RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 CUX2O14529 1486 aa13.6□□□□□ -0.23
SMG6-202ENST00000354901 KIF21AQ7Z4S6 1674 aa13.6□□□□□ -0.23
SMG6-202ENST00000354901 POLA1P09884 1462 aaPredicted RBP13.59□□□□□ -0.23
SMG6-202ENST00000354901 URB2Q14146 1524 aaKnown RBP13.58□□□□□ -0.23
SMG6-202ENST00000354901 WDR97A6NE52 1622 aa13.58□□□□□ -0.24
SMG6-202ENST00000354901 ARAP1Q96P48 1450 aa13.57□□□□□ -0.24
SMG6-202ENST00000354901 ATP1B4Q9UN42 357 aaPredicted RBP13.57□□□□□ -0.24
SMG6-202ENST00000354901 CUL7Q14999 1698 aa13.55□□□□□ -0.24
SMG6-202ENST00000354901 P3H3Q8IVL6 736 aa13.55□□□□□ -0.24
SMG6-202ENST00000354901 IGF1RP08069 1367 aa13.53□□□□□ -0.24
SMG6-202ENST00000354901 MRC2Q9UBG0 1479 aa13.53□□□□□ -0.24
SMG6-202ENST00000354901 DHX57Q6P158 1386 aaKnown RBP13.51□□□□□ -0.25
SMG6-202ENST00000354901 ABCA5Q8WWZ7 1642 aa13.5□□□□□ -0.25
SMG6-202ENST00000354901 DNAJC5BQ9UF47 199 aa13.49□□□□□ -0.25
SMG6-202ENST00000354901 CARMIL1Q5VZK9 1371 aa13.48□□□□□ -0.25
SMG6-202ENST00000354901 RAD54L2Q9Y4B4 1467 aa13.48□□□□□ -0.25
SMG6-202ENST00000354901 WDR62O43379 1518 aa13.47□□□□□ -0.25
SMG6-202ENST00000354901 ARHGAP35Q9NRY4 1499 aa13.47□□□□□ -0.25
SMG6-202ENST00000354901 TARBP1Q13395 1621 aaKnown RBP13.47□□□□□ -0.25
SMG6-202ENST00000354901 FAM50AQ14320 339 aaKnown RBP13.45□□□□□ -0.26
SMG6-202ENST00000354901 CCNB3Q8WWL7 1395 aa13.45□□□□□ -0.26
SMG6-202ENST00000354901 ANO8Q9HCE9 1232 aaPredicted RBP13.44□□□□□ -0.26
SMG6-202ENST00000354901 GAPVD1Q14C86 1478 aa13.42□□□□□ -0.26
SMG6-202ENST00000354901 IFT140Q96RY7 1462 aa13.41□□□□□ -0.26
SMG6-202ENST00000354901 RRBP1Q9P2E9 1410 aaKnown RBP13.39□□□□□ -0.27
SMG6-202ENST00000354901 CTTNBP2Q8WZ74 1663 aa13.39□□□□□ -0.27
SMG6-202ENST00000354901 FKBP8Q14318 412 aa13.39□□□□□ -0.27
SMG6-202ENST00000354901 CLSPNQ9HAW4 1339 aa13.38□□□□□ -0.27
SMG6-202ENST00000354901 PBRM1Q86U86 1689 aa13.38□□□□□ -0.27
SMG6-202ENST00000354901 CCDC136Q96JN2 1154 aa13.38□□□□□ -0.27
SMG6-202ENST00000354901 RBM19Q9Y4C8 960 aaKnown RBP13.37□□□□□ -0.27
SMG6-202ENST00000354901 THOC2Q8NI27 1593 aaKnown RBP13.37□□□□□ -0.27
SMG6-202ENST00000354901 EFCAB5A4FU69 1503 aa13.37□□□□□ -0.27
SMG6-202ENST00000354901 ERCC6Q03468 1493 aa13.36□□□□□ -0.27
SMG6-202ENST00000354901 RAB3GAP2Q9H2M9 1393 aa13.36□□□□□ -0.27
SMG6-202ENST00000354901 SIN3AQ96ST3 1273 aa13.35□□□□□ -0.27
SMG6-202ENST00000354901 GRIN2BQ13224 1484 aa13.32□□□□□ -0.28
SMG6-202ENST00000354901 PHLDB1Q86UU1 1377 aa13.32□□□□□ -0.28
SMG6-202ENST00000354901 TDRD9Q8NDG6 1382 aaKnown RBP13.32□□□□□ -0.28
SMG6-202ENST00000354901 MAP3K1Q13233 1512 aa13.31□□□□□ -0.28
SMG6-202ENST00000354901 FHAD1B1AJZ9 1412 aa13.31□□□□□ -0.28
SMG6-202ENST00000354901 HIRIP3Q9BW71 556 aaPredicted RBP13.31□□□□□ -0.28
SMG6-202ENST00000354901 FHOD3Q2V2M9 1422 aa13.31□□□□□ -0.28
SMG6-202ENST00000354901 ADAMTS12P58397 1594 aa13.3□□□□□ -0.28
SMG6-202ENST00000354901 KCNH8Q96L42 1107 aa13.29□□□□□ -0.28
SMG6-202ENST00000354901 TIAM1Q13009 1591 aa13.28□□□□□ -0.28
SMG6-202ENST00000354901 NEFLP07196 543 aa13.27□□□□□ -0.28
SMG6-202ENST00000354901 LRRC9Q6ZRR7 1453 aa13.27□□□□□ -0.29
SMG6-202ENST00000354901 SETD5Q9C0A6 1442 aa13.26□□□□□ -0.29
SMG6-202ENST00000354901 MSH5O43196 834 aa13.26□□□□□ -0.29
SMG6-202ENST00000354901 DDX10Q13206 875 aaKnown RBP13.26□□□□□ -0.29
SMG6-202ENST00000354901 AQRO60306 1485 aaKnown RBP eCLIP13.26□□□□□ -0.293e-6■■■■□ 24
SMG6-202ENST00000354901 RTN4Q9NQC3 1192 aaKnown RBP13.26□□□□□ -0.29
SMG6-202ENST00000354901 DEKP35659 375 aaKnown RBP13.25□□□□□ -0.29
SMG6-202ENST00000354901 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.25□□□□□ -0.29
SMG6-202ENST00000354901 SAMD9Q5K651 1589 aa13.24□□□□□ -0.29
SMG6-202ENST00000354901 SALL2Q9Y467 1007 aaPredicted RBP13.24□□□□□ -0.29
SMG6-202ENST00000354901 EIF4G3O43432 1585 aaKnown RBP13.24□□□□□ -0.29
SMG6-202ENST00000354901 SLC24A1O60721 1099 aa13.23□□□□□ -0.29
SMG6-202ENST00000354901 NBR1Q14596 966 aa13.23□□□□□ -0.29
SMG6-202ENST00000354901 MAGI1Q96QZ7 1491 aaPredicted RBP13.22□□□□□ -0.29
SMG6-202ENST00000354901 PCF11O94913 1555 aaKnown RBP13.21□□□□□ -0.29
SMG6-202ENST00000354901 MAPKBP1O60336 1514 aa13.21□□□□□ -0.29
SMG6-202ENST00000354901 FYCO1Q9BQS8 1478 aa13.2□□□□□ -0.3
SMG6-202ENST00000354901 FMN1Q68DA7 1419 aa13.2□□□□□ -0.3
SMG6-202ENST00000354901 CFAP43Q8NDM7 1665 aa13.2□□□□□ -0.3
SMG6-202ENST00000354901 ARID3CA6NKF2 412 aa13.19□□□□□ -0.3
SMG6-202ENST00000354901 ZNF608Q9ULD9 1512 aaPredicted RBP13.19□□□□□ -0.3
SMG6-202ENST00000354901 IQGAP2Q13576 1575 aa13.18□□□□□ -0.3
SMG6-202ENST00000354901 CASKIN1Q8WXD9 1431 aa13.17□□□□□ -0.3
SMG6-202ENST00000354901 MTUS2Q5JR59 1369 aa13.17□□□□□ -0.3
SMG6-202ENST00000354901 SNAPC4Q5SXM2 1469 aa13.16□□□□□ -0.3
SMG6-202ENST00000354901 UGGT2Q9NYU1 1516 aa13.15□□□□□ -0.3
SMG6-202ENST00000354901 IRX6P78412 446 aaPredicted RBP13.15□□□□□ -0.3
SMG6-202ENST00000354901 SYNJ2O15056 1496 aa13.14□□□□□ -0.31
SMG6-202ENST00000354901 GRIN2AQ12879 1464 aa13.14□□□□□ -0.31
SMG6-202ENST00000354901 KIAA0586Q9BVV6 1533 aa13.14□□□□□ -0.31
SMG6-202ENST00000354901 CHIC2Q9UKJ5 165 aa13.13□□□□□ -0.31
SMG6-202ENST00000354901 TRIM52Q96A61 297 aa13.12□□□□□ -0.31
SMG6-202ENST00000354901 PPP1R15AO75807 674 aaPredicted RBP13.1□□□□□ -0.31
SMG6-202ENST00000354901 RRP7BPQ9NSQ0 103 aa13.1□□□□□ -0.31
SMG6-202ENST00000354901 TONSLQ96HA7 1378 aa13.09□□□□□ -0.31
SMG6-202ENST00000354901 FGD6Q6ZV73 1430 aa13.08□□□□□ -0.32
SMG6-202ENST00000354901 CCDC18Q5T9S5 1454 aa13.07□□□□□ -0.32
SMG6-202ENST00000354901 EIF5BO60841 1220 aaKnown RBP13.07□□□□□ -0.32
SMG6-202ENST00000354901 HECW1Q76N89 1606 aa13.06□□□□□ -0.32
SMG6-202ENST00000354901 NUP160Q12769 1436 aa13.06□□□□□ -0.32
SMG6-202ENST00000354901 PTPRKQ15262 1439 aa13.06□□□□□ -0.32
SMG6-202ENST00000354901 ANP32CO43423 234 aa13.05□□□□□ -0.32
SMG6-202ENST00000354901 KIAA0556O60303 1618 aa13.05□□□□□ -0.32
SMG6-202ENST00000354901 CDK11AQ9UQ88 783 aaPredicted RBP13.04□□□□□ -0.32
SMG6-202ENST00000354901 IL27Q8NEV9 243 aa13.03□□□□□ -0.32
SMG6-202ENST00000354901 CEP170Q5SW79 1584 aa13.03□□□□□ -0.32
SMG6-202ENST00000354901 CHMP7Q8WUX9 453 aaPredicted RBP13.01□□□□□ -0.33
SMG6-202ENST00000354901 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.01□□□□□ -0.33
SMG6-202ENST00000354901 NCOA2Q15596 1464 aa13.01□□□□□ -0.33
SMG6-202ENST00000354901 EHBP1L1Q8N3D4 1523 aa13.01□□□□□ -0.33
SMG6-202ENST00000354901 TIMELESSQ9UNS1 1208 aa13□□□□□ -0.33
SMG6-202ENST00000354901 DISP1Q96F81 1524 aa13□□□□□ -0.33
SMG6-202ENST00000354901 FOXD1Q16676 465 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms