RNA–Protein interactions for RNA: ENST00000360565.7

SCAF1-201, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene SCAF1, Length 4,306 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-201ENST00000360565 NISCHQ9Y2I1 1504 aa29.33■■■□□ 2.28
SCAF1-201ENST00000360565 DCAF8L2P0C7V8 631 aa28.54■■■□□ 2.16
SCAF1-201ENST00000360565 SUPT5HO00267 1087 aaKnown RBP27.75■■■□□ 2.03
SCAF1-201ENST00000360565 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
SCAF1-201ENST00000360565 EHMT2Q96KQ7 1210 aa26.4■■□□□ 1.82
SCAF1-201ENST00000360565 PCGF6Q9BYE7 350 aa26.05■■□□□ 1.76
SCAF1-201ENST00000360565 FAM9AQ8IZU1 332 aaPredicted RBP26.02■■□□□ 1.76
SCAF1-201ENST00000360565 TRIM41Q8WV44 630 aa25.66■■□□□ 1.7
SCAF1-201ENST00000360565 TTBK1Q5TCY1 1321 aaPredicted RBP25.51■■□□□ 1.67
SCAF1-201ENST00000360565 CHIC1Q5VXU3 224 aa25.41■■□□□ 1.66
SCAF1-201ENST00000360565 APLP2Q06481 763 aa25.4■■□□□ 1.66
SCAF1-201ENST00000360565 LOC105371045A0A1W2PR82 267 aa25.21■■□□□ 1.63
SCAF1-201ENST00000360565 ZEB1P37275 1124 aaPredicted RBP25.18■■□□□ 1.62
SCAF1-201ENST00000360565 RANGAP1P46060 587 aaPredicted RBP25.12■■□□□ 1.61
SCAF1-201ENST00000360565 CCER1Q8TC90 406 aaPredicted RBP25.11■■□□□ 1.61
SCAF1-201ENST00000360565 HRCP23327 699 aa25.09■■□□□ 1.61
SCAF1-201ENST00000360565 UBTFP17480 764 aaKnown RBP25.05■■□□□ 1.6
SCAF1-201ENST00000360565 PPARGC1BQ86YN6 1023 aaKnown RBP25.05■■□□□ 1.6
SCAF1-201ENST00000360565 TRIM26Q12899 539 aaPredicted RBP25.03■■□□□ 1.6
SCAF1-201ENST00000360565 CENPBP07199 599 aaPredicted RBP24.72■■□□□ 1.55
SCAF1-201ENST00000360565 PELP1Q8IZL8 1130 aaKnown RBP24.71■■□□□ 1.55
SCAF1-201ENST00000360565 ATP1B4Q9UN42 357 aaPredicted RBP24.6■■□□□ 1.53
SCAF1-201ENST00000360565 ABCC9O60706 1549 aa24.5■■□□□ 1.51
SCAF1-201ENST00000360565 ZCCHC6Q5VYS8 1495 aaKnown RBP24.43■■□□□ 1.5
SCAF1-201ENST00000360565 YTHDC1Q96MU7 727 aaKnown RBP24.42■■□□□ 1.5
SCAF1-201ENST00000360565 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.32■■□□□ 1.48
SCAF1-201ENST00000360565 HNRNPUL2Q1KMD3 747 aaKnown RBP24.31■■□□□ 1.48
SCAF1-201ENST00000360565 PABPN1Q86U42 306 aaKnown RBP eCLIP24.24■■□□□ 1.47
SCAF1-201ENST00000360565 ITGAEP38570 1179 aa24.19■■□□□ 1.46
SCAF1-201ENST00000360565 DIEXFQ68CQ4 756 aaKnown RBP23.98■■□□□ 1.43
SCAF1-201ENST00000360565 CCDC180Q9P1Z9 1646 aa23.97■■□□□ 1.43
SCAF1-201ENST00000360565 SCRIBQ14160 1630 aa23.91■■□□□ 1.42
SCAF1-201ENST00000360565 NEFLP07196 543 aa23.86■■□□□ 1.41
SCAF1-201ENST00000360565 MYO15BQ96JP2 1530 aa23.83■■□□□ 1.4
SCAF1-201ENST00000360565 CSRNP3Q8WYN3 585 aa23.81■■□□□ 1.4
SCAF1-201ENST00000360565 DCAF1Q9Y4B6 1507 aa23.8■■□□□ 1.4
SCAF1-201ENST00000360565 ERICH6Q7L0X2 663 aa23.67■■□□□ 1.38
SCAF1-201ENST00000360565 FAM50AQ14320 339 aaKnown RBP23.61■■□□□ 1.37
SCAF1-201ENST00000360565 RSF1Q96T23 1441 aaPredicted RBP23.57■■□□□ 1.36
SCAF1-201ENST00000360565 ZNF316A6NFI3 1004 aaPredicted RBP23.52■■□□□ 1.36
SCAF1-201ENST00000360565 GTF3C3Q9Y5Q9 886 aa23.51■■□□□ 1.35
SCAF1-201ENST00000360565 POLR3GLQ9BT43 218 aa23.48■■□□□ 1.35
SCAF1-201ENST00000360565 NEUROD1Q13562 356 aa23.46■■□□□ 1.35
SCAF1-201ENST00000360565 CNGB1Q14028 1251 aaPredicted RBP23.41■■□□□ 1.34
SCAF1-201ENST00000360565 MYT1Q01538 1121 aa23.36■■□□□ 1.33
SCAF1-201ENST00000360565 P3H3Q8IVL6 736 aa23.35■■□□□ 1.33
SCAF1-201ENST00000360565 ACIN1Q9UKV3 1341 aaKnown RBP23.34■■□□□ 1.33
SCAF1-201ENST00000360565 TRIM52Q96A61 297 aa23.28■■□□□ 1.32
SCAF1-201ENST00000360565 MYT1LQ9UL68 1186 aa23.15■■□□□ 1.3
SCAF1-201ENST00000360565 CECR2Q9BXF3 1484 aa23.12■■□□□ 1.29
SCAF1-201ENST00000360565 BCANQ96GW7 911 aa23.11■■□□□ 1.29
SCAF1-201ENST00000360565 NACADO15069 1562 aa23.09■■□□□ 1.29
SCAF1-201ENST00000360565 ANP32CO43423 234 aa23.09■■□□□ 1.29
SCAF1-201ENST00000360565 RB1CC1Q8TDY2 1594 aa23.08■■□□□ 1.28
SCAF1-201ENST00000360565 CEP162Q5TB80 1403 aa23.05■■□□□ 1.28
SCAF1-201ENST00000360565 ARID3CA6NKF2 412 aa23.05■■□□□ 1.28
SCAF1-201ENST00000360565 CLIP1P30622 1438 aa23.04■■□□□ 1.28
SCAF1-201ENST00000360565 ZNF326Q5BKZ1 582 aaKnown RBP22.97■■□□□ 1.27
SCAF1-201ENST00000360565 FBLN2P98095 1184 aa22.96■■□□□ 1.27
SCAF1-201ENST00000360565 EEA1Q15075 1411 aa22.96■■□□□ 1.27
SCAF1-201ENST00000360565 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
SCAF1-201ENST00000360565 SCAF1Q9H7N4 1312 aaKnown RBP22.93■■□□□ 1.26
SCAF1-201ENST00000360565 GOLGA3Q08378 1498 aa22.91■■□□□ 1.26
SCAF1-201ENST00000360565 TNIKQ9UKE5 1360 aa22.89■■□□□ 1.26
SCAF1-201ENST00000360565 MIER1Q8N108 512 aa22.87■■□□□ 1.25
SCAF1-201ENST00000360565 BAZ1AQ9NRL2 1556 aaPredicted RBP22.86■■□□□ 1.25
SCAF1-201ENST00000360565 DDX10Q13206 875 aaKnown RBP22.84■■□□□ 1.25
SCAF1-201ENST00000360565 MROH2BQ7Z745 1585 aa22.82■■□□□ 1.24
SCAF1-201ENST00000360565 TONSLQ96HA7 1378 aa22.77■■□□□ 1.24
SCAF1-201ENST00000360565 SOGA1O94964 1423 aa22.76■■□□□ 1.23
SCAF1-201ENST00000360565 ZNF777Q9ULD5 760 aaPredicted RBP22.75■■□□□ 1.23
SCAF1-201ENST00000360565 DAXXQ9UER7 740 aaPredicted RBP22.74■■□□□ 1.23
SCAF1-201ENST00000360565 BAZ1BQ9UIG0 1483 aaKnown RBP22.73■■□□□ 1.23
SCAF1-201ENST00000360565 CEP164Q9UPV0 1460 aa22.71■■□□□ 1.23
SCAF1-201ENST00000360565 SLC4A1APQ9BWU0 796 aaKnown RBP22.71■■□□□ 1.23
SCAF1-201ENST00000360565 CHIC2Q9UKJ5 165 aa22.69■■□□□ 1.22
SCAF1-201ENST00000360565 CDK11AQ9UQ88 783 aaPredicted RBP22.68■■□□□ 1.22
SCAF1-201ENST00000360565 FKBP8Q14318 412 aa22.65■■□□□ 1.22
SCAF1-201ENST00000360565 HIRIP3Q9BW71 556 aaPredicted RBP22.64■■□□□ 1.21
SCAF1-201ENST00000360565 MTUS2Q5JR59 1369 aa22.62■■□□□ 1.21
SCAF1-201ENST00000360565 CCDC88BA6NC98 1476 aa22.61■■□□□ 1.21
SCAF1-201ENST00000360565 ABCC8Q09428 1581 aa22.59■■□□□ 1.21
SCAF1-201ENST00000360565 KIF27Q86VH2 1401 aa22.58■■□□□ 1.21
SCAF1-201ENST00000360565 CLSPNQ9HAW4 1339 aa22.58■■□□□ 1.21
SCAF1-201ENST00000360565 HNRNPUQ00839 825 aaKnown RBP eCLIP22.57■■□□□ 1.2
SCAF1-201ENST00000360565 WIZO95785 1651 aa22.49■■□□□ 1.19
SCAF1-201ENST00000360565 RTL5Q5HYW3 569 aaPredicted RBP22.48■■□□□ 1.19
SCAF1-201ENST00000360565 FAM9BQ8IZU0 186 aa22.47■■□□□ 1.19
SCAF1-201ENST00000360565 RRP7BPQ9NSQ0 103 aa22.46■■□□□ 1.19
SCAF1-201ENST00000360565 VPS8Q8N3P4 1428 aa22.38■■□□□ 1.17
SCAF1-201ENST00000360565 SIN3AQ96ST3 1273 aa22.38■■□□□ 1.17
SCAF1-201ENST00000360565 KANK4Q5T7N3 995 aaPredicted RBP22.34■■□□□ 1.17
SCAF1-201ENST00000360565 CCNB3Q8WWL7 1395 aa22.34■■□□□ 1.17
SCAF1-201ENST00000360565 MRS2Q9HD23 443 aa22.31■■□□□ 1.16
SCAF1-201ENST00000360565 TOP2AP11388 1531 aaKnown RBP22.31■■□□□ 1.16
SCAF1-201ENST00000360565 EIF4G2P78344 907 aaKnown RBP eCLIP22.3■■□□□ 1.16
SCAF1-201ENST00000360565 CARMIL1Q5VZK9 1371 aa22.28■■□□□ 1.16
SCAF1-201ENST00000360565 TSPY4P0CV99 314 aa22.27■■□□□ 1.16
SCAF1-201ENST00000360565 TSPY10P0CW01 314 aa22.27■■□□□ 1.16
SCAF1-201ENST00000360565 CHMP7Q8WUX9 453 aaPredicted RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms