□□ 0.19
SF1-204ENST00000377390 UBE2Q2Q8WVN8 375 aa16.21■□□□□ 0.19
SF1-204ENST00000377390 ZBED9Q6R2W3 1325 aa16.21■□□□□ 0.19
SF1-204ENST00000377390 CFDP1Q9UEE9 299 aaPredicted RBP16.21■□□□□ 0.18
SF1-204ENST00000377390 SLC4A3P48751 1232 aa16.2■□□□□ 0.18
SF1-204ENST00000377390 NUDCQ9Y266 331 aa16.17■□□□□ 0.18
SF1-204ENST00000377390 TOPBP1Q92547 1522 aa16.16■□□□□ 0.18
SF1-204ENST00000377390 LRRC9Q6ZRR7 1453 aa16.15■□□□□ 0.18
SF1-204ENST00000377390 GAPVD1Q14C86 1478 aa16.15■□□□□ 0.18
SF1-204ENST00000377390 EXOC6Q8TAG9 804 aa16.14■□□□□ 0.17
SF1-204ENST00000377390 HNRNPMP52272 730 aaKnown RBP eCLIP16.13■□□□□ 0.17
SF1-204ENST00000377390 SKAP1Q86WV1 359 aa16.13■□□□□ 0.17
SF1-204ENST00000377390 PEG3Q9GZU2 1588 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms