RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 DCAF8L2P0C7V8 631 aa17.49■□□□□ 0.39
CLIP1-202ENST00000358808 NISCHQ9Y2I1 1504 aa17.35■□□□□ 0.37
CLIP1-202ENST00000358808 PELP1Q8IZL8 1130 aaKnown RBP16.45■□□□□ 0.22
CLIP1-202ENST00000358808 EHMT2Q96KQ7 1210 aa16.24■□□□□ 0.19
CLIP1-202ENST00000358808 SUPT5HO00267 1087 aaKnown RBP16.21■□□□□ 0.18
CLIP1-202ENST00000358808 APLP2Q06481 763 aa16.02■□□□□ 0.15
CLIP1-202ENST00000358808 FAM9AQ8IZU1 332 aaPredicted RBP16.01■□□□□ 0.15
CLIP1-202ENST00000358808 SHROOM4Q9ULL8 1493 aa15.96■□□□□ 0.15
CLIP1-202ENST00000358808 ERICH6Q7L0X2 663 aa15.93■□□□□ 0.14
CLIP1-202ENST00000358808 CCER1Q8TC90 406 aaPredicted RBP15.74■□□□□ 0.11
CLIP1-202ENST00000358808 TTBK1Q5TCY1 1321 aaPredicted RBP15.69■□□□□ 0.1
CLIP1-202ENST00000358808 ATP1B4Q9UN42 357 aaPredicted RBP15.54■□□□□ 0.08
CLIP1-202ENST00000358808 RANGAP1P46060 587 aaPredicted RBP15.53■□□□□ 0.08
CLIP1-202ENST00000358808 PCGF6Q9BYE7 350 aa15.38■□□□□ 0.05
CLIP1-202ENST00000358808 CENPBP07199 599 aaPredicted RBP15.37■□□□□ 0.05
CLIP1-202ENST00000358808 NEFLP07196 543 aa15.33■□□□□ 0.05
CLIP1-202ENST00000358808 MYT1Q01538 1121 aa15.26■□□□□ 0.03
CLIP1-202ENST00000358808 MYT1LQ9UL68 1186 aa15.22■□□□□ 0.03
CLIP1-202ENST00000358808 DAXXQ9UER7 740 aaPredicted RBP15.2■□□□□ 0.02
CLIP1-202ENST00000358808 ABCC9O60706 1549 aa15.19■□□□□ 0.02
CLIP1-202ENST00000358808 YTHDC1Q96MU7 727 aaKnown RBP15.13■□□□□ 0.01
CLIP1-202ENST00000358808 POLR3GLQ9BT43 218 aa15.05■□□□□ -0
CLIP1-202ENST00000358808 UBTFP17480 764 aaKnown RBP15.03■□□□□ -0
CLIP1-202ENST00000358808 TRIM41Q8WV44 630 aa15.02■□□□□ -0
CLIP1-202ENST00000358808 ZEB1P37275 1124 aaPredicted RBP15.01□□□□□ -0.01
CLIP1-202ENST00000358808 CHIC1Q5VXU3 224 aa15.01□□□□□ -0.01
CLIP1-202ENST00000358808 SLC4A1APQ9BWU0 796 aaKnown RBP14.95□□□□□ -0.02
CLIP1-202ENST00000358808 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.93□□□□□ -0.02
CLIP1-202ENST00000358808 HNRNPUL2Q1KMD3 747 aaKnown RBP14.93□□□□□ -0.02
CLIP1-202ENST00000358808 CNGB1Q14028 1251 aaPredicted RBP14.88□□□□□ -0.03
CLIP1-202ENST00000358808 CCDC180Q9P1Z9 1646 aa14.84□□□□□ -0.03
CLIP1-202ENST00000358808 ZNF316A6NFI3 1004 aaPredicted RBP14.78□□□□□ -0.04
CLIP1-202ENST00000358808 CLSPNQ9HAW4 1339 aa14.77□□□□□ -0.04
CLIP1-202ENST00000358808 ITGAEP38570 1179 aa14.76□□□□□ -0.05
CLIP1-202ENST00000358808 PABPN1Q86U42 306 aaKnown RBP eCLIP14.73□□□□□ -0.05
CLIP1-202ENST00000358808 PPARGC1BQ86YN6 1023 aaKnown RBP14.71□□□□□ -0.06
CLIP1-202ENST00000358808 RTL5Q5HYW3 569 aaPredicted RBP14.64□□□□□ -0.07
CLIP1-202ENST00000358808 SLC24A1O60721 1099 aa14.57□□□□□ -0.08
CLIP1-202ENST00000358808 ZBTB47Q9UFB7 747 aaPredicted RBP14.55□□□□□ -0.08
CLIP1-202ENST00000358808 BCL11AQ9H165 835 aa14.48□□□□□ -0.09
CLIP1-202ENST00000358808 HRCP23327 699 aa14.48□□□□□ -0.09
CLIP1-202ENST00000358808 RB1CC1Q8TDY2 1594 aa14.47□□□□□ -0.09
CLIP1-202ENST00000358808 TRIM26Q12899 539 aaPredicted RBP14.42□□□□□ -0.1
CLIP1-202ENST00000358808 SCRIBQ14160 1630 aa14.4□□□□□ -0.1
CLIP1-202ENST00000358808 BCANQ96GW7 911 aa14.38□□□□□ -0.11
CLIP1-202ENST00000358808 ZCCHC6Q5VYS8 1495 aaKnown RBP14.37□□□□□ -0.11
CLIP1-202ENST00000358808 TRIM52Q96A61 297 aa14.33□□□□□ -0.12
CLIP1-202ENST00000358808 CANXP27824 592 aaKnown RBP14.31□□□□□ -0.12
CLIP1-202ENST00000358808 NACADO15069 1562 aa14.3□□□□□ -0.12
CLIP1-202ENST00000358808 NEFMP07197 916 aa14.27□□□□□ -0.12
CLIP1-202ENST00000358808 LOC105371045A0A1W2PR82 267 aa14.26□□□□□ -0.13
CLIP1-202ENST00000358808 FAM50AQ14320 339 aaKnown RBP14.26□□□□□ -0.13
CLIP1-202ENST00000358808 ZNF326Q5BKZ1 582 aaKnown RBP14.26□□□□□ -0.13
CLIP1-202ENST00000358808 FBLN2P98095 1184 aa14.24□□□□□ -0.13
CLIP1-202ENST00000358808 NEUROD1Q13562 356 aa14.17□□□□□ -0.14
CLIP1-202ENST00000358808 CDK11AQ9UQ88 783 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-202ENST00000358808 DIEXFQ68CQ4 756 aaKnown RBP14.1□□□□□ -0.15
CLIP1-202ENST00000358808 PLPPR3Q6T4P5 718 aa14.09□□□□□ -0.15
CLIP1-202ENST00000358808 ESF1Q9H501 851 aaKnown RBP14.06□□□□□ -0.16
CLIP1-202ENST00000358808 ANP32CO43423 234 aa14.05□□□□□ -0.16
CLIP1-202ENST00000358808 ANP32BQ92688 251 aaKnown RBP14.05□□□□□ -0.16
CLIP1-202ENST00000358808 CDK11BP21127 795 aaKnown RBP14.01□□□□□ -0.17
CLIP1-202ENST00000358808 HSP90AA1P07900 732 aaKnown RBP14.01□□□□□ -0.17
CLIP1-202ENST00000358808 GTF3C3Q9Y5Q9 886 aa14□□□□□ -0.17
CLIP1-202ENST00000358808 NPM2Q86SE8 214 aaKnown RBP13.98□□□□□ -0.17
CLIP1-202ENST00000358808 STAG3Q9UJ98 1225 aa13.96□□□□□ -0.17
CLIP1-202ENST00000358808 A0A0G2JS52 829 aa13.96□□□□□ -0.18
CLIP1-202ENST00000358808 ANP32AP39687 249 aaKnown RBP13.94□□□□□ -0.18
CLIP1-202ENST00000358808 DCAF1Q9Y4B6 1507 aa13.93□□□□□ -0.18
CLIP1-202ENST00000358808 ARID3CA6NKF2 412 aa13.93□□□□□ -0.18
CLIP1-202ENST00000358808 SCAF1Q9H7N4 1312 aaKnown RBP13.92□□□□□ -0.18
CLIP1-202ENST00000358808 EIF5BO60841 1220 aaKnown RBP13.91□□□□□ -0.18
CLIP1-202ENST00000358808 CHGAP10645 457 aaKnown RBP13.89□□□□□ -0.19
CLIP1-202ENST00000358808 P3H3Q8IVL6 736 aa13.86□□□□□ -0.19
CLIP1-202ENST00000358808 ZNF777Q9ULD5 760 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-202ENST00000358808 UPF2Q9HAU5 1272 aaKnown RBP13.84□□□□□ -0.19
CLIP1-202ENST00000358808 NPM1P06748 294 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLIP1-202ENST00000358808 BAZ1BQ9UIG0 1483 aaKnown RBP13.79□□□□□ -0.2
CLIP1-202ENST00000358808 TULP1O00294 542 aaPredicted RBP13.76□□□□□ -0.21
CLIP1-202ENST00000358808 ZBTB7CA1YPR0 619 aa13.75□□□□□ -0.21
CLIP1-202ENST00000358808 ERCC6Q03468 1493 aa13.74□□□□□ -0.21
CLIP1-202ENST00000358808 ARXQ96QS3 562 aa13.74□□□□□ -0.21
CLIP1-202ENST00000358808 PLEKHG5O94827 1062 aa13.74□□□□□ -0.21
CLIP1-202ENST00000358808 GLIPR1L2Q4G1C9 344 aa13.73□□□□□ -0.21
CLIP1-202ENST00000358808 ACIN1Q9UKV3 1341 aaKnown RBP13.72□□□□□ -0.21
CLIP1-202ENST00000358808 MYO15BQ96JP2 1530 aa13.71□□□□□ -0.21
CLIP1-202ENST00000358808 BAZ1AQ9NRL2 1556 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-202ENST00000358808 SALL2Q9Y467 1007 aaPredicted RBP13.66□□□□□ -0.22
CLIP1-202ENST00000358808 C14orf37Q86TY3 774 aa13.65□□□□□ -0.22
CLIP1-202ENST00000358808 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-202ENST00000358808 MYH16Q9H6N6 1097 aa13.63□□□□□ -0.23
CLIP1-202ENST00000358808 HAP1P54257 671 aaPredicted RBP13.62□□□□□ -0.23
CLIP1-202ENST00000358808 NCBP3Q53F19 620 aaKnown RBP13.59□□□□□ -0.23
CLIP1-202ENST00000358808 CSRNP3Q8WYN3 585 aa13.59□□□□□ -0.23
CLIP1-202ENST00000358808 SMARCA2P51531 1590 aa13.58□□□□□ -0.24
CLIP1-202ENST00000358808 NCLP19338 710 aaKnown RBP13.57□□□□□ -0.24
CLIP1-202ENST00000358808 WDR43Q15061 677 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLIP1-202ENST00000358808 RSF1Q96T23 1441 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-202ENST00000358808 FAM9BQ8IZU0 186 aa13.57□□□□□ -0.24
CLIP1-202ENST00000358808 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.57□□□□□ -0.242e-7■■□□□ 13.3
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms