RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 DHX57Q6P158 1386 aaKnown RBP28.72■■■□□ 2.19
COL9A3-201ENST00000343916 FHOD3Q2V2M9 1422 aa28.7■■■□□ 2.19
COL9A3-201ENST00000343916 CUL7Q14999 1698 aa28.7■■■□□ 2.18
COL9A3-201ENST00000343916 ATP1B4Q9UN42 357 aaPredicted RBP28.7■■■□□ 2.18
COL9A3-201ENST00000343916 FHAD1B1AJZ9 1412 aa28.69■■■□□ 2.18
COL9A3-201ENST00000343916 WDR97A6NE52 1622 aa28.68■■■□□ 2.18
COL9A3-201ENST00000343916 MAP3K1Q13233 1512 aa28.68■■■□□ 2.18
COL9A3-201ENST00000343916 PCF11O94913 1555 aaKnown RBP28.67■■■□□ 2.18
COL9A3-201ENST00000343916 LRRC9Q6ZRR7 1453 aa28.67■■■□□ 2.18
COL9A3-201ENST00000343916 CTTNBP2Q8WZ74 1663 aa28.6■■■□□ 2.17
COL9A3-201ENST00000343916 ABCA5Q8WWZ7 1642 aa28.6■■■□□ 2.17
COL9A3-201ENST00000343916 PHLDB1Q86UU1 1377 aa28.59■■■□□ 2.17
COL9A3-201ENST00000343916 GAPVD1Q14C86 1478 aa28.59■■■□□ 2.17
COL9A3-201ENST00000343916 CLSPNQ9HAW4 1339 aa28.58■■■□□ 2.17
COL9A3-201ENST00000343916 PELP1Q8IZL8 1130 aaKnown RBP28.58■■■□□ 2.17
COL9A3-201ENST00000343916 EFCAB5A4FU69 1503 aa28.56■■■□□ 2.16
COL9A3-201ENST00000343916 MRC2Q9UBG0 1479 aa28.55■■■□□ 2.16
COL9A3-201ENST00000343916 CFAP43Q8NDM7 1665 aa28.55■■■□□ 2.16
COL9A3-201ENST00000343916 FYCO1Q9BQS8 1478 aa28.5■■■□□ 2.15
COL9A3-201ENST00000343916 CASKIN1Q8WXD9 1431 aa28.49■■■□□ 2.15
COL9A3-201ENST00000343916 FAM50AQ14320 339 aaKnown RBP28.49■■■□□ 2.15
COL9A3-201ENST00000343916 RAB3GAP2Q9H2M9 1393 aa28.47■■■□□ 2.15
COL9A3-201ENST00000343916 NEUROD1Q13562 356 aa28.45■■■□□ 2.14
COL9A3-201ENST00000343916 TARBP1Q13395 1621 aaKnown RBP28.44■■■□□ 2.14
COL9A3-201ENST00000343916 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.141e-6■■■□□ 16
COL9A3-201ENST00000343916 FMN1Q68DA7 1419 aa28.42■■■□□ 2.14
COL9A3-201ENST00000343916 ACIN1Q9UKV3 1341 aaKnown RBP28.41■■■□□ 2.14
COL9A3-201ENST00000343916 ERCC6Q03468 1493 aa28.41■■■□□ 2.14
COL9A3-201ENST00000343916 WDR62O43379 1518 aa28.39■■■□□ 2.14
COL9A3-201ENST00000343916 SNAPC4Q5SXM2 1469 aa28.39■■■□□ 2.13
COL9A3-201ENST00000343916 MIER1Q8N108 512 aa28.36■■■□□ 2.13
COL9A3-201ENST00000343916 SAMD9Q5K651 1589 aa28.36■■■□□ 2.13
COL9A3-201ENST00000343916 SETD5Q9C0A6 1442 aa28.35■■■□□ 2.13
COL9A3-201ENST00000343916 CENPBP07199 599 aaPredicted RBP28.3■■■□□ 2.12
COL9A3-201ENST00000343916 MAPKBP1O60336 1514 aa28.28■■■□□ 2.12
COL9A3-201ENST00000343916 THOC2Q8NI27 1593 aaKnown RBP28.28■■■□□ 2.12
COL9A3-201ENST00000343916 MTUS2Q5JR59 1369 aa28.27■■■□□ 2.12
COL9A3-201ENST00000343916 PBRM1Q86U86 1689 aa28.27■■■□□ 2.12
COL9A3-201ENST00000343916 LRRIQ1Q96JM4 1722 aa28.26■■■□□ 2.11
COL9A3-201ENST00000343916 YTHDC1Q96MU7 727 aaKnown RBP28.25■■■□□ 2.11
COL9A3-201ENST00000343916 GRIN2BQ13224 1484 aa28.22■■■□□ 2.11
COL9A3-201ENST00000343916 IFT140Q96RY7 1462 aa28.22■■■□□ 2.11
COL9A3-201ENST00000343916 FGD6Q6ZV73 1430 aa28.21■■■□□ 2.11
COL9A3-201ENST00000343916 ZNF608Q9ULD9 1512 aaPredicted RBP28.2■■■□□ 2.1
COL9A3-201ENST00000343916 ADAMTS12P58397 1594 aa28.17■■■□□ 2.1
COL9A3-201ENST00000343916 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.16■■■□□ 2.12e-6■□□□□ 11.1
COL9A3-201ENST00000343916 GTF3C3Q9Y5Q9 886 aa28.15■■■□□ 2.1
COL9A3-201ENST00000343916 SIN3AQ96ST3 1273 aa28.13■■■□□ 2.09
COL9A3-201ENST00000343916 NCOA2Q15596 1464 aa28.13■■■□□ 2.09
COL9A3-201ENST00000343916 IQGAP2Q13576 1575 aa28.12■■■□□ 2.09
COL9A3-201ENST00000343916 PTPRKQ15262 1439 aa28.07■■■□□ 2.08
COL9A3-201ENST00000343916 MAGI3Q5TCQ9 1506 aa28.06■■■□□ 2.08
COL9A3-201ENST00000343916 MYOM3Q5VTT5 1437 aa28.06■■■□□ 2.08
COL9A3-201ENST00000343916 EHBP1L1Q8N3D4 1523 aa28.05■■■□□ 2.08
COL9A3-201ENST00000343916 SUPT6HQ7KZ85 1726 aaKnown RBP28.04■■■□□ 2.08
COL9A3-201ENST00000343916 ARID3CA6NKF2 412 aa28.03■■■□□ 2.08
COL9A3-201ENST00000343916 EIF4G3O43432 1585 aaKnown RBP28.02■■■□□ 2.08
COL9A3-201ENST00000343916 CCDC18Q5T9S5 1454 aa27.99■■■□□ 2.07
COL9A3-201ENST00000343916 HECW1Q76N89 1606 aa27.98■■■□□ 2.07
COL9A3-201ENST00000343916 UGGT2Q9NYU1 1516 aa27.97■■■□□ 2.07
COL9A3-201ENST00000343916 EPRSP07814 1512 aaKnown RBP27.96■■■□□ 2.07
COL9A3-201ENST00000343916 CDK13Q14004 1512 aaKnown RBP27.95■■■□□ 2.07
COL9A3-201ENST00000343916 HFM1A2PYH4 1435 aa27.95■■■□□ 2.06
COL9A3-201ENST00000343916 ARHGEF11O15085 1522 aa27.94■■■□□ 2.06
COL9A3-201ENST00000343916 PTPN23Q9H3S7 1636 aa27.93■■■□□ 2.06
COL9A3-201ENST00000343916 NAIPQ13075 1403 aa27.89■■■□□ 2.06
COL9A3-201ENST00000343916 KIAA0586Q9BVV6 1533 aa27.88■■■□□ 2.05
COL9A3-201ENST00000343916 CHIC2Q9UKJ5 165 aa27.86■■■□□ 2.05
COL9A3-201ENST00000343916 GRIN2AQ12879 1464 aa27.86■■■□□ 2.05
COL9A3-201ENST00000343916 DISP1Q96F81 1524 aa27.85■■■□□ 2.05
COL9A3-201ENST00000343916 UACAQ9BZF9 1416 aa27.84■■■□□ 2.05
COL9A3-201ENST00000343916 RRP7BPQ9NSQ0 103 aa27.83■■■□□ 2.05
COL9A3-201ENST00000343916 KIAA0556O60303 1618 aa27.82■■■□□ 2.04
COL9A3-201ENST00000343916 TIMELESSQ9UNS1 1208 aa27.82■■■□□ 2.04
COL9A3-201ENST00000343916 PPP1R15AO75807 674 aaPredicted RBP27.79■■■□□ 2.04
COL9A3-201ENST00000343916 TCOF1Q13428 1488 aaKnown RBP27.79■■■□□ 2.04
COL9A3-201ENST00000343916 MAGI1Q96QZ7 1491 aaPredicted RBP27.79■■■□□ 2.04
COL9A3-201ENST00000343916 FBLN2P98095 1184 aa27.77■■■□□ 2.04
COL9A3-201ENST00000343916 CHMP7Q8WUX9 453 aaPredicted RBP27.77■■■□□ 2.04
COL9A3-201ENST00000343916 HIRIP3Q9BW71 556 aaPredicted RBP27.75■■■□□ 2.03
COL9A3-201ENST00000343916 NUP153P49790 1475 aaKnown RBP27.73■■■□□ 2.03
COL9A3-201ENST00000343916 TONSLQ96HA7 1378 aa27.73■■■□□ 2.03
COL9A3-201ENST00000343916 SYNJ2O15056 1496 aa27.72■■■□□ 2.03
COL9A3-201ENST00000343916 MIA2Q96PC5 1412 aa27.71■■■□□ 2.03
COL9A3-201ENST00000343916 CEP170Q5SW79 1584 aa27.69■■■□□ 2.02
COL9A3-201ENST00000343916 RAPGEF6Q8TEU7 1601 aa27.68■■■□□ 2.02
COL9A3-201ENST00000343916 DDX10Q13206 875 aaKnown RBP27.68■■■□□ 2.02
COL9A3-201ENST00000343916 KDM6BO15054 1643 aa27.66■■■□□ 2.02
COL9A3-201ENST00000343916 TRIM52Q96A61 297 aa27.65■■■□□ 2.02
COL9A3-201ENST00000343916 GCC2Q8IWJ2 1684 aa27.64■■■□□ 2.01
COL9A3-201ENST00000343916 ZNF644Q9H582 1327 aaPredicted RBP27.63■■■□□ 2.01
COL9A3-201ENST00000343916 KCNH8Q96L42 1107 aa27.61■■■□□ 2.01
COL9A3-201ENST00000343916 PLB1Q6P1J6 1458 aa27.61■■■□□ 2.01
COL9A3-201ENST00000343916 DENND4BO75064 1496 aaPredicted RBP27.6■■■□□ 2.01
COL9A3-201ENST00000343916 AKNAQ7Z591 1439 aa27.59■■■□□ 2.01
COL9A3-201ENST00000343916 CDK11AQ9UQ88 783 aaPredicted RBP27.59■■■□□ 2.01
COL9A3-201ENST00000343916 PRG4Q92954 1404 aaPredicted RBP27.57■■■□□ 2
COL9A3-201ENST00000343916 JPH4Q96JJ6 628 aa27.57■■■□□ 2
COL9A3-201ENST00000343916 DAPK1P53355 1430 aa27.56■■■□□ 2
COL9A3-201ENST00000343916 NUP160Q12769 1436 aa27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms