RNA–Protein interactions for RNA: ENST00000360565.7

SCAF1-201, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene SCAF1, Length 4,306 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-201ENST00000360565 CUX2O14529 1486 aa22.27■■□□□ 1.16
SCAF1-201ENST00000360565 KDM2AQ9Y2K7 1162 aa22.26■■□□□ 1.15
SCAF1-201ENST00000360565 SALL2Q9Y467 1007 aaPredicted RBP22.26■■□□□ 1.15
SCAF1-201ENST00000360565 IRX6P78412 446 aaPredicted RBP22.25■■□□□ 1.15
SCAF1-201ENST00000360565 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.24■■□□□ 1.152e-7■■■□□ 14.9
SCAF1-201ENST00000360565 TMC1Q8TDI8 760 aa22.24■■□□□ 1.15
SCAF1-201ENST00000360565 RUSC2Q8N2Y8 1516 aa22.2■■□□□ 1.15
SCAF1-201ENST00000360565 ANP32AP39687 249 aaKnown RBP22.17■■□□□ 1.14
SCAF1-201ENST00000360565 FHAD1B1AJZ9 1412 aa22.16■■□□□ 1.14
SCAF1-201ENST00000360565 CANXP27824 592 aaKnown RBP22.15■■□□□ 1.14
SCAF1-201ENST00000360565 SMARCA2P51531 1590 aa22.14■■□□□ 1.13
SCAF1-201ENST00000360565 NPM2Q86SE8 214 aaKnown RBP22.13■■□□□ 1.13
SCAF1-201ENST00000360565 CCDC136Q96JN2 1154 aa22.1■■□□□ 1.13
SCAF1-201ENST00000360565 RAPGEF2Q9Y4G8 1499 aa22.1■■□□□ 1.13
SCAF1-201ENST00000360565 CHGAP10645 457 aaKnown RBP22.09■■□□□ 1.13
SCAF1-201ENST00000360565 CFDP1Q9UEE9 299 aaPredicted RBP22.09■■□□□ 1.13
SCAF1-201ENST00000360565 SMARCA4P51532 1647 aa22.08■■□□□ 1.13
SCAF1-201ENST00000360565 PLEKHD1A6NEE1 506 aa22.08■■□□□ 1.12
SCAF1-201ENST00000360565 SETD5Q9C0A6 1442 aa22.05■■□□□ 1.12
SCAF1-201ENST00000360565 ATAD2BQ9ULI0 1458 aa22.04■■□□□ 1.12
SCAF1-201ENST00000360565 SENP3-EIF4A1A0A087X0R7 540 aa22.03■■□□□ 1.12
SCAF1-201ENST00000360565 SUPT16HQ9Y5B9 1047 aaKnown RBP22.03■■□□□ 1.12
SCAF1-201ENST00000360565 RAB3GAP2Q9H2M9 1393 aa22.01■■□□□ 1.11
SCAF1-201ENST00000360565 TIMELESSQ9UNS1 1208 aa22.01■■□□□ 1.11
SCAF1-201ENST00000360565 RGL3Q3MIN7 710 aa22■■□□□ 1.11
SCAF1-201ENST00000360565 KCNH8Q96L42 1107 aa21.97■■□□□ 1.11
SCAF1-201ENST00000360565 BCL11AQ9H165 835 aa21.96■■□□□ 1.11
SCAF1-201ENST00000360565 NEFMP07197 916 aa21.92■■□□□ 1.1
SCAF1-201ENST00000360565 TDRD9Q8NDG6 1382 aaKnown RBP21.92■■□□□ 1.1
SCAF1-201ENST00000360565 ARHGAP35Q9NRY4 1499 aa21.91■■□□□ 1.1
SCAF1-201ENST00000360565 CARD11Q9BXL7 1154 aa21.9■■□□□ 1.1
SCAF1-201ENST00000360565 WDR43Q15061 677 aaKnown RBP eCLIP21.89■■□□□ 1.1
SCAF1-201ENST00000360565 NPM1P06748 294 aaKnown RBP eCLIP21.89■■□□□ 1.09
SCAF1-201ENST00000360565 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
SCAF1-201ENST00000360565 ZBTB47Q9UFB7 747 aaPredicted RBP21.87■■□□□ 1.09
SCAF1-201ENST00000360565 CADPSQ9ULU8 1353 aa21.86■■□□□ 1.09
SCAF1-201ENST00000360565 DHX57Q6P158 1386 aaKnown RBP21.85■■□□□ 1.09
SCAF1-201ENST00000360565 PPP1R15AO75807 674 aaPredicted RBP21.84■■□□□ 1.09
SCAF1-201ENST00000360565 FOXD1Q16676 465 aa21.84■■□□□ 1.09
SCAF1-201ENST00000360565 CCER2I3L3R5 266 aa21.82■■□□□ 1.08
SCAF1-201ENST00000360565 FHOD3Q2V2M9 1422 aa21.81■■□□□ 1.08
SCAF1-201ENST00000360565 HSPA5P11021 654 aaKnown RBP21.81■■□□□ 1.08
SCAF1-201ENST00000360565 NBR1Q14596 966 aa21.81■■□□□ 1.08
SCAF1-201ENST00000360565 FMN1Q68DA7 1419 aa21.79■■□□□ 1.08
SCAF1-201ENST00000360565 STAG3Q9UJ98 1225 aa21.78■■□□□ 1.08
SCAF1-201ENST00000360565 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.77■■□□□ 1.08
SCAF1-201ENST00000360565 SLC24A1O60721 1099 aa21.74■■□□□ 1.07
SCAF1-201ENST00000360565 PPP4R2Q9NY27 417 aa21.72■■□□□ 1.07
SCAF1-201ENST00000360565 MPHOSPH9Q99550 1183 aa21.72■■□□□ 1.07
SCAF1-201ENST00000360565 DCAF11Q8TEB1 546 aa21.71■■□□□ 1.07
SCAF1-201ENST00000360565 B4GALNT3Q6L9W6 998 aa21.69■■□□□ 1.06
SCAF1-201ENST00000360565 ANP32EQ9BTT0 268 aa21.69■■□□□ 1.06
SCAF1-201ENST00000360565 SENP3Q9H4L4 574 aaPredicted RBP21.69■■□□□ 1.06
SCAF1-201ENST00000360565 PDS5BQ9NTI5 1447 aa21.68■■□□□ 1.06
SCAF1-201ENST00000360565 ESF1Q9H501 851 aaKnown RBP21.68■■□□□ 1.06
SCAF1-201ENST00000360565 PKD2Q13563 968 aa21.67■■□□□ 1.06
SCAF1-201ENST00000360565 ERCC6Q03468 1493 aa21.67■■□□□ 1.06
SCAF1-201ENST00000360565 KNSTRNQ9Y448 316 aa21.66■■□□□ 1.06
SCAF1-201ENST00000360565 IGF1RP08069 1367 aa21.64■■□□□ 1.06
SCAF1-201ENST00000360565 L3MBTL2Q969R5 705 aa21.64■■□□□ 1.05
SCAF1-201ENST00000360565 UPF2Q9HAU5 1272 aaKnown RBP21.64■■□□□ 1.05
SCAF1-201ENST00000360565 CC2D1BQ5T0F9 858 aaKnown RBP21.59■■□□□ 1.05
SCAF1-201ENST00000360565 CDCA8Q53HL2 280 aa21.59■■□□□ 1.05
SCAF1-201ENST00000360565 KIF21BO75037 1637 aa21.59■■□□□ 1.05
SCAF1-201ENST00000360565 FANCD2Q9BXW9 1451 aa21.55■■□□□ 1.04
SCAF1-201ENST00000360565 RBM19Q9Y4C8 960 aaKnown RBP21.54■■□□□ 1.04
SCAF1-201ENST00000360565 PLPPR3Q6T4P5 718 aa21.52■■□□□ 1.04
SCAF1-201ENST00000360565 HSP90AA1P07900 732 aaKnown RBP21.51■■□□□ 1.03
SCAF1-201ENST00000360565 NUP155O75694 1391 aa21.51■■□□□ 1.03
SCAF1-201ENST00000360565 TSHZ2Q9NRE2 1034 aa21.5■■□□□ 1.03
SCAF1-201ENST00000360565 SYNJ1O43426 1573 aa21.49■■□□□ 1.03
SCAF1-201ENST00000360565 FGD5Q6ZNL6 1462 aa21.49■■□□□ 1.03
SCAF1-201ENST00000360565 NEUROD2Q15784 382 aa21.49■■□□□ 1.03
SCAF1-201ENST00000360565 TMF1P82094 1093 aa21.48■■□□□ 1.03
SCAF1-201ENST00000360565 CARMIL2Q6F5E8 1435 aa21.46■■□□□ 1.03
SCAF1-201ENST00000360565 NCAPD3P42695 1498 aa21.46■■□□□ 1.03
SCAF1-201ENST00000360565 PHLDB1Q86UU1 1377 aa21.45■■□□□ 1.02
SCAF1-201ENST00000360565 ARAP1Q96P48 1450 aa21.45■■□□□ 1.02
SCAF1-201ENST00000360565 ANKRD30AQ9BXX3 1397 aa21.44■■□□□ 1.02
SCAF1-201ENST00000360565 TNNT2P45379 298 aaPredicted RBP21.43■■□□□ 1.02
SCAF1-201ENST00000360565 RAD54L2Q9Y4B4 1467 aa21.42■■□□□ 1.02
SCAF1-201ENST00000360565 CFAP53Q96M91 514 aa21.41■■□□□ 1.02
SCAF1-201ENST00000360565 CCDC18Q5T9S5 1454 aa21.4■■□□□ 1.02
SCAF1-201ENST00000360565 HNRNPMP52272 730 aaKnown RBP eCLIP21.39■■□□□ 1.025e-6■■□□□ 13.2
SCAF1-201ENST00000360565 RGS3P49796 1198 aa21.38■■□□□ 1.01
SCAF1-201ENST00000360565 DDRGK1Q96HY6 314 aa21.37■■□□□ 1.01
SCAF1-201ENST00000360565 JPH4Q96JJ6 628 aa21.37■■□□□ 1.01
SCAF1-201ENST00000360565 ARXQ96QS3 562 aa21.36■■□□□ 1.01
SCAF1-201ENST00000360565 ERICH6BQ5W0A0 696 aa21.36■■□□□ 1.01
SCAF1-201ENST00000360565 NOP58Q9Y2X3 529 aaKnown RBP21.36■■□□□ 1.01
SCAF1-201ENST00000360565 ROCK2O75116 1388 aaKnown RBP21.35■■□□□ 1.01
SCAF1-201ENST00000360565 LRRC9Q6ZRR7 1453 aa21.35■■□□□ 1.01
SCAF1-201ENST00000360565 PPM1GO15355 546 aaPredicted RBP21.33■■□□□ 1.01
SCAF1-201ENST00000360565 PRXQ9BXM0 1461 aa21.33■■□□□ 1.01
SCAF1-201ENST00000360565 KTN1Q86UP2 1357 aaKnown RBP21.33■■□□□ 1.01
SCAF1-201ENST00000360565 FRAT1Q92837 279 aaPredicted RBP21.33■■□□□ 1
SCAF1-201ENST00000360565 FGD6Q6ZV73 1430 aa21.33■■□□□ 1
SCAF1-201ENST00000360565 PRKRIP1Q9H875 184 aaPredicted RBP21.32■■□□□ 1
SCAF1-201ENST00000360565 ERICH3Q5RHP9 1530 aa21.31■■□□□ 1
SCAF1-201ENST00000360565 LAS1LQ9Y4W2 734 aaKnown RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms