RNA–Protein interactions for RNA: ENST00000371123.5

SMARCA1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,948 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-203ENST00000371123 NISCHQ9Y2I1 1504 aa17.03■□□□□ 0.32
SMARCA1-203ENST00000371123 CCDC180Q9P1Z9 1646 aa15.35■□□□□ 0.05
SMARCA1-203ENST00000371123 HRCP23327 699 aa15.11■□□□□ 0.01
SMARCA1-203ENST00000371123 PPARGC1BQ86YN6 1023 aaKnown RBP15.04■□□□□ -0
SMARCA1-203ENST00000371123 DCAF8L2P0C7V8 631 aa15.03■□□□□ -0
SMARCA1-203ENST00000371123 SUPT5HO00267 1087 aaKnown RBP14.88□□□□□ -0.03
SMARCA1-203ENST00000371123 MYO15BQ96JP2 1530 aa14.85□□□□□ -0.03
SMARCA1-203ENST00000371123 SHROOM4Q9ULL8 1493 aa14.85□□□□□ -0.03
SMARCA1-203ENST00000371123 PCGF6Q9BYE7 350 aa14.68□□□□□ -0.06
SMARCA1-203ENST00000371123 EHMT2Q96KQ7 1210 aa14.62□□□□□ -0.07
SMARCA1-203ENST00000371123 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
SMARCA1-203ENST00000371123 PELP1Q8IZL8 1130 aaKnown RBP14.5□□□□□ -0.09
SMARCA1-203ENST00000371123 DCAF1Q9Y4B6 1507 aa14.4□□□□□ -0.1
SMARCA1-203ENST00000371123 CHIC1Q5VXU3 224 aa14.38□□□□□ -0.11
SMARCA1-203ENST00000371123 ZCCHC6Q5VYS8 1495 aaKnown RBP14.31□□□□□ -0.12
SMARCA1-203ENST00000371123 NACADO15069 1562 aa14.2□□□□□ -0.14
SMARCA1-203ENST00000371123 LOC105371045A0A1W2PR82 267 aa14.18□□□□□ -0.14
SMARCA1-203ENST00000371123 ABCC9O60706 1549 aa14.14□□□□□ -0.15
SMARCA1-203ENST00000371123 FAM9AQ8IZU1 332 aaPredicted RBP14.07□□□□□ -0.16
SMARCA1-203ENST00000371123 RB1CC1Q8TDY2 1594 aa14.07□□□□□ -0.16
SMARCA1-203ENST00000371123 TTBK1Q5TCY1 1321 aaPredicted RBP14.06□□□□□ -0.16
SMARCA1-203ENST00000371123 NEUROD1Q13562 356 aa14.05□□□□□ -0.16
SMARCA1-203ENST00000371123 TRIM26Q12899 539 aaPredicted RBP14.01□□□□□ -0.17
SMARCA1-203ENST00000371123 UNC13AQ9UPW8 1703 aa13.98□□□□□ -0.17
SMARCA1-203ENST00000371123 ACIN1Q9UKV3 1341 aaKnown RBP13.95□□□□□ -0.18
SMARCA1-203ENST00000371123 GTF3C3Q9Y5Q9 886 aa13.88□□□□□ -0.19
SMARCA1-203ENST00000371123 MYT1Q01538 1121 aa13.83□□□□□ -0.2
SMARCA1-203ENST00000371123 BICRAQ9NZM4 1560 aa13.77□□□□□ -0.2
SMARCA1-203ENST00000371123 ZEB1P37275 1124 aaPredicted RBP13.74□□□□□ -0.21
SMARCA1-203ENST00000371123 RANGAP1P46060 587 aaPredicted RBP13.59□□□□□ -0.23
SMARCA1-203ENST00000371123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.56□□□□□ -0.24
SMARCA1-203ENST00000371123 SCRIBQ14160 1630 aa13.54□□□□□ -0.24
SMARCA1-203ENST00000371123 DIEXFQ68CQ4 756 aaKnown RBP13.53□□□□□ -0.24
SMARCA1-203ENST00000371123 BCL11AQ9H165 835 aa13.46□□□□□ -0.26
SMARCA1-203ENST00000371123 TRIM41Q8WV44 630 aa13.45□□□□□ -0.26
SMARCA1-203ENST00000371123 YTHDC1Q96MU7 727 aaKnown RBP13.43□□□□□ -0.26
SMARCA1-203ENST00000371123 CENPBP07199 599 aaPredicted RBP13.41□□□□□ -0.26
SMARCA1-203ENST00000371123 PEG3Q9GZU2 1588 aa13.32□□□□□ -0.28
SMARCA1-203ENST00000371123 MIER1Q8N108 512 aa13.32□□□□□ -0.28
SMARCA1-203ENST00000371123 CCER1Q8TC90 406 aaPredicted RBP13.32□□□□□ -0.28
SMARCA1-203ENST00000371123 CSRNP3Q8WYN3 585 aa13.26□□□□□ -0.29
SMARCA1-203ENST00000371123 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
SMARCA1-203ENST00000371123 TSHZ2Q9NRE2 1034 aa13.24□□□□□ -0.29
SMARCA1-203ENST00000371123 ANP32EQ9BTT0 268 aa13.22□□□□□ -0.29
SMARCA1-203ENST00000371123 SMARCA4P51532 1647 aa13.21□□□□□ -0.3
SMARCA1-203ENST00000371123 ZNF316A6NFI3 1004 aaPredicted RBP13.19□□□□□ -0.3
SMARCA1-203ENST00000371123 SUPT16HQ9Y5B9 1047 aaKnown RBP13.19□□□□□ -0.3
SMARCA1-203ENST00000371123 BAZ1AQ9NRL2 1556 aaPredicted RBP13.17□□□□□ -0.3
SMARCA1-203ENST00000371123 PRKCSHP14314 528 aaPredicted RBP13.15□□□□□ -0.3
SMARCA1-203ENST00000371123 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
SMARCA1-203ENST00000371123 CC2D2AQ9P2K1 1620 aa13.1□□□□□ -0.31
SMARCA1-203ENST00000371123 RSF1Q96T23 1441 aaPredicted RBP13.1□□□□□ -0.31
SMARCA1-203ENST00000371123 SMARCA2P51531 1590 aa13.08□□□□□ -0.32
SMARCA1-203ENST00000371123 UBTFP17480 764 aaKnown RBP13.07□□□□□ -0.32
SMARCA1-203ENST00000371123 CECR2Q9BXF3 1484 aa13.06□□□□□ -0.32
SMARCA1-203ENST00000371123 NCAPD3P42695 1498 aa13.04□□□□□ -0.32
SMARCA1-203ENST00000371123 HNRNPUL2Q1KMD3 747 aaKnown RBP13.04□□□□□ -0.32
SMARCA1-203ENST00000371123 MROH2BQ7Z745 1585 aa13.02□□□□□ -0.32
SMARCA1-203ENST00000371123 PABPN1Q86U42 306 aaKnown RBP eCLIP13.02□□□□□ -0.33
SMARCA1-203ENST00000371123 ATAD2BQ9ULI0 1458 aa12.98□□□□□ -0.33
SMARCA1-203ENST00000371123 ITGAEP38570 1179 aa12.97□□□□□ -0.33
SMARCA1-203ENST00000371123 MSH5O43196 834 aa12.95□□□□□ -0.34
SMARCA1-203ENST00000371123 WRNQ14191 1432 aaPredicted RBP eCLIP12.94□□□□□ -0.34
SMARCA1-203ENST00000371123 KCNH8Q96L42 1107 aa12.93□□□□□ -0.34
SMARCA1-203ENST00000371123 ATP1B4Q9UN42 357 aaPredicted RBP12.93□□□□□ -0.34
SMARCA1-203ENST00000371123 WIZO95785 1651 aa12.91□□□□□ -0.34
SMARCA1-203ENST00000371123 APLP2Q06481 763 aa12.91□□□□□ -0.34
SMARCA1-203ENST00000371123 TOP2AP11388 1531 aaKnown RBP12.9□□□□□ -0.34
SMARCA1-203ENST00000371123 CNGB1Q14028 1251 aaPredicted RBP12.87□□□□□ -0.35
SMARCA1-203ENST00000371123 PRDM2Q13029 1718 aa12.85□□□□□ -0.35
SMARCA1-203ENST00000371123 BCANQ96GW7 911 aa12.83□□□□□ -0.36
SMARCA1-203ENST00000371123 CEP162Q5TB80 1403 aa12.83□□□□□ -0.36
SMARCA1-203ENST00000371123 RBM19Q9Y4C8 960 aaKnown RBP12.82□□□□□ -0.36
SMARCA1-203ENST00000371123 ABCC8Q09428 1581 aa12.8□□□□□ -0.36
SMARCA1-203ENST00000371123 DNAJC5BQ9UF47 199 aa12.8□□□□□ -0.36
SMARCA1-203ENST00000371123 BAZ1BQ9UIG0 1483 aaKnown RBP12.76□□□□□ -0.37
SMARCA1-203ENST00000371123 CCDC88BA6NC98 1476 aa12.76□□□□□ -0.37
SMARCA1-203ENST00000371123 RUSC2Q8N2Y8 1516 aa12.75□□□□□ -0.37
SMARCA1-203ENST00000371123 SOGA1O94964 1423 aa12.72□□□□□ -0.37
SMARCA1-203ENST00000371123 CLSPNQ9HAW4 1339 aa12.72□□□□□ -0.37
SMARCA1-203ENST00000371123 ANO8Q9HCE9 1232 aaPredicted RBP12.72□□□□□ -0.37
SMARCA1-203ENST00000371123 LAMC3Q9Y6N6 1575 aa12.7□□□□□ -0.38
SMARCA1-203ENST00000371123 FKBP8Q14318 412 aa12.68□□□□□ -0.38
SMARCA1-203ENST00000371123 TNIKQ9UKE5 1360 aa12.65□□□□□ -0.38
SMARCA1-203ENST00000371123 DHX57Q6P158 1386 aaKnown RBP12.63□□□□□ -0.39
SMARCA1-203ENST00000371123 CFTRP13569 1480 aa12.61□□□□□ -0.39
SMARCA1-203ENST00000371123 SALL2Q9Y467 1007 aaPredicted RBP12.56□□□□□ -0.4
SMARCA1-203ENST00000371123 THOC2Q8NI27 1593 aaKnown RBP12.54□□□□□ -0.4
SMARCA1-203ENST00000371123 HIRIP3Q9BW71 556 aaPredicted RBP12.52□□□□□ -0.41
SMARCA1-203ENST00000371123 DEKP35659 375 aaKnown RBP12.52□□□□□ -0.41
SMARCA1-203ENST00000371123 POLR3GLQ9BT43 218 aa12.51□□□□□ -0.41
SMARCA1-203ENST00000371123 KIF21AQ7Z4S6 1674 aa12.51□□□□□ -0.41
SMARCA1-203ENST00000371123 FANCIQ9NVI1 1328 aa12.5□□□□□ -0.41
SMARCA1-203ENST00000371123 CLIP1P30622 1438 aa12.49□□□□□ -0.41
SMARCA1-203ENST00000371123 SENP3-EIF4A1A0A087X0R7 540 aa12.49□□□□□ -0.41
SMARCA1-203ENST00000371123 CADPSQ9ULU8 1353 aa12.48□□□□□ -0.41
SMARCA1-203ENST00000371123 CCDC136Q96JN2 1154 aa12.48□□□□□ -0.41
SMARCA1-203ENST00000371123 TRIM52Q96A61 297 aa12.45□□□□□ -0.42
SMARCA1-203ENST00000371123 WDR62O43379 1518 aa12.45□□□□□ -0.42
SMARCA1-203ENST00000371123 P3H3Q8IVL6 736 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms