RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 NISCHQ9Y2I1 1504 aa41.11■■■■■ 4.17
COL9A3-201ENST00000343916 CCDC180Q9P1Z9 1646 aa35.11■■■■□ 3.21
COL9A3-201ENST00000343916 SHROOM4Q9ULL8 1493 aa34.84■■■■□ 3.17
COL9A3-201ENST00000343916 ZCCHC6Q5VYS8 1495 aaKnown RBP34.71■■■■□ 3.15
COL9A3-201ENST00000343916 DCAF8L2P0C7V8 631 aa34.22■■■■□ 3.07
COL9A3-201ENST00000343916 SUPT5HO00267 1087 aaKnown RBP33.99■■■■□ 3.03
COL9A3-201ENST00000343916 DCAF1Q9Y4B6 1507 aa33.71■■■□□ 2.99
COL9A3-201ENST00000343916 ABCC9O60706 1549 aa33.25■■■□□ 2.91
COL9A3-201ENST00000343916 MYO15BQ96JP2 1530 aa32.91■■■□□ 2.86
COL9A3-201ENST00000343916 CHIC1Q5VXU3 224 aa32.87■■■□□ 2.85
COL9A3-201ENST00000343916 SCRIBQ14160 1630 aa32.87■■■□□ 2.85
COL9A3-201ENST00000343916 NACADO15069 1562 aa32.69■■■□□ 2.82
COL9A3-201ENST00000343916 RSF1Q96T23 1441 aaPredicted RBP32.41■■■□□ 2.78
COL9A3-201ENST00000343916 RB1CC1Q8TDY2 1594 aa32.37■■■□□ 2.77
COL9A3-201ENST00000343916 CECR2Q9BXF3 1484 aa32.12■■■□□ 2.73
COL9A3-201ENST00000343916 MROH2BQ7Z745 1585 aa31.96■■■□□ 2.71
COL9A3-201ENST00000343916 LOC105371045A0A1W2PR82 267 aa31.91■■■□□ 2.7
COL9A3-201ENST00000343916 UNC13AQ9UPW8 1703 aa31.81■■■□□ 2.68
COL9A3-201ENST00000343916 WIZO95785 1651 aa31.77■■■□□ 2.68
COL9A3-201ENST00000343916 TRIM41Q8WV44 630 aa31.68■■■□□ 2.66
COL9A3-201ENST00000343916 BAZ1AQ9NRL2 1556 aaPredicted RBP31.59■■■□□ 2.65
COL9A3-201ENST00000343916 PCGF6Q9BYE7 350 aa31.52■■■□□ 2.64
COL9A3-201ENST00000343916 BICRAQ9NZM4 1560 aa31.51■■■□□ 2.64
COL9A3-201ENST00000343916 PABPN1Q86U42 306 aaKnown RBP eCLIP31.48■■■□□ 2.632e-9■■■□□ 16.1
COL9A3-201ENST00000343916 FAM9AQ8IZU1 332 aaPredicted RBP31.43■■■□□ 2.62
COL9A3-201ENST00000343916 SMARCA4P51532 1647 aa31.38■■■□□ 2.61
COL9A3-201ENST00000343916 TOP2AP11388 1531 aaKnown RBP31.25■■■□□ 2.59
COL9A3-201ENST00000343916 HRCP23327 699 aa31.24■■■□□ 2.59
COL9A3-201ENST00000343916 EHMT2Q96KQ7 1210 aa31.19■■■□□ 2.58
COL9A3-201ENST00000343916 EIF4G1Q04637 1599 aaKnown RBP31.17■■■□□ 2.58
COL9A3-201ENST00000343916 CCDC88BA6NC98 1476 aa31.12■■■□□ 2.57
COL9A3-201ENST00000343916 SMARCA2P51531 1590 aa31.08■■■□□ 2.57
COL9A3-201ENST00000343916 TRIM26Q12899 539 aaPredicted RBP30.97■■■□□ 2.55
COL9A3-201ENST00000343916 ABCC8Q09428 1581 aa30.95■■■□□ 2.55
COL9A3-201ENST00000343916 PEG3Q9GZU2 1588 aa30.79■■■□□ 2.52
COL9A3-201ENST00000343916 PPARGC1BQ86YN6 1023 aaKnown RBP30.7■■■□□ 2.51
COL9A3-201ENST00000343916 ATAD2BQ9ULI0 1458 aa30.66■■■□□ 2.5
COL9A3-201ENST00000343916 SOGA1O94964 1423 aa30.59■■■□□ 2.49
COL9A3-201ENST00000343916 BAZ1BQ9UIG0 1483 aaKnown RBP30.56■■■□□ 2.48
COL9A3-201ENST00000343916 RUSC2Q8N2Y8 1516 aa30.46■■■□□ 2.47
COL9A3-201ENST00000343916 WRNQ14191 1432 aaPredicted RBP eCLIP30.46■■■□□ 2.47
COL9A3-201ENST00000343916 CSRNP3Q8WYN3 585 aa30.36■■■□□ 2.45
COL9A3-201ENST00000343916 SYNJ1O43426 1573 aa30.33■■■□□ 2.45
COL9A3-201ENST00000343916 EEA1Q15075 1411 aa30.32■■■□□ 2.44
COL9A3-201ENST00000343916 CEP162Q5TB80 1403 aa30.27■■■□□ 2.44
COL9A3-201ENST00000343916 NCAPD3P42695 1498 aa30.24■■■□□ 2.43
COL9A3-201ENST00000343916 TNIKQ9UKE5 1360 aa30.23■■■□□ 2.43
COL9A3-201ENST00000343916 UBTFP17480 764 aaKnown RBP30.23■■■□□ 2.43
COL9A3-201ENST00000343916 HMGXB3Q12766 1538 aa30.16■■■□□ 2.42
COL9A3-201ENST00000343916 GOLGA3Q08378 1498 aa30.12■■■□□ 2.41
COL9A3-201ENST00000343916 TTBK1Q5TCY1 1321 aaPredicted RBP30.09■■■□□ 2.41
COL9A3-201ENST00000343916 ZEB1P37275 1124 aaPredicted RBP30.08■■■□□ 2.41
COL9A3-201ENST00000343916 CC2D2AQ9P2K1 1620 aa30.03■■■□□ 2.4
COL9A3-201ENST00000343916 CEP164Q9UPV0 1460 aa29.99■■■□□ 2.39
COL9A3-201ENST00000343916 TOP2BQ02880 1626 aa29.97■■■□□ 2.39
COL9A3-201ENST00000343916 KIF21BO75037 1637 aa29.94■■■□□ 2.38
COL9A3-201ENST00000343916 RAPGEF2Q9Y4G8 1499 aa29.86■■■□□ 2.37
COL9A3-201ENST00000343916 BIVM-ERCC5R4GMW8 1640 aa29.85■■■□□ 2.37
COL9A3-201ENST00000343916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.85■■■□□ 2.37
COL9A3-201ENST00000343916 CFTRP13569 1480 aa29.79■■■□□ 2.36
COL9A3-201ENST00000343916 CLIP1P30622 1438 aa29.79■■■□□ 2.36
COL9A3-201ENST00000343916 CUX1P39880 1505 aa29.77■■■□□ 2.36
COL9A3-201ENST00000343916 RANGAP1P46060 587 aaPredicted RBP29.76■■■□□ 2.35
COL9A3-201ENST00000343916 CCER1Q8TC90 406 aaPredicted RBP29.71■■■□□ 2.35
COL9A3-201ENST00000343916 VPS8Q8N3P4 1428 aa29.6■■■□□ 2.33
COL9A3-201ENST00000343916 PRXQ9BXM0 1461 aa29.59■■■□□ 2.33
COL9A3-201ENST00000343916 KIF27Q86VH2 1401 aa29.54■■■□□ 2.32
COL9A3-201ENST00000343916 CADPSQ9ULU8 1353 aa29.53■■■□□ 2.32
COL9A3-201ENST00000343916 ERICH3Q5RHP9 1530 aa29.52■■■□□ 2.32
COL9A3-201ENST00000343916 PRDM2Q13029 1718 aa29.5■■■□□ 2.31
COL9A3-201ENST00000343916 DNAJC5BQ9UF47 199 aa29.47■■■□□ 2.31
COL9A3-201ENST00000343916 APLP2Q06481 763 aa29.46■■■□□ 2.31
COL9A3-201ENST00000343916 HNRNPUL2Q1KMD3 747 aaKnown RBP29.36■■■□□ 2.29
COL9A3-201ENST00000343916 ARAP1Q96P48 1450 aa29.35■■■□□ 2.29
COL9A3-201ENST00000343916 CUX2O14529 1486 aa29.34■■■□□ 2.29
COL9A3-201ENST00000343916 FGD5Q6ZNL6 1462 aa29.3■■■□□ 2.28
COL9A3-201ENST00000343916 NESP48681 1621 aa29.29■■■□□ 2.28
COL9A3-201ENST00000343916 IGF1RP08069 1367 aa29.26■■■□□ 2.27
COL9A3-201ENST00000343916 FANCD2Q9BXW9 1451 aa29.25■■■□□ 2.27
COL9A3-201ENST00000343916 KANK4Q5T7N3 995 aaPredicted RBP29.17■■■□□ 2.26
COL9A3-201ENST00000343916 ARHGAP35Q9NRY4 1499 aa29.16■■■□□ 2.26
COL9A3-201ENST00000343916 CARMIL1Q5VZK9 1371 aa29.13■■■□□ 2.25
COL9A3-201ENST00000343916 LAMC3Q9Y6N6 1575 aa29.13■■■□□ 2.25
COL9A3-201ENST00000343916 RAD54L2Q9Y4B4 1467 aa29.06■■■□□ 2.24
COL9A3-201ENST00000343916 DNMBPQ6XZF7 1577 aa29.03■■■□□ 2.24
COL9A3-201ENST00000343916 TOPBP1Q92547 1522 aa29.02■■■□□ 2.24
COL9A3-201ENST00000343916 POLA1P09884 1462 aaPredicted RBP29■■■□□ 2.23
COL9A3-201ENST00000343916 ABCA10Q8WWZ4 1543 aa28.93■■■□□ 2.22
COL9A3-201ENST00000343916 DIEXFQ68CQ4 756 aaKnown RBP28.93■■■□□ 2.22
COL9A3-201ENST00000343916 PDS5BQ9NTI5 1447 aa28.92■■■□□ 2.22
COL9A3-201ENST00000343916 SCAF1Q9H7N4 1312 aaKnown RBP28.88■■■□□ 2.21
COL9A3-201ENST00000343916 RRBP1Q9P2E9 1410 aaKnown RBP28.86■■■□□ 2.21
COL9A3-201ENST00000343916 P3H3Q8IVL6 736 aa28.85■■■□□ 2.21
COL9A3-201ENST00000343916 URB2Q14146 1524 aaKnown RBP28.85■■■□□ 2.21
COL9A3-201ENST00000343916 KIF21AQ7Z4S6 1674 aa28.83■■■□□ 2.21
COL9A3-201ENST00000343916 ZNF316A6NFI3 1004 aaPredicted RBP28.8■■■□□ 2.2
COL9A3-201ENST00000343916 CCNB3Q8WWL7 1395 aa28.78■■■□□ 2.2
COL9A3-201ENST00000343916 TIAM1Q13009 1591 aa28.76■■■□□ 2.19
COL9A3-201ENST00000343916 ITGAEP38570 1179 aa28.74■■■□□ 2.19
COL9A3-201ENST00000343916 TDRD9Q8NDG6 1382 aaKnown RBP28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms