RNA–Protein interactions for RNA: ENST00000374429.6

CXCL12-203, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CXCL12, Length 3,532 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-203ENST00000374429 NISCHQ9Y2I1 1504 aa21.63■■□□□ 1.05
CXCL12-203ENST00000374429 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
CXCL12-203ENST00000374429 SHROOM4Q9ULL8 1493 aa19.7■□□□□ 0.74
CXCL12-203ENST00000374429 SUPT5HO00267 1087 aaKnown RBP19.33■□□□□ 0.68
CXCL12-203ENST00000374429 EHMT2Q96KQ7 1210 aa18.45■□□□□ 0.54
CXCL12-203ENST00000374429 FAM9AQ8IZU1 332 aaPredicted RBP18.1■□□□□ 0.49
CXCL12-203ENST00000374429 ZCCHC6Q5VYS8 1495 aaKnown RBP18.09■□□□□ 0.49
CXCL12-203ENST00000374429 ABCC9O60706 1549 aa18.09■□□□□ 0.49
CXCL12-203ENST00000374429 CHIC1Q5VXU3 224 aa18.01■□□□□ 0.47
CXCL12-203ENST00000374429 LOC105371045A0A1W2PR82 267 aa17.98■□□□□ 0.47
CXCL12-203ENST00000374429 CCDC180Q9P1Z9 1646 aa17.85■□□□□ 0.45
CXCL12-203ENST00000374429 PCGF6Q9BYE7 350 aa17.82■□□□□ 0.44
CXCL12-203ENST00000374429 PABPN1Q86U42 306 aaKnown RBP eCLIP17.72■□□□□ 0.43
CXCL12-203ENST00000374429 PPARGC1BQ86YN6 1023 aaKnown RBP17.68■□□□□ 0.42
CXCL12-203ENST00000374429 SCRIBQ14160 1630 aa17.68■□□□□ 0.42
CXCL12-203ENST00000374429 TTBK1Q5TCY1 1321 aaPredicted RBP17.67■□□□□ 0.42
CXCL12-203ENST00000374429 TRIM41Q8WV44 630 aa17.67■□□□□ 0.42
CXCL12-203ENST00000374429 MYO15BQ96JP2 1530 aa17.66■□□□□ 0.42
CXCL12-203ENST00000374429 RANGAP1P46060 587 aaPredicted RBP17.45■□□□□ 0.38
CXCL12-203ENST00000374429 CECR2Q9BXF3 1484 aa17.32■□□□□ 0.36
CXCL12-203ENST00000374429 RSF1Q96T23 1441 aaPredicted RBP17.3■□□□□ 0.36
CXCL12-203ENST00000374429 PELP1Q8IZL8 1130 aaKnown RBP17.15■□□□□ 0.34
CXCL12-203ENST00000374429 DCAF1Q9Y4B6 1507 aa17.13■□□□□ 0.33
CXCL12-203ENST00000374429 UBTFP17480 764 aaKnown RBP17.09■□□□□ 0.33
CXCL12-203ENST00000374429 HRCP23327 699 aa17.08■□□□□ 0.32
CXCL12-203ENST00000374429 RB1CC1Q8TDY2 1594 aa17.05■□□□□ 0.32
CXCL12-203ENST00000374429 MROH2BQ7Z745 1585 aa17.04■□□□□ 0.32
CXCL12-203ENST00000374429 TRIM26Q12899 539 aaPredicted RBP16.97■□□□□ 0.31
CXCL12-203ENST00000374429 NACADO15069 1562 aa16.9■□□□□ 0.3
CXCL12-203ENST00000374429 WIZO95785 1651 aa16.9■□□□□ 0.3
CXCL12-203ENST00000374429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.87■□□□□ 0.29
CXCL12-203ENST00000374429 CCER1Q8TC90 406 aaPredicted RBP16.77■□□□□ 0.28
CXCL12-203ENST00000374429 MYT1Q01538 1121 aa16.75■□□□□ 0.27
CXCL12-203ENST00000374429 ABCC8Q09428 1581 aa16.74■□□□□ 0.27
CXCL12-203ENST00000374429 HNRNPUL2Q1KMD3 747 aaKnown RBP16.7■□□□□ 0.26
CXCL12-203ENST00000374429 ATP1B4Q9UN42 357 aaPredicted RBP16.69■□□□□ 0.26
CXCL12-203ENST00000374429 CSRNP3Q8WYN3 585 aa16.65■□□□□ 0.26
CXCL12-203ENST00000374429 SOGA1O94964 1423 aa16.65■□□□□ 0.26
CXCL12-203ENST00000374429 CCDC88BA6NC98 1476 aa16.64■□□□□ 0.25
CXCL12-203ENST00000374429 APLP2Q06481 763 aa16.62■□□□□ 0.25
CXCL12-203ENST00000374429 ITGAEP38570 1179 aa16.6■□□□□ 0.25
CXCL12-203ENST00000374429 BAZ1AQ9NRL2 1556 aaPredicted RBP16.59■□□□□ 0.25
CXCL12-203ENST00000374429 RUSC2Q8N2Y8 1516 aa16.56■□□□□ 0.24
CXCL12-203ENST00000374429 P3H3Q8IVL6 736 aa16.49■□□□□ 0.23
CXCL12-203ENST00000374429 SMARCA4P51532 1647 aa16.43■□□□□ 0.22
CXCL12-203ENST00000374429 BAZ1BQ9UIG0 1483 aaKnown RBP16.4■□□□□ 0.22
CXCL12-203ENST00000374429 WRNQ14191 1432 aaPredicted RBP eCLIP16.39■□□□□ 0.21
CXCL12-203ENST00000374429 CEP162Q5TB80 1403 aa16.35■□□□□ 0.21
CXCL12-203ENST00000374429 TOP2AP11388 1531 aaKnown RBP16.34■□□□□ 0.21
CXCL12-203ENST00000374429 YTHDC1Q96MU7 727 aaKnown RBP16.33■□□□□ 0.21
CXCL12-203ENST00000374429 ARID3CA6NKF2 412 aa16.32■□□□□ 0.2
CXCL12-203ENST00000374429 ZEB1P37275 1124 aaPredicted RBP16.32■□□□□ 0.2
CXCL12-203ENST00000374429 SMARCA2P51531 1590 aa16.32■□□□□ 0.2
CXCL12-203ENST00000374429 BICRAQ9NZM4 1560 aa16.29■□□□□ 0.2
CXCL12-203ENST00000374429 UNC13AQ9UPW8 1703 aa16.29■□□□□ 0.2
CXCL12-203ENST00000374429 ATAD2BQ9ULI0 1458 aa16.29■□□□□ 0.2
CXCL12-203ENST00000374429 DNAJC5BQ9UF47 199 aa16.28■□□□□ 0.2
CXCL12-203ENST00000374429 CLIP1P30622 1438 aa16.17■□□□□ 0.18
CXCL12-203ENST00000374429 FAM50AQ14320 339 aaKnown RBP16.13■□□□□ 0.17
CXCL12-203ENST00000374429 TNIKQ9UKE5 1360 aa16.13■□□□□ 0.17
CXCL12-203ENST00000374429 KANK4Q5T7N3 995 aaPredicted RBP16.12■□□□□ 0.17
CXCL12-203ENST00000374429 RAPGEF2Q9Y4G8 1499 aa16.12■□□□□ 0.17
CXCL12-203ENST00000374429 DIEXFQ68CQ4 756 aaKnown RBP16.11■□□□□ 0.17
CXCL12-203ENST00000374429 GOLGA3Q08378 1498 aa16.09■□□□□ 0.17
CXCL12-203ENST00000374429 SYNJ1O43426 1573 aa16.06■□□□□ 0.16
CXCL12-203ENST00000374429 NEUROD1Q13562 356 aa16.03■□□□□ 0.16
CXCL12-203ENST00000374429 FBLN2P98095 1184 aa16.03■□□□□ 0.16
CXCL12-203ENST00000374429 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
CXCL12-203ENST00000374429 EIF4G1Q04637 1599 aaKnown RBP15.98■□□□□ 0.15
CXCL12-203ENST00000374429 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
CXCL12-203ENST00000374429 CUX2O14529 1486 aa15.95■□□□□ 0.14
CXCL12-203ENST00000374429 HIRIP3Q9BW71 556 aaPredicted RBP15.95■□□□□ 0.14
CXCL12-203ENST00000374429 EEA1Q15075 1411 aa15.92■□□□□ 0.14
CXCL12-203ENST00000374429 CNGB1Q14028 1251 aaPredicted RBP15.91■□□□□ 0.14
CXCL12-203ENST00000374429 NESP48681 1621 aa15.91■□□□□ 0.14
CXCL12-203ENST00000374429 TDRD9Q8NDG6 1382 aaKnown RBP15.91■□□□□ 0.14
CXCL12-203ENST00000374429 KIF27Q86VH2 1401 aa15.89■□□□□ 0.13
CXCL12-203ENST00000374429 ZNF316A6NFI3 1004 aaPredicted RBP15.85■□□□□ 0.13
CXCL12-203ENST00000374429 CHIC2Q9UKJ5 165 aa15.85■□□□□ 0.13
CXCL12-203ENST00000374429 CADPSQ9ULU8 1353 aa15.85■□□□□ 0.13
CXCL12-203ENST00000374429 RAD54L2Q9Y4B4 1467 aa15.83■□□□□ 0.13
CXCL12-203ENST00000374429 CARMIL1Q5VZK9 1371 aa15.83■□□□□ 0.12
CXCL12-203ENST00000374429 NCAPD3P42695 1498 aa15.82■□□□□ 0.12
CXCL12-203ENST00000374429 VPS8Q8N3P4 1428 aa15.82■□□□□ 0.12
CXCL12-203ENST00000374429 MIER1Q8N108 512 aa15.82■□□□□ 0.12
CXCL12-203ENST00000374429 CUX1P39880 1505 aa15.79■□□□□ 0.12
CXCL12-203ENST00000374429 SIN3AQ96ST3 1273 aa15.78■□□□□ 0.12
CXCL12-203ENST00000374429 IGF1RP08069 1367 aa15.76■□□□□ 0.11
CXCL12-203ENST00000374429 GTF3C3Q9Y5Q9 886 aa15.76■□□□□ 0.11
CXCL12-203ENST00000374429 CC2D2AQ9P2K1 1620 aa15.72■□□□□ 0.11
CXCL12-203ENST00000374429 CENPBP07199 599 aaPredicted RBP15.72■□□□□ 0.11
CXCL12-203ENST00000374429 TRIM52Q96A61 297 aa15.72■□□□□ 0.11
CXCL12-203ENST00000374429 FGD5Q6ZNL6 1462 aa15.71■□□□□ 0.11
CXCL12-203ENST00000374429 ARAP1Q96P48 1450 aa15.71■□□□□ 0.11
CXCL12-203ENST00000374429 FANCD2Q9BXW9 1451 aa15.71■□□□□ 0.11
CXCL12-203ENST00000374429 CFTRP13569 1480 aa15.7■□□□□ 0.1
CXCL12-203ENST00000374429 KIF21BO75037 1637 aa15.7■□□□□ 0.1
CXCL12-203ENST00000374429 FHOD3Q2V2M9 1422 aa15.7■□□□□ 0.1
CXCL12-203ENST00000374429 RRP7BPQ9NSQ0 103 aa15.69■□□□□ 0.1
CXCL12-203ENST00000374429 ZNF777Q9ULD5 760 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms