RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 NISCHQ9Y2I1 1504 aa19.23■□□□□ 0.67
SMG6-202ENST00000354901 CCDC180Q9P1Z9 1646 aa16.83■□□□□ 0.28
SMG6-202ENST00000354901 SHROOM4Q9ULL8 1493 aa16.4■□□□□ 0.22
SMG6-202ENST00000354901 ZCCHC6Q5VYS8 1495 aaKnown RBP16.21■□□□□ 0.18
SMG6-202ENST00000354901 SUPT5HO00267 1087 aaKnown RBP16.12■□□□□ 0.17
SMG6-202ENST00000354901 DCAF1Q9Y4B6 1507 aa16.03■□□□□ 0.16
SMG6-202ENST00000354901 DCAF8L2P0C7V8 631 aa16.02■□□□□ 0.15
SMG6-202ENST00000354901 MYO15BQ96JP2 1530 aa15.82■□□□□ 0.12
SMG6-202ENST00000354901 NACADO15069 1562 aa15.61■□□□□ 0.09
SMG6-202ENST00000354901 PPARGC1BQ86YN6 1023 aaKnown RBP15.59■□□□□ 0.09
SMG6-202ENST00000354901 HRCP23327 699 aa15.57■□□□□ 0.08
SMG6-202ENST00000354901 ABCC9O60706 1549 aa15.53■□□□□ 0.08
SMG6-202ENST00000354901 CHIC1Q5VXU3 224 aa15.51■□□□□ 0.07
SMG6-202ENST00000354901 PELP1Q8IZL8 1130 aaKnown RBP15.49■□□□□ 0.07
SMG6-202ENST00000354901 RB1CC1Q8TDY2 1594 aa15.41■□□□□ 0.06
SMG6-202ENST00000354901 PCGF6Q9BYE7 350 aa15.38■□□□□ 0.05
SMG6-202ENST00000354901 SCRIBQ14160 1630 aa15.3■□□□□ 0.04
SMG6-202ENST00000354901 LOC105371045A0A1W2PR82 267 aa15.2■□□□□ 0.02
SMG6-202ENST00000354901 SCAF1Q9H7N4 1312 aaKnown RBP15.07■□□□□ 0
SMG6-202ENST00000354901 MYT1Q01538 1121 aa15.05■□□□□ -0
SMG6-202ENST00000354901 UNC13AQ9UPW8 1703 aa15.04■□□□□ -0
SMG6-202ENST00000354901 EHMT2Q96KQ7 1210 aa14.98□□□□□ -0.01
SMG6-202ENST00000354901 FAM9AQ8IZU1 332 aaPredicted RBP14.97□□□□□ -0.01
SMG6-202ENST00000354901 RSF1Q96T23 1441 aaPredicted RBP14.93□□□□□ -0.02
SMG6-202ENST00000354901 TRIM41Q8WV44 630 aa14.9□□□□□ -0.02
SMG6-202ENST00000354901 BAZ1AQ9NRL2 1556 aaPredicted RBP14.88□□□□□ -0.03
SMG6-202ENST00000354901 BICRAQ9NZM4 1560 aa14.86□□□□□ -0.03
SMG6-202ENST00000354901 CECR2Q9BXF3 1484 aa14.82□□□□□ -0.04
SMG6-202ENST00000354901 MROH2BQ7Z745 1585 aa14.79□□□□□ -0.04
SMG6-202ENST00000354901 SMARCA4P51532 1647 aa14.76□□□□□ -0.05
SMG6-202ENST00000354901 TRIM26Q12899 539 aaPredicted RBP14.76□□□□□ -0.05
SMG6-202ENST00000354901 WIZO95785 1651 aa14.68□□□□□ -0.06
SMG6-202ENST00000354901 PEG3Q9GZU2 1588 aa14.65□□□□□ -0.06
SMG6-202ENST00000354901 TOP2AP11388 1531 aaKnown RBP14.64□□□□□ -0.07
SMG6-202ENST00000354901 PABPN1Q86U42 306 aaKnown RBP eCLIP14.6□□□□□ -0.07
SMG6-202ENST00000354901 GTF3C3Q9Y5Q9 886 aa14.6□□□□□ -0.07
SMG6-202ENST00000354901 NEUROD1Q13562 356 aa14.57□□□□□ -0.08
SMG6-202ENST00000354901 SMARCA2P51531 1590 aa14.53□□□□□ -0.08
SMG6-202ENST00000354901 ACIN1Q9UKV3 1341 aaKnown RBP14.52□□□□□ -0.09
SMG6-202ENST00000354901 TTBK1Q5TCY1 1321 aaPredicted RBP14.48□□□□□ -0.09
SMG6-202ENST00000354901 ATAD2BQ9ULI0 1458 aa14.45□□□□□ -0.1
SMG6-202ENST00000354901 EIF4G1Q04637 1599 aaKnown RBP14.43□□□□□ -0.1
SMG6-202ENST00000354901 CCDC88BA6NC98 1476 aa14.41□□□□□ -0.1
SMG6-202ENST00000354901 HMGXB3Q12766 1538 aa14.39□□□□□ -0.11
SMG6-202ENST00000354901 ZEB1P37275 1124 aaPredicted RBP14.39□□□□□ -0.11
SMG6-202ENST00000354901 BAZ1BQ9UIG0 1483 aaKnown RBP14.39□□□□□ -0.11
SMG6-202ENST00000354901 CENPBP07199 599 aaPredicted RBP14.37□□□□□ -0.11
SMG6-202ENST00000354901 YTHDC1Q96MU7 727 aaKnown RBP14.36□□□□□ -0.11
SMG6-202ENST00000354901 NCAPD3P42695 1498 aa14.35□□□□□ -0.11
SMG6-202ENST00000354901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.33□□□□□ -0.12
SMG6-202ENST00000354901 ABCC8Q09428 1581 aa14.33□□□□□ -0.12
SMG6-202ENST00000354901 CCER1Q8TC90 406 aaPredicted RBP14.27□□□□□ -0.13
SMG6-202ENST00000354901 BCL11AQ9H165 835 aa14.27□□□□□ -0.13
SMG6-202ENST00000354901 UBTFP17480 764 aaKnown RBP14.25□□□□□ -0.13
SMG6-202ENST00000354901 SOGA1O94964 1423 aa14.22□□□□□ -0.13
SMG6-202ENST00000354901 DIEXFQ68CQ4 756 aaKnown RBP14.16□□□□□ -0.14
SMG6-202ENST00000354901 RUSC2Q8N2Y8 1516 aa14.16□□□□□ -0.14
SMG6-202ENST00000354901 CSRNP3Q8WYN3 585 aa14.16□□□□□ -0.14
SMG6-202ENST00000354901 RANGAP1P46060 587 aaPredicted RBP14.15□□□□□ -0.14
SMG6-202ENST00000354901 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
SMG6-202ENST00000354901 CEP162Q5TB80 1403 aa14.14□□□□□ -0.15
SMG6-202ENST00000354901 PRDM2Q13029 1718 aa14.1□□□□□ -0.15
SMG6-202ENST00000354901 EEA1Q15075 1411 aa14.07□□□□□ -0.16
SMG6-202ENST00000354901 WRNQ14191 1432 aaPredicted RBP eCLIP14.06□□□□□ -0.161e-6■■■■■ 58.5
SMG6-202ENST00000354901 CFTRP13569 1480 aa14.05□□□□□ -0.16
SMG6-202ENST00000354901 TNIKQ9UKE5 1360 aa14.04□□□□□ -0.16
SMG6-202ENST00000354901 HNRNPUL2Q1KMD3 747 aaKnown RBP14.01□□□□□ -0.17
SMG6-202ENST00000354901 PRKCSHP14314 528 aaPredicted RBP14□□□□□ -0.17
SMG6-202ENST00000354901 BIVM-ERCC5R4GMW8 1640 aa14□□□□□ -0.17
SMG6-202ENST00000354901 TOP2BQ02880 1626 aa13.99□□□□□ -0.17
SMG6-202ENST00000354901 SYNJ1O43426 1573 aa13.98□□□□□ -0.17
SMG6-202ENST00000354901 GOLGA3Q08378 1498 aa13.96□□□□□ -0.17
SMG6-202ENST00000354901 CADPSQ9ULU8 1353 aa13.95□□□□□ -0.18
SMG6-202ENST00000354901 APLP2Q06481 763 aa13.91□□□□□ -0.18
SMG6-202ENST00000354901 ANP32EQ9BTT0 268 aa13.91□□□□□ -0.18
SMG6-202ENST00000354901 CLIP1P30622 1438 aa13.88□□□□□ -0.19
SMG6-202ENST00000354901 LAMC3Q9Y6N6 1575 aa13.87□□□□□ -0.19
SMG6-202ENST00000354901 CEP164Q9UPV0 1460 aa13.86□□□□□ -0.19
SMG6-202ENST00000354901 CUX1P39880 1505 aa13.85□□□□□ -0.19
SMG6-202ENST00000354901 KIF21BO75037 1637 aa13.84□□□□□ -0.19
SMG6-202ENST00000354901 RAPGEF2Q9Y4G8 1499 aa13.83□□□□□ -0.19
SMG6-202ENST00000354901 ZNF316A6NFI3 1004 aaPredicted RBP13.79□□□□□ -0.2
SMG6-202ENST00000354901 FANCD2Q9BXW9 1451 aa13.79□□□□□ -0.2
SMG6-202ENST00000354901 ERICH6Q7L0X2 663 aa13.77□□□□□ -0.2
SMG6-202ENST00000354901 MIER1Q8N108 512 aa13.77□□□□□ -0.21
SMG6-202ENST00000354901 VPS8Q8N3P4 1428 aa13.76□□□□□ -0.21
SMG6-202ENST00000354901 DNMBPQ6XZF7 1577 aa13.75□□□□□ -0.21
SMG6-202ENST00000354901 BCANQ96GW7 911 aa13.74□□□□□ -0.21
SMG6-202ENST00000354901 ERICH3Q5RHP9 1530 aa13.73□□□□□ -0.21
SMG6-202ENST00000354901 KIF27Q86VH2 1401 aa13.73□□□□□ -0.21
SMG6-202ENST00000354901 PDS5BQ9NTI5 1447 aa13.72□□□□□ -0.21
SMG6-202ENST00000354901 TSHZ2Q9NRE2 1034 aa13.7□□□□□ -0.22
SMG6-202ENST00000354901 ITGAEP38570 1179 aa13.69□□□□□ -0.22
SMG6-202ENST00000354901 KANK4Q5T7N3 995 aaPredicted RBP13.68□□□□□ -0.22
SMG6-202ENST00000354901 FGD5Q6ZNL6 1462 aa13.67□□□□□ -0.22
SMG6-202ENST00000354901 PRXQ9BXM0 1461 aa13.67□□□□□ -0.22
SMG6-202ENST00000354901 NESP48681 1621 aa13.67□□□□□ -0.22
SMG6-202ENST00000354901 TOPBP1Q92547 1522 aa13.66□□□□□ -0.22
SMG6-202ENST00000354901 SUPT16HQ9Y5B9 1047 aaKnown RBP13.65□□□□□ -0.22
SMG6-202ENST00000354901 ABCA10Q8WWZ4 1543 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms