RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 P3H3Q8IVL6 736 aa32.24■■■□□ 2.75
SHMT1-202ENST00000352886 CTTNBP2Q8WZ74 1663 aa32.23■■■□□ 2.75
SHMT1-202ENST00000352886 LRRC9Q6ZRR7 1453 aa32.23■■■□□ 2.75
SHMT1-202ENST00000352886 SCAF1Q9H7N4 1312 aaKnown RBP32.2■■■□□ 2.75
SHMT1-202ENST00000352886 CFAP43Q8NDM7 1665 aa32.2■■■□□ 2.75
SHMT1-202ENST00000352886 PDS5BQ9NTI5 1447 aa32.19■■■□□ 2.74
SHMT1-202ENST00000352886 EFCAB5A4FU69 1503 aa32.19■■■□□ 2.74
SHMT1-202ENST00000352886 DNAJC5BQ9UF47 199 aa32.18■■■□□ 2.74
SHMT1-202ENST00000352886 FHOD3Q2V2M9 1422 aa32.17■■■□□ 2.74
SHMT1-202ENST00000352886 PELP1Q8IZL8 1130 aaKnown RBP32.17■■■□□ 2.74
SHMT1-202ENST00000352886 ITGAEP38570 1179 aa32.15■■■□□ 2.74
SHMT1-202ENST00000352886 ABCA5Q8WWZ7 1642 aa32.15■■■□□ 2.74
SHMT1-202ENST00000352886 KIF21AQ7Z4S6 1674 aa32.14■■■□□ 2.74
SHMT1-202ENST00000352886 TDRD9Q8NDG6 1382 aaKnown RBP32.11■■■□□ 2.73
SHMT1-202ENST00000352886 FYCO1Q9BQS8 1478 aa32.09■■■□□ 2.73
SHMT1-202ENST00000352886 PHLDB1Q86UU1 1377 aa32.08■■■□□ 2.73
SHMT1-202ENST00000352886 ATP1B4Q9UN42 357 aaPredicted RBP32.08■■■□□ 2.73
SHMT1-202ENST00000352886 GAPVD1Q14C86 1478 aa32.07■■■□□ 2.72
SHMT1-202ENST00000352886 ACIN1Q9UKV3 1341 aaKnown RBP32.07■■■□□ 2.72
SHMT1-202ENST00000352886 CASKIN1Q8WXD9 1431 aa32.04■■■□□ 2.72
SHMT1-202ENST00000352886 NEUROD1Q13562 356 aa32.03■■■□□ 2.72
SHMT1-202ENST00000352886 AQRO60306 1485 aaKnown RBP eCLIP32.03■■■□□ 2.72
SHMT1-202ENST00000352886 RAB3GAP2Q9H2M9 1393 aa31.99■■■□□ 2.71
SHMT1-202ENST00000352886 CENPBP07199 599 aaPredicted RBP31.98■■■□□ 2.71
SHMT1-202ENST00000352886 FMN1Q68DA7 1419 aa31.96■■■□□ 2.71
SHMT1-202ENST00000352886 TARBP1Q13395 1621 aaKnown RBP31.94■■■□□ 2.7
SHMT1-202ENST00000352886 FAM50AQ14320 339 aaKnown RBP31.93■■■□□ 2.7
SHMT1-202ENST00000352886 SAMD9Q5K651 1589 aa31.92■■■□□ 2.7
SHMT1-202ENST00000352886 SNAPC4Q5SXM2 1469 aa31.9■■■□□ 2.7
SHMT1-202ENST00000352886 SETD5Q9C0A6 1442 aa31.89■■■□□ 2.7
SHMT1-202ENST00000352886 MIER1Q8N108 512 aa31.89■■■□□ 2.7
SHMT1-202ENST00000352886 MAPKBP1O60336 1514 aa31.83■■■□□ 2.69
SHMT1-202ENST00000352886 PBRM1Q86U86 1689 aa31.81■■■□□ 2.68
SHMT1-202ENST00000352886 LRRIQ1Q96JM4 1722 aa31.79■■■□□ 2.68
SHMT1-202ENST00000352886 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.75■■■□□ 2.67
SHMT1-202ENST00000352886 MTUS2Q5JR59 1369 aa31.74■■■□□ 2.67
SHMT1-202ENST00000352886 GRIN2BQ13224 1484 aa31.73■■■□□ 2.67
SHMT1-202ENST00000352886 MRC2Q9UBG0 1479 aa31.72■■■□□ 2.67
SHMT1-202ENST00000352886 YTHDC1Q96MU7 727 aaKnown RBP31.71■■■□□ 2.67
SHMT1-202ENST00000352886 FGD6Q6ZV73 1430 aa31.7■■■□□ 2.67
SHMT1-202ENST00000352886 THOC2Q8NI27 1593 aaKnown RBP31.69■■■□□ 2.66
SHMT1-202ENST00000352886 GTF3C3Q9Y5Q9 886 aa31.66■■■□□ 2.66
SHMT1-202ENST00000352886 ADAMTS12P58397 1594 aa31.65■■■□□ 2.66
SHMT1-202ENST00000352886 IQGAP2Q13576 1575 aa31.6■■■□□ 2.65
SHMT1-202ENST00000352886 NCOA2Q15596 1464 aa31.6■■■□□ 2.65
SHMT1-202ENST00000352886 SUPT6HQ7KZ85 1726 aaKnown RBP31.59■■■□□ 2.65
SHMT1-202ENST00000352886 EHBP1L1Q8N3D4 1523 aa31.58■■■□□ 2.65
SHMT1-202ENST00000352886 MYOM3Q5VTT5 1437 aa31.54■■■□□ 2.64
SHMT1-202ENST00000352886 SIN3AQ96ST3 1273 aa31.53■■■□□ 2.64
SHMT1-202ENST00000352886 CCDC18Q5T9S5 1454 aa31.52■■■□□ 2.64
SHMT1-202ENST00000352886 IFT140Q96RY7 1462 aa31.5■■■□□ 2.63
SHMT1-202ENST00000352886 HECW1Q76N89 1606 aa31.5■■■□□ 2.63
SHMT1-202ENST00000352886 MAGI3Q5TCQ9 1506 aa31.5■■■□□ 2.63
SHMT1-202ENST00000352886 ZNF608Q9ULD9 1512 aaPredicted RBP31.49■■■□□ 2.63
SHMT1-202ENST00000352886 WDR62O43379 1518 aa31.49■■■□□ 2.63
SHMT1-202ENST00000352886 PTPRKQ15262 1439 aa31.49■■■□□ 2.63
SHMT1-202ENST00000352886 UGGT2Q9NYU1 1516 aa31.47■■■□□ 2.63
SHMT1-202ENST00000352886 HFM1A2PYH4 1435 aa31.45■■■□□ 2.62
SHMT1-202ENST00000352886 ARHGEF11O15085 1522 aa31.45■■■□□ 2.62
SHMT1-202ENST00000352886 PTPN23Q9H3S7 1636 aa31.43■■■□□ 2.62
SHMT1-202ENST00000352886 EPRSP07814 1512 aaKnown RBP31.4■■■□□ 2.62
SHMT1-202ENST00000352886 TIMELESSQ9UNS1 1208 aa31.38■■■□□ 2.61
SHMT1-202ENST00000352886 NAIPQ13075 1403 aa31.35■■■□□ 2.61
SHMT1-202ENST00000352886 CDK13Q14004 1512 aaKnown RBP31.34■■■□□ 2.61
SHMT1-202ENST00000352886 UACAQ9BZF9 1416 aa31.34■■■□□ 2.61
SHMT1-202ENST00000352886 EIF4G3O43432 1585 aaKnown RBP31.32■■■□□ 2.6
SHMT1-202ENST00000352886 KIAA0586Q9BVV6 1533 aa31.3■■■□□ 2.6
SHMT1-202ENST00000352886 TCOF1Q13428 1488 aaKnown RBP31.29■■■□□ 2.6
SHMT1-202ENST00000352886 KIAA0556O60303 1618 aa31.27■■■□□ 2.6
SHMT1-202ENST00000352886 ARID3CA6NKF2 412 aa31.25■■■□□ 2.59
SHMT1-202ENST00000352886 ERCC6Q03468 1493 aa31.25■■■□□ 2.59
SHMT1-202ENST00000352886 GRIN2AQ12879 1464 aa31.25■■■□□ 2.59
SHMT1-202ENST00000352886 DISP1Q96F81 1524 aa31.25■■■□□ 2.59
SHMT1-202ENST00000352886 PPP1R15AO75807 674 aaPredicted RBP31.24■■■□□ 2.59
SHMT1-202ENST00000352886 GCC2Q8IWJ2 1684 aa31.19■■■□□ 2.58
SHMT1-202ENST00000352886 MIA2Q96PC5 1412 aa31.18■■■□□ 2.58
SHMT1-202ENST00000352886 TONSLQ96HA7 1378 aa31.18■■■□□ 2.58
SHMT1-202ENST00000352886 RRP7BPQ9NSQ0 103 aa31.17■■■□□ 2.58
SHMT1-202ENST00000352886 CHIC2Q9UKJ5 165 aa31.17■■■□□ 2.58
SHMT1-202ENST00000352886 RAPGEF6Q8TEU7 1601 aa31.13■■■□□ 2.57
SHMT1-202ENST00000352886 MAGI1Q96QZ7 1491 aaPredicted RBP31.12■■■□□ 2.57
SHMT1-202ENST00000352886 NUP153P49790 1475 aaKnown RBP31.11■■■□□ 2.57
SHMT1-202ENST00000352886 AKNAQ7Z591 1439 aa31.11■■■□□ 2.57
SHMT1-202ENST00000352886 DDX10Q13206 875 aaKnown RBP31.08■■■□□ 2.57
SHMT1-202ENST00000352886 KDM6BO15054 1643 aa31.06■■■□□ 2.56
SHMT1-202ENST00000352886 CEP170Q5SW79 1584 aa31.06■■■□□ 2.56
SHMT1-202ENST00000352886 CHMP7Q8WUX9 453 aaPredicted RBP31.05■■■□□ 2.56
SHMT1-202ENST00000352886 SYNJ2O15056 1496 aa31.05■■■□□ 2.56
SHMT1-202ENST00000352886 HIRIP3Q9BW71 556 aaPredicted RBP31.05■■■□□ 2.56
SHMT1-202ENST00000352886 TRIM52Q96A61 297 aa31■■■□□ 2.55
SHMT1-202ENST00000352886 DENND4BO75064 1496 aaPredicted RBP30.99■■■□□ 2.55
SHMT1-202ENST00000352886 CDK11AQ9UQ88 783 aaPredicted RBP30.98■■■□□ 2.55
SHMT1-202ENST00000352886 FBLN2P98095 1184 aa30.97■■■□□ 2.55
SHMT1-202ENST00000352886 DAPK1P53355 1430 aa30.96■■■□□ 2.55
SHMT1-202ENST00000352886 KDM5BQ9UGL1 1544 aa30.96■■■□□ 2.55
SHMT1-202ENST00000352886 KCNH8Q96L42 1107 aa30.95■■■□□ 2.55
SHMT1-202ENST00000352886 DNMT1P26358 1616 aaKnown RBP30.95■■■□□ 2.55
SHMT1-202ENST00000352886 PLB1Q6P1J6 1458 aa30.92■■■□□ 2.54
SHMT1-202ENST00000352886 MYT1Q01538 1121 aa30.91■■■□□ 2.54
SHMT1-202ENST00000352886 ABCC5O15440 1437 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms