RNA–Protein interactions for RNA: ENST00000374429.6

CXCL12-203, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CXCL12, Length 3,532 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-203ENST00000374429 PEG3Q9GZU2 1588 aa15.68■□□□□ 0.1
CXCL12-203ENST00000374429 POLR3GLQ9BT43 218 aa15.65■□□□□ 0.1
CXCL12-203ENST00000374429 TOP2BQ02880 1626 aa15.64■□□□□ 0.09
CXCL12-203ENST00000374429 PRKCSHP14314 528 aaPredicted RBP15.64■□□□□ 0.09
CXCL12-203ENST00000374429 ACIN1Q9UKV3 1341 aaKnown RBP15.63■□□□□ 0.09
CXCL12-203ENST00000374429 BCL11AQ9H165 835 aa15.63■□□□□ 0.09
CXCL12-203ENST00000374429 DDX10Q13206 875 aaKnown RBP15.61■□□□□ 0.09
CXCL12-203ENST00000374429 AEBP2Q6ZN18 517 aaPredicted RBP15.61■□□□□ 0.09
CXCL12-203ENST00000374429 CCNB3Q8WWL7 1395 aa15.6■□□□□ 0.09
CXCL12-203ENST00000374429 PRXQ9BXM0 1461 aa15.6■□□□□ 0.09
CXCL12-203ENST00000374429 MTUS2Q5JR59 1369 aa15.59■□□□□ 0.09
CXCL12-203ENST00000374429 FOXD1Q16676 465 aa15.59■□□□□ 0.09
CXCL12-203ENST00000374429 ZNF326Q5BKZ1 582 aaKnown RBP15.58■□□□□ 0.08
CXCL12-203ENST00000374429 ARHGAP35Q9NRY4 1499 aa15.57■□□□□ 0.08
CXCL12-203ENST00000374429 SENP3-EIF4A1A0A087X0R7 540 aa15.56■□□□□ 0.08
CXCL12-203ENST00000374429 CHMP7Q8WUX9 453 aaPredicted RBP15.55■□□□□ 0.08
CXCL12-203ENST00000374429 KCNH8Q96L42 1107 aa15.54■□□□□ 0.08
CXCL12-203ENST00000374429 AQRO60306 1485 aaKnown RBP eCLIP15.54■□□□□ 0.08
CXCL12-203ENST00000374429 HMGXB3Q12766 1538 aa15.54■□□□□ 0.08
CXCL12-203ENST00000374429 RAB3GAP2Q9H2M9 1393 aa15.52■□□□□ 0.07
CXCL12-203ENST00000374429 PHLDB1Q86UU1 1377 aa15.51■□□□□ 0.07
CXCL12-203ENST00000374429 BCANQ96GW7 911 aa15.51■□□□□ 0.07
CXCL12-203ENST00000374429 DHX57Q6P158 1386 aaKnown RBP15.5■□□□□ 0.07
CXCL12-203ENST00000374429 POLA1P09884 1462 aaPredicted RBP15.49■□□□□ 0.07
CXCL12-203ENST00000374429 PDS5BQ9NTI5 1447 aa15.45■□□□□ 0.06
CXCL12-203ENST00000374429 TOPBP1Q92547 1522 aa15.44■□□□□ 0.06
CXCL12-203ENST00000374429 ERCC6Q03468 1493 aa15.42■□□□□ 0.06
CXCL12-203ENST00000374429 ZNF644Q9H582 1327 aaPredicted RBP15.41■□□□□ 0.06
CXCL12-203ENST00000374429 MYT1LQ9UL68 1186 aa15.4■□□□□ 0.06
CXCL12-203ENST00000374429 GAPVD1Q14C86 1478 aa15.38■□□□□ 0.05
CXCL12-203ENST00000374429 URB2Q14146 1524 aaKnown RBP15.37■□□□□ 0.05
CXCL12-203ENST00000374429 BIVM-ERCC5R4GMW8 1640 aa15.36■□□□□ 0.05
CXCL12-203ENST00000374429 SENP3Q9H4L4 574 aaPredicted RBP15.35■□□□□ 0.05
CXCL12-203ENST00000374429 TONSLQ96HA7 1378 aa15.34■□□□□ 0.05
CXCL12-203ENST00000374429 ERICH6Q7L0X2 663 aa15.34■□□□□ 0.05
CXCL12-203ENST00000374429 FHAD1B1AJZ9 1412 aa15.34■□□□□ 0.05
CXCL12-203ENST00000374429 ERICH3Q5RHP9 1530 aa15.34■□□□□ 0.05
CXCL12-203ENST00000374429 SETD5Q9C0A6 1442 aa15.33■□□□□ 0.04
CXCL12-203ENST00000374429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.32■□□□□ 0.04
CXCL12-203ENST00000374429 KDM2AQ9Y2K7 1162 aa15.32■□□□□ 0.04
CXCL12-203ENST00000374429 LRRC9Q6ZRR7 1453 aa15.3■□□□□ 0.04
CXCL12-203ENST00000374429 ZNF608Q9ULD9 1512 aaPredicted RBP15.28■□□□□ 0.04
CXCL12-203ENST00000374429 SLC4A1APQ9BWU0 796 aaKnown RBP15.28■□□□□ 0.04
CXCL12-203ENST00000374429 CFDP1Q9UEE9 299 aaPredicted RBP15.27■□□□□ 0.04
CXCL12-203ENST00000374429 IRX6P78412 446 aaPredicted RBP15.24■□□□□ 0.03
CXCL12-203ENST00000374429 JPH4Q96JJ6 628 aa15.23■□□□□ 0.03
CXCL12-203ENST00000374429 CDK11AQ9UQ88 783 aaPredicted RBP15.23■□□□□ 0.03
CXCL12-203ENST00000374429 ANP32CO43423 234 aa15.22■□□□□ 0.03
CXCL12-203ENST00000374429 DNMBPQ6XZF7 1577 aa15.22■□□□□ 0.03
CXCL12-203ENST00000374429 RRBP1Q9P2E9 1410 aaKnown RBP15.22■□□□□ 0.03
CXCL12-203ENST00000374429 RGL3Q3MIN7 710 aa15.22■□□□□ 0.03
CXCL12-203ENST00000374429 FMN1Q68DA7 1419 aa15.21■□□□□ 0.03
CXCL12-203ENST00000374429 PCF11O94913 1555 aaKnown RBP15.21■□□□□ 0.02
CXCL12-203ENST00000374429 ABCA10Q8WWZ4 1543 aa15.21■□□□□ 0.02
CXCL12-203ENST00000374429 PPP1R15AO75807 674 aaPredicted RBP15.19■□□□□ 0.02
CXCL12-203ENST00000374429 FAM9BQ8IZU0 186 aa15.18■□□□□ 0.02
CXCL12-203ENST00000374429 PLEKHD1A6NEE1 506 aa15.18■□□□□ 0.02
CXCL12-203ENST00000374429 HNRNPMP52272 730 aaKnown RBP eCLIP15.18■□□□□ 0.02
CXCL12-203ENST00000374429 TIAM1Q13009 1591 aa15.17■□□□□ 0.02
CXCL12-203ENST00000374429 MPHOSPH9Q99550 1183 aa15.16■□□□□ 0.02
CXCL12-203ENST00000374429 CDK13Q14004 1512 aaKnown RBP15.16■□□□□ 0.02
CXCL12-203ENST00000374429 SALL2Q9Y467 1007 aaPredicted RBP15.15■□□□□ 0.02
CXCL12-203ENST00000374429 FGD6Q6ZV73 1430 aa15.15■□□□□ 0.02
CXCL12-203ENST00000374429 L3MBTL2Q969R5 705 aa15.15■□□□□ 0.02
CXCL12-203ENST00000374429 PTPRKQ15262 1439 aa15.15■□□□□ 0.02
CXCL12-203ENST00000374429 FKBP8Q14318 412 aa15.14■□□□□ 0.01
CXCL12-203ENST00000374429 CASKIN1Q8WXD9 1431 aa15.12■□□□□ 0.01
CXCL12-203ENST00000374429 HNRNPUQ00839 825 aaKnown RBP eCLIP15.12■□□□□ 0.01
CXCL12-203ENST00000374429 NCOA2Q15596 1464 aa15.12■□□□□ 0.01
CXCL12-203ENST00000374429 CLSPNQ9HAW4 1339 aa15.11■□□□□ 0.01
CXCL12-203ENST00000374429 HSPA5P11021 654 aaKnown RBP15.11■□□□□ 0.01
CXCL12-203ENST00000374429 TSPY4P0CV99 314 aa15.1■□□□□ 0.01
CXCL12-203ENST00000374429 TSPY10P0CW01 314 aa15.1■□□□□ 0.01
CXCL12-203ENST00000374429 KIF21AQ7Z4S6 1674 aa15.09■□□□□ 0.01
CXCL12-203ENST00000374429 PKD2Q13563 968 aa15.08■□□□□ 0
CXCL12-203ENST00000374429 SNAPC4Q5SXM2 1469 aa15.08■□□□□ 0
CXCL12-203ENST00000374429 PRG4Q92954 1404 aaPredicted RBP15.07■□□□□ 0
CXCL12-203ENST00000374429 CCDC18Q5T9S5 1454 aa15.07■□□□□ 0
CXCL12-203ENST00000374429 WDR97A6NE52 1622 aa15.06■□□□□ 0
CXCL12-203ENST00000374429 PRDM2Q13029 1718 aa15.06■□□□□ 0
CXCL12-203ENST00000374429 LAMC3Q9Y6N6 1575 aa15.06■□□□□ 0
CXCL12-203ENST00000374429 NEFLP07196 543 aa15.05■□□□□ 0
CXCL12-203ENST00000374429 EIF4G2P78344 907 aaKnown RBP eCLIP15.04■□□□□ -0
CXCL12-203ENST00000374429 MYOM3Q5VTT5 1437 aa15.04■□□□□ -0
CXCL12-203ENST00000374429 MRC2Q9UBG0 1479 aa15.04■□□□□ -0
CXCL12-203ENST00000374429 GRIN2BQ13224 1484 aa15.02■□□□□ -0
CXCL12-203ENST00000374429 PLB1Q6P1J6 1458 aa15.02■□□□□ -0
CXCL12-203ENST00000374429 FYCO1Q9BQS8 1478 aa15.02■□□□□ -0
CXCL12-203ENST00000374429 DCAF11Q8TEB1 546 aa15□□□□□ -0.01
CXCL12-203ENST00000374429 ANP32EQ9BTT0 268 aa15□□□□□ -0.01
CXCL12-203ENST00000374429 MAPKBP1O60336 1514 aa14.99□□□□□ -0.01
CXCL12-203ENST00000374429 SUPT16HQ9Y5B9 1047 aaKnown RBP14.99□□□□□ -0.01
CXCL12-203ENST00000374429 CCDC184Q52MB2 194 aa14.99□□□□□ -0.01
CXCL12-203ENST00000374429 NBPF8Q3BBV2 869 aa14.98□□□□□ -0.01
CXCL12-203ENST00000374429 MRS2Q9HD23 443 aa14.98□□□□□ -0.01
CXCL12-203ENST00000374429 C11orf95C9JLR9 678 aaPredicted RBP14.97□□□□□ -0.01
CXCL12-203ENST00000374429 CHGAP10645 457 aaKnown RBP14.97□□□□□ -0.01
CXCL12-203ENST00000374429 NAIPQ13075 1403 aa14.97□□□□□ -0.01
CXCL12-203ENST00000374429 NUP155O75694 1391 aa14.95□□□□□ -0.02
CXCL12-203ENST00000374429 EPRSP07814 1512 aaKnown RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms