RNA–Protein interactions for RNA: ENST00000371123.5

SMARCA1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,948 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-203ENST00000371123 MAPKBP1O60336 1514 aa12.44□□□□□ -0.42
SMARCA1-203ENST00000371123 PAK3O75914 559 aaPredicted RBP12.43□□□□□ -0.42
SMARCA1-203ENST00000371123 IRX6P78412 446 aaPredicted RBP12.42□□□□□ -0.42
SMARCA1-203ENST00000371123 GOLGA3Q08378 1498 aa12.42□□□□□ -0.42
SMARCA1-203ENST00000371123 ARID3CA6NKF2 412 aa12.41□□□□□ -0.42
SMARCA1-203ENST00000371123 WDR97A6NE52 1622 aa12.41□□□□□ -0.42
SMARCA1-203ENST00000371123 PPP1R15AO75807 674 aaPredicted RBP12.41□□□□□ -0.42
SMARCA1-203ENST00000371123 BIVM-ERCC5R4GMW8 1640 aa12.4□□□□□ -0.42
SMARCA1-203ENST00000371123 VPS8Q8N3P4 1428 aa12.4□□□□□ -0.42
SMARCA1-203ENST00000371123 IL27Q8NEV9 243 aa12.4□□□□□ -0.43
SMARCA1-203ENST00000371123 NESP48681 1621 aa12.39□□□□□ -0.43
SMARCA1-203ENST00000371123 KIF21BO75037 1637 aa12.39□□□□□ -0.43
SMARCA1-203ENST00000371123 DDX10Q13206 875 aaKnown RBP12.39□□□□□ -0.43
SMARCA1-203ENST00000371123 FAM50AQ14320 339 aaKnown RBP12.37□□□□□ -0.43
SMARCA1-203ENST00000371123 KANK4Q5T7N3 995 aaPredicted RBP12.37□□□□□ -0.43
SMARCA1-203ENST00000371123 ERICH6Q7L0X2 663 aa12.36□□□□□ -0.43
SMARCA1-203ENST00000371123 PDS5BQ9NTI5 1447 aa12.35□□□□□ -0.43
SMARCA1-203ENST00000371123 CUX2O14529 1486 aa12.34□□□□□ -0.43
SMARCA1-203ENST00000371123 DNMBPQ6XZF7 1577 aa12.34□□□□□ -0.43
SMARCA1-203ENST00000371123 NEFLP07196 543 aa12.33□□□□□ -0.44
SMARCA1-203ENST00000371123 FANCD2Q9BXW9 1451 aa12.33□□□□□ -0.44
SMARCA1-203ENST00000371123 MRC2Q9UBG0 1479 aa12.32□□□□□ -0.44
SMARCA1-203ENST00000371123 RAPGEF2Q9Y4G8 1499 aa12.32□□□□□ -0.44
SMARCA1-203ENST00000371123 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.31□□□□□ -0.44
SMARCA1-203ENST00000371123 NBR1Q14596 966 aa12.31□□□□□ -0.44
SMARCA1-203ENST00000371123 TOP2BQ02880 1626 aa12.3□□□□□ -0.44
SMARCA1-203ENST00000371123 URB2Q14146 1524 aaKnown RBP12.29□□□□□ -0.44
SMARCA1-203ENST00000371123 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
SMARCA1-203ENST00000371123 SYNJ1O43426 1573 aa12.29□□□□□ -0.44
SMARCA1-203ENST00000371123 EEA1Q15075 1411 aa12.28□□□□□ -0.44
SMARCA1-203ENST00000371123 RTN4Q9NQC3 1192 aaKnown RBP12.28□□□□□ -0.44
SMARCA1-203ENST00000371123 TARBP1Q13395 1621 aaKnown RBP12.27□□□□□ -0.44
SMARCA1-203ENST00000371123 RRBP1Q9P2E9 1410 aaKnown RBP12.27□□□□□ -0.45
SMARCA1-203ENST00000371123 ARAP1Q96P48 1450 aa12.26□□□□□ -0.45
SMARCA1-203ENST00000371123 SIN3AQ96ST3 1273 aa12.26□□□□□ -0.45
SMARCA1-203ENST00000371123 CUX1P39880 1505 aa12.25□□□□□ -0.45
SMARCA1-203ENST00000371123 TOPBP1Q92547 1522 aa12.24□□□□□ -0.45
SMARCA1-203ENST00000371123 UBE2Q2Q8WVN8 375 aa12.23□□□□□ -0.45
SMARCA1-203ENST00000371123 CCDC184Q52MB2 194 aa12.21□□□□□ -0.45
SMARCA1-203ENST00000371123 RAB3GAP2Q9H2M9 1393 aa12.21□□□□□ -0.46
SMARCA1-203ENST00000371123 CCER2I3L3R5 266 aa12.19□□□□□ -0.46
SMARCA1-203ENST00000371123 B4GALNT3Q6L9W6 998 aa12.19□□□□□ -0.46
SMARCA1-203ENST00000371123 CDK11AQ9UQ88 783 aaPredicted RBP12.19□□□□□ -0.46
SMARCA1-203ENST00000371123 ZNF326Q5BKZ1 582 aaKnown RBP12.19□□□□□ -0.46
SMARCA1-203ENST00000371123 NOP58Q9Y2X3 529 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-203ENST00000371123 ABCA5Q8WWZ7 1642 aa12.18□□□□□ -0.46
SMARCA1-203ENST00000371123 ERICH6BQ5W0A0 696 aa12.14□□□□□ -0.47
SMARCA1-203ENST00000371123 WASHC2AQ641Q2 1341 aa12.13□□□□□ -0.47
SMARCA1-203ENST00000371123 ABCA10Q8WWZ4 1543 aa12.12□□□□□ -0.47
SMARCA1-203ENST00000371123 IFT140Q96RY7 1462 aa12.12□□□□□ -0.47
SMARCA1-203ENST00000371123 KDM5BQ9UGL1 1544 aa12.12□□□□□ -0.47
SMARCA1-203ENST00000371123 MYT1LQ9UL68 1186 aa12.12□□□□□ -0.47
SMARCA1-203ENST00000371123 POLA1P09884 1462 aaPredicted RBP12.12□□□□□ -0.47
SMARCA1-203ENST00000371123 ERCC6Q03468 1493 aa12.11□□□□□ -0.47
SMARCA1-203ENST00000371123 CCNB3Q8WWL7 1395 aa12.11□□□□□ -0.47
SMARCA1-203ENST00000371123 HNRNPUQ00839 825 aaKnown RBP eCLIP12.1□□□□□ -0.47
SMARCA1-203ENST00000371123 PPP4R2Q9NY27 417 aa12.09□□□□□ -0.47
SMARCA1-203ENST00000371123 PBRM1Q86U86 1689 aa12.08□□□□□ -0.48
SMARCA1-203ENST00000371123 FGD5Q6ZNL6 1462 aa12.07□□□□□ -0.48
SMARCA1-203ENST00000371123 EIF4G3O43432 1585 aaKnown RBP12.06□□□□□ -0.48
SMARCA1-203ENST00000371123 ANP32CO43423 234 aa12.06□□□□□ -0.48
SMARCA1-203ENST00000371123 CHIC2Q9UKJ5 165 aa12.06□□□□□ -0.48
SMARCA1-203ENST00000371123 BRPF3Q9ULD4 1205 aa12.05□□□□□ -0.48
SMARCA1-203ENST00000371123 WASHC2CQ9Y4E1 1318 aa12.03□□□□□ -0.48
SMARCA1-203ENST00000371123 IPO9Q96P70 1041 aaKnown RBP12.03□□□□□ -0.48
SMARCA1-203ENST00000371123 FAM9BQ8IZU0 186 aa12.03□□□□□ -0.48
SMARCA1-203ENST00000371123 ERICH3Q5RHP9 1530 aa12.02□□□□□ -0.49
SMARCA1-203ENST00000371123 AKNAQ7Z591 1439 aa12.01□□□□□ -0.49
SMARCA1-203ENST00000371123 SETD5Q9C0A6 1442 aa12.01□□□□□ -0.49
SMARCA1-203ENST00000371123 PRXQ9BXM0 1461 aa12□□□□□ -0.49
SMARCA1-203ENST00000371123 PHLDB1Q86UU1 1377 aa12□□□□□ -0.49
SMARCA1-203ENST00000371123 ARHGAP35Q9NRY4 1499 aa12□□□□□ -0.49
SMARCA1-203ENST00000371123 C11orf95C9JLR9 678 aaPredicted RBP11.99□□□□□ -0.49
SMARCA1-203ENST00000371123 NPM2Q86SE8 214 aaKnown RBP11.98□□□□□ -0.49
SMARCA1-203ENST00000371123 CUL7Q14999 1698 aa11.98□□□□□ -0.49
SMARCA1-203ENST00000371123 ADAMTS12P58397 1594 aa11.96□□□□□ -0.49
SMARCA1-203ENST00000371123 LAS1LQ9Y4W2 734 aaKnown RBP11.96□□□□□ -0.49
SMARCA1-203ENST00000371123 SENP3Q9H4L4 574 aaPredicted RBP11.94□□□□□ -0.5
SMARCA1-203ENST00000371123 AQRO60306 1485 aaKnown RBP eCLIP11.94□□□□□ -0.53e-12■□□□□ 9.6
SMARCA1-203ENST00000371123 MAGI1Q96QZ7 1491 aaPredicted RBP11.93□□□□□ -0.5
SMARCA1-203ENST00000371123 ZNF608Q9ULD9 1512 aaPredicted RBP11.92□□□□□ -0.5
SMARCA1-203ENST00000371123 TIMELESSQ9UNS1 1208 aa11.92□□□□□ -0.5
SMARCA1-203ENST00000371123 TIAM1Q13009 1591 aa11.92□□□□□ -0.5
SMARCA1-203ENST00000371123 RNF123Q5XPI4 1314 aa11.92□□□□□ -0.5
SMARCA1-203ENST00000371123 NCOA2Q15596 1464 aa11.91□□□□□ -0.5
SMARCA1-203ENST00000371123 SKAP1Q86WV1 359 aa11.91□□□□□ -0.5
SMARCA1-203ENST00000371123 RAD54L2Q9Y4B4 1467 aa11.91□□□□□ -0.5
SMARCA1-203ENST00000371123 DENND4BO75064 1496 aaPredicted RBP11.9□□□□□ -0.5
SMARCA1-203ENST00000371123 FBLN2P98095 1184 aa11.89□□□□□ -0.51
SMARCA1-203ENST00000371123 ZBTB47Q9UFB7 747 aaPredicted RBP11.89□□□□□ -0.51
SMARCA1-203ENST00000371123 ZNF777Q9ULD5 760 aaPredicted RBP11.89□□□□□ -0.51
SMARCA1-203ENST00000371123 SHROOM2Q13796 1616 aa11.89□□□□□ -0.51
SMARCA1-203ENST00000371123 DCAF11Q8TEB1 546 aa11.89□□□□□ -0.51
SMARCA1-203ENST00000371123 CHD1O14646 1710 aa11.89□□□□□ -0.51
SMARCA1-203ENST00000371123 NEFMP07197 916 aa11.89□□□□□ -0.51
SMARCA1-203ENST00000371123 GRIN2BQ13224 1484 aa11.88□□□□□ -0.51
SMARCA1-203ENST00000371123 RRP7BPQ9NSQ0 103 aa11.88□□□□□ -0.51
SMARCA1-203ENST00000371123 CLASP1Q7Z460 1538 aa11.88□□□□□ -0.51
SMARCA1-203ENST00000371123 PTPRKQ15262 1439 aa11.88□□□□□ -0.51
SMARCA1-203ENST00000371123 ZBED9Q6R2W3 1325 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms