RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 SMARCA4P51532 1647 aa13.3□□□□□ -0.28
PTCHD4-201ENST00000339488 RBM10P98175 930 aaKnown RBP13.3□□□□□ -0.28
PTCHD4-201ENST00000339488 HIRIP3Q9BW71 556 aaPredicted RBP13.3□□□□□ -0.28
PTCHD4-201ENST00000339488 RSPH6AQ9H0K4 717 aa13.29□□□□□ -0.28
PTCHD4-201ENST00000339488 EIF4G1Q04637 1599 aaKnown RBP13.29□□□□□ -0.28
PTCHD4-201ENST00000339488 BAZ1AQ9NRL2 1556 aaPredicted RBP13.29□□□□□ -0.28
PTCHD4-201ENST00000339488 WASHC2CQ9Y4E1 1318 aa13.27□□□□□ -0.28
PTCHD4-201ENST00000339488 CEP162Q5TB80 1403 aa13.25□□□□□ -0.29
PTCHD4-201ENST00000339488 PDE4CQ08493 712 aa13.25□□□□□ -0.29
PTCHD4-201ENST00000339488 WRNQ14191 1432 aaPredicted RBP eCLIP13.25□□□□□ -0.29
PTCHD4-201ENST00000339488 WIZO95785 1651 aa13.24□□□□□ -0.29
PTCHD4-201ENST00000339488 HNRNPUQ00839 825 aaKnown RBP eCLIP13.24□□□□□ -0.295e-6■■■■□ 19.4
PTCHD4-201ENST00000339488 PPP4R2Q9NY27 417 aa13.24□□□□□ -0.29
PTCHD4-201ENST00000339488 SIN3AQ96ST3 1273 aa13.23□□□□□ -0.29
PTCHD4-201ENST00000339488 AAMPQ13685 434 aa13.22□□□□□ -0.29
PTCHD4-201ENST00000339488 BCL11BQ9C0K0 894 aaPredicted RBP13.22□□□□□ -0.29
PTCHD4-201ENST00000339488 FGD1P98174 961 aa13.21□□□□□ -0.29
PTCHD4-201ENST00000339488 DHX57Q6P158 1386 aaKnown RBP13.2□□□□□ -0.3
PTCHD4-201ENST00000339488 BAZ1BQ9UIG0 1483 aaKnown RBP13.19□□□□□ -0.3
PTCHD4-201ENST00000339488 FRAT1Q92837 279 aaPredicted RBP13.19□□□□□ -0.3
PTCHD4-201ENST00000339488 GSE1Q14687 1217 aa13.17□□□□□ -0.3
PTCHD4-201ENST00000339488 ARID4BQ4LE39 1312 aaPredicted RBP13.17□□□□□ -0.3
PTCHD4-201ENST00000339488 CC2D2AQ9P2K1 1620 aa13.17□□□□□ -0.3
PTCHD4-201ENST00000339488 DCAF11Q8TEB1 546 aa13.15□□□□□ -0.3
PTCHD4-201ENST00000339488 HSP90AA2PQ14568 343 aaPredicted RBP13.15□□□□□ -0.3
PTCHD4-201ENST00000339488 ATAD2BQ9ULI0 1458 aa13.14□□□□□ -0.31
PTCHD4-201ENST00000339488 DNAJC5BQ9UF47 199 aa13.14□□□□□ -0.31
PTCHD4-201ENST00000339488 ANP32CO43423 234 aa13.13□□□□□ -0.31
PTCHD4-201ENST00000339488 NAP1L5Q96NT1 182 aaPredicted RBP13.11□□□□□ -0.31
PTCHD4-201ENST00000339488 UBTFP17480 764 aaKnown RBP13.11□□□□□ -0.31
PTCHD4-201ENST00000339488 RRAGDQ9NQL2 400 aaPredicted RBP13.11□□□□□ -0.31
PTCHD4-201ENST00000339488 FAM43AQ8N2R8 423 aa13.1□□□□□ -0.31
PTCHD4-201ENST00000339488 PDIA4P13667 645 aaKnown RBP13.1□□□□□ -0.31
PTCHD4-201ENST00000339488 PEG3Q9GZU2 1588 aa13.1□□□□□ -0.31
PTCHD4-201ENST00000339488 PPP1R15AO75807 674 aaPredicted RBP13.09□□□□□ -0.31
PTCHD4-201ENST00000339488 USP35Q9P2H5 1018 aa13.07□□□□□ -0.32
PTCHD4-201ENST00000339488 SMARCA2P51531 1590 aa13.07□□□□□ -0.32
PTCHD4-201ENST00000339488 CCER2I3L3R5 266 aa13.06□□□□□ -0.32
PTCHD4-201ENST00000339488 SLC4A3P48751 1232 aa13.05□□□□□ -0.32
PTCHD4-201ENST00000339488 RGS3P49796 1198 aa13.04□□□□□ -0.32
PTCHD4-201ENST00000339488 RANGAP1P46060 587 aaPredicted RBP13.04□□□□□ -0.32
PTCHD4-201ENST00000339488 ARXQ96QS3 562 aa13.04□□□□□ -0.32
PTCHD4-201ENST00000339488 NFKBIBQ15653 356 aa13.03□□□□□ -0.32
PTCHD4-201ENST00000339488 HSP90AA1P07900 732 aaKnown RBP13.03□□□□□ -0.32
PTCHD4-201ENST00000339488 TOP2AP11388 1531 aaKnown RBP13.03□□□□□ -0.32
PTCHD4-201ENST00000339488 SENP3-EIF4A1A0A087X0R7 540 aa13.03□□□□□ -0.32
PTCHD4-201ENST00000339488 NCAPD3P42695 1498 aa13.02□□□□□ -0.33
PTCHD4-201ENST00000339488 PPM1GO15355 546 aaPredicted RBP13□□□□□ -0.33
PTCHD4-201ENST00000339488 RRP9O43818 475 aaKnown RBP12.99□□□□□ -0.33
PTCHD4-201ENST00000339488 HMGXB3Q12766 1538 aa12.98□□□□□ -0.33
PTCHD4-201ENST00000339488 CCDC184Q52MB2 194 aa12.95□□□□□ -0.34
PTCHD4-201ENST00000339488 WDR97A6NE52 1622 aa12.94□□□□□ -0.34
PTCHD4-201ENST00000339488 TNIKQ9UKE5 1360 aa12.94□□□□□ -0.34
PTCHD4-201ENST00000339488 ABCC8Q09428 1581 aa12.94□□□□□ -0.34
PTCHD4-201ENST00000339488 PRDM4Q9UKN5 801 aa12.93□□□□□ -0.34
PTCHD4-201ENST00000339488 FRAT2O75474 233 aaPredicted RBP12.93□□□□□ -0.34
PTCHD4-201ENST00000339488 FAM9BQ8IZU0 186 aa12.93□□□□□ -0.34
PTCHD4-201ENST00000339488 CCDC88BA6NC98 1476 aa12.92□□□□□ -0.34
PTCHD4-201ENST00000339488 SKAP1Q86WV1 359 aa12.92□□□□□ -0.34
PTCHD4-201ENST00000339488 PNNQ9H307 717 aaKnown RBP12.92□□□□□ -0.34
PTCHD4-201ENST00000339488 AKNAQ7Z591 1439 aa12.92□□□□□ -0.34
PTCHD4-201ENST00000339488 CHMP4BQ9H444 224 aaKnown RBP12.91□□□□□ -0.34
PTCHD4-201ENST00000339488 EEA1Q15075 1411 aa12.91□□□□□ -0.34
PTCHD4-201ENST00000339488 PAXIP1Q6ZW49 1069 aaPredicted RBP12.9□□□□□ -0.34
PTCHD4-201ENST00000339488 SOGA1O94964 1423 aa12.89□□□□□ -0.35
PTCHD4-201ENST00000339488 PDE4AP27815 886 aa12.88□□□□□ -0.35
PTCHD4-201ENST00000339488 BBXQ8WY36 941 aaPredicted RBP12.88□□□□□ -0.35
PTCHD4-201ENST00000339488 ARID3AQ99856 593 aa12.87□□□□□ -0.35
PTCHD4-201ENST00000339488 POGKQ9P215 609 aa12.86□□□□□ -0.35
PTCHD4-201ENST00000339488 KLHL34Q8N239 644 aa12.85□□□□□ -0.35
PTCHD4-201ENST00000339488 NAP1L2Q9ULW6 460 aaPredicted RBP12.84□□□□□ -0.35
PTCHD4-201ENST00000339488 ZHX1Q9UKY1 873 aaPredicted RBP12.83□□□□□ -0.35
PTCHD4-201ENST00000339488 RUSC2Q8N2Y8 1516 aa12.83□□□□□ -0.36
PTCHD4-201ENST00000339488 CNGB1Q14028 1251 aaPredicted RBP12.83□□□□□ -0.36
PTCHD4-201ENST00000339488 FOXD1Q16676 465 aa12.82□□□□□ -0.36
PTCHD4-201ENST00000339488 GTF2E1P29083 439 aaPredicted RBP12.8□□□□□ -0.36
PTCHD4-201ENST00000339488 BACH2Q9BYV9 841 aa12.8□□□□□ -0.36
PTCHD4-201ENST00000339488 CALD1Q05682 793 aaKnown RBP12.79□□□□□ -0.36
PTCHD4-201ENST00000339488 CLIP1P30622 1438 aa12.79□□□□□ -0.36
PTCHD4-201ENST00000339488 MAPKBP1O60336 1514 aa12.78□□□□□ -0.36
PTCHD4-201ENST00000339488 PANK2Q9BZ23 570 aa12.78□□□□□ -0.36
PTCHD4-201ENST00000339488 NESP48681 1621 aa12.77□□□□□ -0.36
PTCHD4-201ENST00000339488 PRDM10Q9NQV6 1147 aa12.77□□□□□ -0.36
PTCHD4-201ENST00000339488 TAF7LQ5H9L4 462 aa12.75□□□□□ -0.37
PTCHD4-201ENST00000339488 AMER1Q5JTC6 1135 aaPredicted RBP12.75□□□□□ -0.37
PTCHD4-201ENST00000339488 PLCD3Q8N3E9 789 aa12.75□□□□□ -0.37
PTCHD4-201ENST00000339488 CLCN1P35523 988 aa12.74□□□□□ -0.37
PTCHD4-201ENST00000339488 KANK4Q5T7N3 995 aaPredicted RBP12.74□□□□□ -0.37
PTCHD4-201ENST00000339488 MRS2Q9HD23 443 aa12.74□□□□□ -0.37
PTCHD4-201ENST00000339488 STAC3Q96MF2 364 aa12.73□□□□□ -0.37
PTCHD4-201ENST00000339488 ZBED9Q6R2W3 1325 aa12.73□□□□□ -0.37
PTCHD4-201ENST00000339488 VGLL3A8MV65 326 aa12.72□□□□□ -0.37
PTCHD4-201ENST00000339488 RAB3GAP2Q9H2M9 1393 aa12.72□□□□□ -0.37
PTCHD4-201ENST00000339488 TCERG1O14776 1098 aaKnown RBP12.71□□□□□ -0.37
PTCHD4-201ENST00000339488 EXOC6Q8TAG9 804 aa12.71□□□□□ -0.37
PTCHD4-201ENST00000339488 DDRGK1Q96HY6 314 aa12.71□□□□□ -0.37
PTCHD4-201ENST00000339488 VPS8Q8N3P4 1428 aa12.71□□□□□ -0.37
PTCHD4-201ENST00000339488 PDCL3Q9H2J4 239 aa12.71□□□□□ -0.37
PTCHD4-201ENST00000339488 ERBB4Q15303 1308 aa12.7□□□□□ -0.38
PTCHD4-201ENST00000339488 CFTRP13569 1480 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms