RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 AEBP2Q6ZN18 517 aaPredicted RBP24.35■■□□□ 1.49
RNU4-39P-201ENST00000362455 CHIC1Q5VXU3 224 aa24.04■■□□□ 1.44
RNU4-39P-201ENST00000362455 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
RNU4-39P-201ENST00000362455 SENP3Q9H4L4 574 aaPredicted RBP20.71■□□□□ 0.91
RNU4-39P-201ENST00000362455 PLPPR3Q6T4P5 718 aa19.64■□□□□ 0.73
RNU4-39P-201ENST00000362455 FOXD1Q16676 465 aa19.15■□□□□ 0.66
RNU4-39P-201ENST00000362455 ADRA2BP18089 450 aa18.58■□□□□ 0.56
RNU4-39P-201ENST00000362455 PPP6R1Q9UPN7 881 aa18.56■□□□□ 0.56
RNU4-39P-201ENST00000362455 PIAS4Q8N2W9 510 aaPredicted RBP18.14■□□□□ 0.49
RNU4-39P-201ENST00000362455 MSH5O43196 834 aa17.63■□□□□ 0.41
RNU4-39P-201ENST00000362455 KCNA4P22459 653 aa17.61■□□□□ 0.41
RNU4-39P-201ENST00000362455 PPP4R3CPQ6ZMV5 832 aa17.38■□□□□ 0.37
RNU4-39P-201ENST00000362455 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
RNU4-39P-201ENST00000362455 NCBP3Q53F19 620 aaKnown RBP17.05■□□□□ 0.32
RNU4-39P-201ENST00000362455 EHMT2Q96KQ7 1210 aa17.03■□□□□ 0.32
RNU4-39P-201ENST00000362455 SLC4A1APQ9BWU0 796 aaKnown RBP16.86■□□□□ 0.29
RNU4-39P-201ENST00000362455 NPM3O75607 178 aaKnown RBP16.84■□□□□ 0.29
RNU4-39P-201ENST00000362455 CNKSR2Q8WXI2 1034 aa16.81■□□□□ 0.28
RNU4-39P-201ENST00000362455 MAPK8IP2Q13387 824 aaPredicted RBP16.78■□□□□ 0.28
RNU4-39P-201ENST00000362455 CSRNP3Q8WYN3 585 aa16.57■□□□□ 0.24
RNU4-39P-201ENST00000362455 DMRT2Q9Y5R5 561 aa16.55■□□□□ 0.24
RNU4-39P-201ENST00000362455 RNF216Q9NWF9 866 aaPredicted RBP16.42■□□□□ 0.22
RNU4-39P-201ENST00000362455 HOXD11P31277 338 aaPredicted RBP16.28■□□□□ 0.2
RNU4-39P-201ENST00000362455 ZBTB22O15209 634 aa16.23■□□□□ 0.19
RNU4-39P-201ENST00000362455 DNAJC5BQ9UF47 199 aa16.23■□□□□ 0.19
RNU4-39P-201ENST00000362455 FOXD4L1Q9NU39 408 aa16.04■□□□□ 0.16
RNU4-39P-201ENST00000362455 DCAF8L1A6NGE4 600 aa15.84■□□□□ 0.13
RNU4-39P-201ENST00000362455 SLC4A2P04920 1241 aa15.77■□□□□ 0.12
RNU4-39P-201ENST00000362455 POTEDQ86YR6 584 aa15.64■□□□□ 0.09
RNU4-39P-201ENST00000362455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.55■□□□□ 0.08
RNU4-39P-201ENST00000362455 MYCNP04198 464 aaPredicted RBP15.53■□□□□ 0.08
RNU4-39P-201ENST00000362455 ATXN8OSP0DMR3 200 aa15.4■□□□□ 0.06
RNU4-39P-201ENST00000362455 U3KPZ7 1027 aaPredicted RBP15.27■□□□□ 0.04
RNU4-39P-201ENST00000362455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.24■□□□□ 0.03
RNU4-39P-201ENST00000362455 HNRNPUL2Q1KMD3 747 aaKnown RBP15.24■□□□□ 0.03
RNU4-39P-201ENST00000362455 SAMD1Q6SPF0 538 aaPredicted RBP15.17■□□□□ 0.02
RNU4-39P-201ENST00000362455 ATF5Q9Y2D1 282 aaPredicted RBP15.11■□□□□ 0.01
RNU4-39P-201ENST00000362455 RNF39Q9H2S5 420 aa15.09■□□□□ 0.01
RNU4-39P-201ENST00000362455 APLP2Q06481 763 aa15.05■□□□□ -0
RNU4-39P-201ENST00000362455 C1QBPQ07021 282 aaKnown RBP14.96□□□□□ -0.01
RNU4-39P-201ENST00000362455 FKBP8Q14318 412 aa14.94□□□□□ -0.02
RNU4-39P-201ENST00000362455 ZNF219Q9P2Y4 722 aaPredicted RBP14.79□□□□□ -0.04
RNU4-39P-201ENST00000362455 SPINK5Q9NQ38 1064 aaPredicted RBP14.78□□□□□ -0.04
RNU4-39P-201ENST00000362455 CAPN15O75808 1086 aa14.75□□□□□ -0.05
RNU4-39P-201ENST00000362455 TRHP20396 242 aaPredicted RBP14.73□□□□□ -0.05
RNU4-39P-201ENST00000362455 CACNB1Q02641 598 aaPredicted RBP14.58□□□□□ -0.08
RNU4-39P-201ENST00000362455 RTN4Q9NQC3 1192 aaKnown RBP14.57□□□□□ -0.08
RNU4-39P-201ENST00000362455 AMER1Q5JTC6 1135 aaPredicted RBP14.56□□□□□ -0.08
RNU4-39P-201ENST00000362455 POLA2Q14181 598 aa14.53□□□□□ -0.08
RNU4-39P-201ENST00000362455 MKRN4PQ13434 485 aaPredicted RBP14.48□□□□□ -0.09
RNU4-39P-201ENST00000362455 ABCB7O75027 752 aa14.46□□□□□ -0.09
RNU4-39P-201ENST00000362455 DSG3P32926 999 aa14.43□□□□□ -0.1
RNU4-39P-201ENST00000362455 SPDYE4A6NLX3 237 aa14.4□□□□□ -0.1
RNU4-39P-201ENST00000362455 FBLN2P98095 1184 aa14.4□□□□□ -0.1
RNU4-39P-201ENST00000362455 ZBTB12Q9Y330 459 aaPredicted RBP14.36□□□□□ -0.11
RNU4-39P-201ENST00000362455 PROM2Q8N271 834 aa14.24□□□□□ -0.13
RNU4-39P-201ENST00000362455 FBXO3Q9UK99 471 aa14.23□□□□□ -0.13
RNU4-39P-201ENST00000362455 VASPP50552 380 aaPredicted RBP14.05□□□□□ -0.16
RNU4-39P-201ENST00000362455 SLC24A1O60721 1099 aa14.04□□□□□ -0.16
RNU4-39P-201ENST00000362455 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
RNU4-39P-201ENST00000362455 SPDYE2BA6NHP3 402 aa13.96□□□□□ -0.17
RNU4-39P-201ENST00000362455 SPDYE6P0CI01 402 aa13.96□□□□□ -0.17
RNU4-39P-201ENST00000362455 SPDYE2Q495Y8 402 aa13.96□□□□□ -0.17
RNU4-39P-201ENST00000362455 ZNF692Q9BU19 519 aaPredicted RBP13.94□□□□□ -0.18
RNU4-39P-201ENST00000362455 IFNLR1Q8IU57 520 aaPredicted RBP13.91□□□□□ -0.18
RNU4-39P-201ENST00000362455 SSUH2Q9Y2M2 353 aa13.86□□□□□ -0.19
RNU4-39P-201ENST00000362455 RBM42Q9BTD8 480 aaKnown RBP13.8□□□□□ -0.2
RNU4-39P-201ENST00000362455 PABPN1Q86U42 306 aaKnown RBP eCLIP13.77□□□□□ -0.21
RNU4-39P-201ENST00000362455 STAG3Q9UJ98 1225 aa13.74□□□□□ -0.21
RNU4-39P-201ENST00000362455 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
RNU4-39P-201ENST00000362455 AKT1S1Q96B36 256 aa13.66□□□□□ -0.22
RNU4-39P-201ENST00000362455 PKD2Q13563 968 aa13.65□□□□□ -0.22
RNU4-39P-201ENST00000362455 SPOCK2Q92563 424 aa13.64□□□□□ -0.23
RNU4-39P-201ENST00000362455 PLCD3Q8N3E9 789 aa13.63□□□□□ -0.23
RNU4-39P-201ENST00000362455 MIER1Q8N108 512 aa13.59□□□□□ -0.23
RNU4-39P-201ENST00000362455 DCAF8L2P0C7V8 631 aa13.56□□□□□ -0.24
RNU4-39P-201ENST00000362455 REM2Q8IYK8 340 aaPredicted RBP13.51□□□□□ -0.25
RNU4-39P-201ENST00000362455 SPDYE1Q8NFV5 336 aaPredicted RBP13.51□□□□□ -0.25
RNU4-39P-201ENST00000362455 ECM2O94769 699 aaPredicted RBP13.46□□□□□ -0.25
RNU4-39P-201ENST00000362455 PLCB2Q00722 1185 aa13.46□□□□□ -0.25
RNU4-39P-201ENST00000362455 PLEKHG5O94827 1062 aa13.45□□□□□ -0.26
RNU4-39P-201ENST00000362455 ZBTB47Q9UFB7 747 aaPredicted RBP13.42□□□□□ -0.26
RNU4-39P-201ENST00000362455 CLEC11AQ9Y240 323 aa13.42□□□□□ -0.26
RNU4-39P-201ENST00000362455 PRR29P0C7W0 189 aa13.34□□□□□ -0.27
RNU4-39P-201ENST00000362455 CIZ1Q9ULV3 898 aaPredicted RBP13.34□□□□□ -0.27
RNU4-39P-201ENST00000362455 PITPNM1O00562 1244 aa13.33□□□□□ -0.28
RNU4-39P-201ENST00000362455 RGL2O15211 777 aa13.33□□□□□ -0.28
RNU4-39P-201ENST00000362455 HAP1P54257 671 aaPredicted RBP13.27□□□□□ -0.29
RNU4-39P-201ENST00000362455 NPM1P06748 294 aaKnown RBP eCLIP13.26□□□□□ -0.29
RNU4-39P-201ENST00000362455 BBXQ8WY36 941 aaPredicted RBP13.24□□□□□ -0.29
RNU4-39P-201ENST00000362455 NUBP1P53384 320 aa13.2□□□□□ -0.3
RNU4-39P-201ENST00000362455 TRIM41Q8WV44 630 aa13.2□□□□□ -0.3
RNU4-39P-201ENST00000362455 CREBZFQ9NS37 354 aa13.2□□□□□ -0.3
RNU4-39P-201ENST00000362455 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.2□□□□□ -0.3
RNU4-39P-201ENST00000362455 GSE1Q14687 1217 aa13.18□□□□□ -0.3
RNU4-39P-201ENST00000362455 MNX1P50219 401 aaPredicted RBP13.13□□□□□ -0.31
RNU4-39P-201ENST00000362455 PAXIP1Q6ZW49 1069 aaPredicted RBP13.13□□□□□ -0.31
RNU4-39P-201ENST00000362455 CHGAP10645 457 aaKnown RBP13.12□□□□□ -0.31
RNU4-39P-201ENST00000362455 DCAF8Q5TAQ9 597 aa13.11□□□□□ -0.31
RNU4-39P-201ENST00000362455 CHRDL2Q6WN34 429 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms