RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 CHMP7Q8WUX9 453 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-202ENST00000358808 ZRSR1Q15695 479 aaKnown RBP13.54□□□□□ -0.24
CLIP1-202ENST00000358808 SENP3Q9H4L4 574 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-202ENST00000358808 FKBP8Q14318 412 aa13.53□□□□□ -0.24
CLIP1-202ENST00000358808 NPHP1O15259 732 aa13.53□□□□□ -0.24
CLIP1-202ENST00000358808 NBR1Q14596 966 aa13.53□□□□□ -0.24
CLIP1-202ENST00000358808 HNRNPUQ00839 825 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLIP1-202ENST00000358808 CECR2Q9BXF3 1484 aa13.51□□□□□ -0.25
CLIP1-202ENST00000358808 TPRNQ4KMQ1 711 aa13.49□□□□□ -0.25
CLIP1-202ENST00000358808 PPP1R15AO75807 674 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-202ENST00000358808 CCDC136Q96JN2 1154 aa13.49□□□□□ -0.25
CLIP1-202ENST00000358808 TONSLQ96HA7 1378 aa13.48□□□□□ -0.25
CLIP1-202ENST00000358808 TMC1Q8TDI8 760 aa13.48□□□□□ -0.25
CLIP1-202ENST00000358808 TAOK2Q9UL54 1235 aa13.47□□□□□ -0.25
CLIP1-202ENST00000358808 CLSTN1O94985 981 aa13.46□□□□□ -0.26
CLIP1-202ENST00000358808 TRIM44Q96DX7 344 aaPredicted RBP13.44□□□□□ -0.26
CLIP1-202ENST00000358808 PDS5BQ9NTI5 1447 aa13.44□□□□□ -0.26
CLIP1-202ENST00000358808 PTMAP06454 111 aaKnown RBP13.43□□□□□ -0.26
CLIP1-202ENST00000358808 KDM2AQ9Y2K7 1162 aa13.42□□□□□ -0.26
CLIP1-202ENST00000358808 CHIC2Q9UKJ5 165 aa13.42□□□□□ -0.26
CLIP1-202ENST00000358808 TSPY4P0CV99 314 aa13.42□□□□□ -0.26
CLIP1-202ENST00000358808 TSPY10P0CW01 314 aa13.42□□□□□ -0.26
CLIP1-202ENST00000358808 GOLGA6L22H0YM25 854 aa13.41□□□□□ -0.26
CLIP1-202ENST00000358808 TNNT2P45379 298 aaPredicted RBP13.4□□□□□ -0.26
CLIP1-202ENST00000358808 ARID4BQ4LE39 1312 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-202ENST00000358808 DNTTIP2Q5QJE6 756 aaKnown RBP13.38□□□□□ -0.27
CLIP1-202ENST00000358808 KCNH8Q96L42 1107 aa13.38□□□□□ -0.27
CLIP1-202ENST00000358808 CASC1Q6TDU7 716 aa13.38□□□□□ -0.27
CLIP1-202ENST00000358808 BECN1Q14457 450 aa13.37□□□□□ -0.27
CLIP1-202ENST00000358808 WRNQ14191 1432 aaPredicted RBP eCLIP13.35□□□□□ -0.279e-6■■■■■ 50.1
CLIP1-202ENST00000358808 LMOD2Q6P5Q4 547 aa13.35□□□□□ -0.27
CLIP1-202ENST00000358808 MROH2BQ7Z745 1585 aa13.35□□□□□ -0.27
CLIP1-202ENST00000358808 DDX10Q13206 875 aaKnown RBP13.35□□□□□ -0.27
CLIP1-202ENST00000358808 GOLGA2Q08379 1002 aa13.33□□□□□ -0.27
CLIP1-202ENST00000358808 PPM1GO15355 546 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-202ENST00000358808 MTUS2Q5JR59 1369 aa13.31□□□□□ -0.28
CLIP1-202ENST00000358808 MRS2Q9HD23 443 aa13.31□□□□□ -0.28
CLIP1-202ENST00000358808 PRM3Q9NNZ6 103 aa13.31□□□□□ -0.28
CLIP1-202ENST00000358808 SMARCA4P51532 1647 aa13.31□□□□□ -0.28
CLIP1-202ENST00000358808 GOLGA6L6A8MZA4 724 aa13.31□□□□□ -0.28
CLIP1-202ENST00000358808 ISY1Q9ULR0 285 aaKnown RBP13.31□□□□□ -0.28
CLIP1-202ENST00000358808 NAP1L2Q9ULW6 460 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-202ENST00000358808 PLCB2Q00722 1185 aa13.3□□□□□ -0.28
CLIP1-202ENST00000358808 ANP32EQ9BTT0 268 aa13.29□□□□□ -0.28
CLIP1-202ENST00000358808 KIF27Q86VH2 1401 aa13.29□□□□□ -0.28
CLIP1-202ENST00000358808 FGD1P98174 961 aa13.29□□□□□ -0.28
CLIP1-202ENST00000358808 DDRGK1Q96HY6 314 aa13.29□□□□□ -0.28
CLIP1-202ENST00000358808 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
CLIP1-202ENST00000358808 LAS1LQ9Y4W2 734 aaKnown RBP13.27□□□□□ -0.28
CLIP1-202ENST00000358808 ATAD2BQ9ULI0 1458 aa13.27□□□□□ -0.28
CLIP1-202ENST00000358808 IRX6P78412 446 aaPredicted RBP13.27□□□□□ -0.28
CLIP1-202ENST00000358808 OS9Q13438 667 aaPredicted RBP13.27□□□□□ -0.28
CLIP1-202ENST00000358808 CFAP53Q96M91 514 aa13.26□□□□□ -0.29
CLIP1-202ENST00000358808 PLEKHD1A6NEE1 506 aa13.26□□□□□ -0.29
CLIP1-202ENST00000358808 FTSJ3Q8IY81 847 aaKnown RBP13.24□□□□□ -0.29
CLIP1-202ENST00000358808 CCDC88BA6NC98 1476 aa13.24□□□□□ -0.29
CLIP1-202ENST00000358808 EEA1Q15075 1411 aa13.23□□□□□ -0.29
CLIP1-202ENST00000358808 TRHP20396 242 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-202ENST00000358808 WIZO95785 1651 aa13.23□□□□□ -0.29
CLIP1-202ENST00000358808 CADPSQ9ULU8 1353 aa13.22□□□□□ -0.29
CLIP1-202ENST00000358808 CEP164Q9UPV0 1460 aa13.22□□□□□ -0.29
CLIP1-202ENST00000358808 KCNJ4P48050 445 aa13.22□□□□□ -0.29
CLIP1-202ENST00000358808 EIF4G1Q04637 1599 aaKnown RBP13.21□□□□□ -0.29
CLIP1-202ENST00000358808 NRDCO43847 1150 aa13.21□□□□□ -0.3
CLIP1-202ENST00000358808 MIER1Q8N108 512 aa13.21□□□□□ -0.3
CLIP1-202ENST00000358808 MAPK8IP3Q9UPT6 1336 aa13.18□□□□□ -0.3
CLIP1-202ENST00000358808 RRP7BPQ9NSQ0 103 aa13.17□□□□□ -0.3
CLIP1-202ENST00000358808 NAP1L5Q96NT1 182 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-202ENST00000358808 CUX2O14529 1486 aa13.15□□□□□ -0.3
CLIP1-202ENST00000358808 NEUROD2Q15784 382 aa13.15□□□□□ -0.3
CLIP1-202ENST00000358808 PNNQ9H307 717 aaKnown RBP13.15□□□□□ -0.3
CLIP1-202ENST00000358808 GOLGA6L4A6NEF3 574 aa13.15□□□□□ -0.3
CLIP1-202ENST00000358808 EIF4G2P78344 907 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLIP1-202ENST00000358808 SOGA1O94964 1423 aa13.14□□□□□ -0.31
CLIP1-202ENST00000358808 GOLGA3Q08378 1498 aa13.14□□□□□ -0.31
CLIP1-202ENST00000358808 RGL3Q3MIN7 710 aa13.13□□□□□ -0.31
CLIP1-202ENST00000358808 L1TD1Q5T7N2 865 aaKnown RBP13.13□□□□□ -0.31
CLIP1-202ENST00000358808 HSP90AB1P08238 724 aaKnown RBP13.13□□□□□ -0.31
CLIP1-202ENST00000358808 KIAA2012Q0VF49 1180 aa13.13□□□□□ -0.31
CLIP1-202ENST00000358808 POGKQ9P215 609 aa13.13□□□□□ -0.31
CLIP1-202ENST00000358808 SENP3-EIF4A1A0A087X0R7 540 aa13.12□□□□□ -0.31
CLIP1-202ENST00000358808 HIRIP3Q9BW71 556 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-202ENST00000358808 NOC3LQ8WTT2 800 aaKnown RBP13.12□□□□□ -0.31
CLIP1-202ENST00000358808 KNSTRNQ9Y448 316 aa13.11□□□□□ -0.31
CLIP1-202ENST00000358808 CC2D2AQ9P2K1 1620 aa13.11□□□□□ -0.31
CLIP1-202ENST00000358808 GNL2Q13823 731 aaKnown RBP13.11□□□□□ -0.31
CLIP1-202ENST00000358808 AMER1Q5JTC6 1135 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-202ENST00000358808 NUDCQ9Y266 331 aa13.11□□□□□ -0.31
CLIP1-202ENST00000358808 ABCC8Q09428 1581 aa13.1□□□□□ -0.31
CLIP1-202ENST00000358808 FANCD2Q9BXW9 1451 aa13.1□□□□□ -0.31
CLIP1-202ENST00000358808 CFDP1Q9UEE9 299 aaPredicted RBP13.1□□□□□ -0.31
CLIP1-202ENST00000358808 TMX4Q9H1E5 349 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-202ENST00000358808 PDE4CQ08493 712 aa13.09□□□□□ -0.31
CLIP1-202ENST00000358808 DRC7Q8IY82 874 aa13.09□□□□□ -0.31
CLIP1-202ENST00000358808 KRI1Q8N9T8 703 aaKnown RBP13.09□□□□□ -0.31
CLIP1-202ENST00000358808 CLIP1P30622 1438 aa13.09□□□□□ -0.31
CLIP1-202ENST00000358808 CHAF1AQ13111 956 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-202ENST00000358808 CDCA8Q53HL2 280 aa13.08□□□□□ -0.32
CLIP1-202ENST00000358808 FRAT1Q92837 279 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-202ENST00000358808 NCAPD3P42695 1498 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms