RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 CFAP44Q96MT7 982 aa13.1□□□□□ -0.31
RNU4-39P-201ENST00000362455 RNF25Q96BH1 459 aaPredicted RBP13.08□□□□□ -0.32
RNU4-39P-201ENST00000362455 VSIG10Q8N0Z9 540 aa13.06□□□□□ -0.32
RNU4-39P-201ENST00000362455 FAM212AQ96EL1 285 aa13.06□□□□□ -0.32
RNU4-39P-201ENST00000362455 FXR2P51116 673 aaKnown RBP eCLIP13.05□□□□□ -0.32
RNU4-39P-201ENST00000362455 CHADLQ6NUI6 762 aa13.03□□□□□ -0.32
RNU4-39P-201ENST00000362455 SPRYD3Q8NCJ5 442 aa13.03□□□□□ -0.32
RNU4-39P-201ENST00000362455 PRKAR2AP13861 404 aaKnown RBP13.02□□□□□ -0.33
RNU4-39P-201ENST00000362455 RASEFQ8IZ41 740 aa13.02□□□□□ -0.33
RNU4-39P-201ENST00000362455 HS6ST3Q8IZP7 471 aa13.02□□□□□ -0.33
RNU4-39P-201ENST00000362455 RIOK3O14730 519 aaKnown RBP12.99□□□□□ -0.33
RNU4-39P-201ENST00000362455 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
RNU4-39P-201ENST00000362455 FARP1Q9Y4F1 1045 aaPredicted RBP12.96□□□□□ -0.33
RNU4-39P-201ENST00000362455 TAOK2Q9UL54 1235 aa12.95□□□□□ -0.34
RNU4-39P-201ENST00000362455 CHRM1P11229 460 aaPredicted RBP12.94□□□□□ -0.34
RNU4-39P-201ENST00000362455 KDM2AQ9Y2K7 1162 aa12.94□□□□□ -0.34
RNU4-39P-201ENST00000362455 TSHZ2Q9NRE2 1034 aa12.92□□□□□ -0.34
RNU4-39P-201ENST00000362455 DNAJC5Q9H3Z4 198 aa12.91□□□□□ -0.34
RNU4-39P-201ENST00000362455 VGFO15240 615 aaPredicted RBP12.89□□□□□ -0.35
RNU4-39P-201ENST00000362455 PYGBP11216 843 aa12.88□□□□□ -0.35
RNU4-39P-201ENST00000362455 BCANQ96GW7 911 aa12.87□□□□□ -0.35
RNU4-39P-201ENST00000362455 STK25O00506 426 aa12.86□□□□□ -0.35
RNU4-39P-201ENST00000362455 NKX1-1Q15270 411 aaPredicted RBP12.85□□□□□ -0.35
RNU4-39P-201ENST00000362455 SGIP1Q9BQI5 828 aa12.81□□□□□ -0.36
RNU4-39P-201ENST00000362455 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.8□□□□□ -0.36
RNU4-39P-201ENST00000362455 ZFP91Q96JP5 570 aaPredicted RBP12.8□□□□□ -0.36
RNU4-39P-201ENST00000362455 TSPYL2Q9H2G4 693 aaPredicted RBP12.8□□□□□ -0.36
RNU4-39P-201ENST00000362455 GTPBP6O43824 516 aaPredicted RBP12.77□□□□□ -0.37
RNU4-39P-201ENST00000362455 PAK3O75914 559 aaPredicted RBP12.77□□□□□ -0.37
RNU4-39P-201ENST00000362455 BCL11BQ9C0K0 894 aaPredicted RBP12.77□□□□□ -0.37
RNU4-39P-201ENST00000362455 STK24Q9Y6E0 443 aa12.77□□□□□ -0.37
RNU4-39P-201ENST00000362455 ZNF467Q7Z7K2 595 aaPredicted RBP12.7□□□□□ -0.38
RNU4-39P-201ENST00000362455 CCDC61Q9Y6R9 512 aa12.68□□□□□ -0.38
RNU4-39P-201ENST00000362455 CD44P16070 742 aaKnown RBP12.66□□□□□ -0.38
RNU4-39P-201ENST00000362455 RYDENQ9NUL5 291 aaKnown RBP12.64□□□□□ -0.39
RNU4-39P-201ENST00000362455 PCDHB8Q9UN66 801 aa12.64□□□□□ -0.39
RNU4-39P-201ENST00000362455 PCDHB13Q9Y5F0 798 aa12.64□□□□□ -0.39
RNU4-39P-201ENST00000362455 PDAP1Q13442 181 aaKnown RBP12.63□□□□□ -0.39
RNU4-39P-201ENST00000362455 ZRANB1Q9UGI0 708 aa12.63□□□□□ -0.39
RNU4-39P-201ENST00000362455 C19orf67A6NJJ6 358 aa12.6□□□□□ -0.39
RNU4-39P-201ENST00000362455 ZNF579Q8NAF0 562 aaKnown RBP12.59□□□□□ -0.39
RNU4-39P-201ENST00000362455 PRKCSHP14314 528 aaPredicted RBP12.58□□□□□ -0.4
RNU4-39P-201ENST00000362455 PSEN1P49768 467 aa12.56□□□□□ -0.4
RNU4-39P-201ENST00000362455 IFNL1Q8IU54 200 aa12.53□□□□□ -0.4
RNU4-39P-201ENST00000362455 KIF12Q96FN5 646 aa12.53□□□□□ -0.4
RNU4-39P-201ENST00000362455 HAX1O00165 279 aa12.52□□□□□ -0.41
RNU4-39P-201ENST00000362455 MAP3K13O43283 966 aa12.52□□□□□ -0.41
RNU4-39P-201ENST00000362455 NBR1Q14596 966 aa12.5□□□□□ -0.41
RNU4-39P-201ENST00000362455 PHF12Q96QT6 1004 aa12.5□□□□□ -0.41
RNU4-39P-201ENST00000362455 TPRNQ4KMQ1 711 aa12.48□□□□□ -0.41
RNU4-39P-201ENST00000362455 MFRPQ9BY79 579 aa12.46□□□□□ -0.41
RNU4-39P-201ENST00000362455 POTEHQ6S545 545 aa12.45□□□□□ -0.42
RNU4-39P-201ENST00000362455 CADPS2Q86UW7 1296 aa12.41□□□□□ -0.42
RNU4-39P-201ENST00000362455 EFCAB3Q8N7B9 438 aa12.41□□□□□ -0.42
RNU4-39P-201ENST00000362455 CABP2Q9NPB3 220 aa12.41□□□□□ -0.42
RNU4-39P-201ENST00000362455 CLCN6P51797 869 aa12.39□□□□□ -0.43
RNU4-39P-201ENST00000362455 EVX2Q03828 476 aa12.37□□□□□ -0.43
RNU4-39P-201ENST00000362455 SOX12O15370 315 aa12.36□□□□□ -0.43
RNU4-39P-201ENST00000362455 FBXO22Q8NEZ5 403 aa12.36□□□□□ -0.43
RNU4-39P-201ENST00000362455 MS4A3Q96HJ5 214 aa12.36□□□□□ -0.43
RNU4-39P-201ENST00000362455 NLRP6P59044 892 aa12.35□□□□□ -0.43
RNU4-39P-201ENST00000362455 PHF8Q9UPP1 1060 aa12.35□□□□□ -0.43
RNU4-39P-201ENST00000362455 PPP1R37O75864 691 aa12.34□□□□□ -0.43
RNU4-39P-201ENST00000362455 WDR70Q9NW82 654 aa12.32□□□□□ -0.44
RNU4-39P-201ENST00000362455 P3H3Q8IVL6 736 aa12.31□□□□□ -0.44
RNU4-39P-201ENST00000362455 TMEM106CQ9BVX2 250 aa12.27□□□□□ -0.45
RNU4-39P-201ENST00000362455 GALR2O43603 387 aaPredicted RBP12.26□□□□□ -0.45
RNU4-39P-201ENST00000362455 KCNV2Q8TDN2 545 aa12.26□□□□□ -0.45
RNU4-39P-201ENST00000362455 TRPC6Q9Y210 931 aa12.26□□□□□ -0.45
RNU4-39P-201ENST00000362455 TIE1P35590 1138 aa12.25□□□□□ -0.45
RNU4-39P-201ENST00000362455 GOLGA2Q08379 1002 aa12.24□□□□□ -0.45
RNU4-39P-201ENST00000362455 MS4A4AQ96JQ5 239 aa12.23□□□□□ -0.45
RNU4-39P-201ENST00000362455 TTLL13PA6NNM8 815 aa12.19□□□□□ -0.46
RNU4-39P-201ENST00000362455 GABBR2O75899 941 aa12.19□□□□□ -0.46
RNU4-39P-201ENST00000362455 BMP2KQ9NSY1 1161 aaPredicted RBP12.19□□□□□ -0.46
RNU4-39P-201ENST00000362455 MKRN3Q13064 507 aaKnown RBP12.17□□□□□ -0.46
RNU4-39P-201ENST00000362455 NCKAP5LQ9HCH0 1330 aa12.14□□□□□ -0.47
RNU4-39P-201ENST00000362455 E2F4Q16254 413 aa12.13□□□□□ -0.47
RNU4-39P-201ENST00000362455 TRIM35Q9UPQ4 493 aa12.11□□□□□ -0.47
RNU4-39P-201ENST00000362455 SP7Q8TDD2 431 aaPredicted RBP12.1□□□□□ -0.47
RNU4-39P-201ENST00000362455 ARHGEF1Q92888 912 aaKnown RBP12.1□□□□□ -0.47
RNU4-39P-201ENST00000362455 LARP6Q9BRS8 491 aaKnown RBP12.1□□□□□ -0.47
RNU4-39P-201ENST00000362455 ATMINO43313 823 aaPredicted RBP12.09□□□□□ -0.47
RNU4-39P-201ENST00000362455 PDE4AP27815 886 aa12.09□□□□□ -0.47
RNU4-39P-201ENST00000362455 ASTLQ6HA08 431 aaPredicted RBP12.09□□□□□ -0.47
RNU4-39P-201ENST00000362455 DCBLD2Q96PD2 775 aa12.09□□□□□ -0.47
RNU4-39P-201ENST00000362455 ATN1P54259 1190 aaPredicted RBP12.08□□□□□ -0.48
RNU4-39P-201ENST00000362455 CRISPLD2Q9H0B8 497 aa12.08□□□□□ -0.48
RNU4-39P-201ENST00000362455 ILDR1Q86SU0 546 aaPredicted RBP12.07□□□□□ -0.48
RNU4-39P-201ENST00000362455 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.07□□□□□ -0.48
RNU4-39P-201ENST00000362455 MFSD10Q14728 455 aa12.06□□□□□ -0.48
RNU4-39P-201ENST00000362455 LMOD2Q6P5Q4 547 aa12.04□□□□□ -0.48
RNU4-39P-201ENST00000362455 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.04□□□□□ -0.48
RNU4-39P-201ENST00000362455 DDX27Q96GQ7 796 aaKnown RBP12.03□□□□□ -0.48
RNU4-39P-201ENST00000362455 IER5LQ5T953 404 aa12.01□□□□□ -0.49
RNU4-39P-201ENST00000362455 TULP1O00294 542 aaPredicted RBP11.99□□□□□ -0.49
RNU4-39P-201ENST00000362455 SEMA3EO15041 775 aa11.99□□□□□ -0.49
RNU4-39P-201ENST00000362455 DPY19L2Q6NUT2 758 aa11.98□□□□□ -0.49
RNU4-39P-201ENST00000362455 TESPA1A2RU30 521 aaPredicted RBP11.96□□□□□ -0.49
RNU4-39P-201ENST00000362455 CAMK2BQ13554 666 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms