RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 NISCHQ9Y2I1 1504 aa17.22■□□□□ 0.35
PTCHD4-201ENST00000339488 PELP1Q8IZL8 1130 aaKnown RBP16.84■□□□□ 0.29
PTCHD4-201ENST00000339488 HRCP23327 699 aa16.59■□□□□ 0.25
PTCHD4-201ENST00000339488 PPARGC1BQ86YN6 1023 aaKnown RBP16.56■□□□□ 0.24
PTCHD4-201ENST00000339488 MYT1Q01538 1121 aa16.28■□□□□ 0.2
PTCHD4-201ENST00000339488 SCAF1Q9H7N4 1312 aaKnown RBP16.27■□□□□ 0.19
PTCHD4-201ENST00000339488 PCGF6Q9BYE7 350 aa16.09■□□□□ 0.17
PTCHD4-201ENST00000339488 BCL11AQ9H165 835 aa15.63■□□□□ 0.09
PTCHD4-201ENST00000339488 PRKCSHP14314 528 aaPredicted RBP15.62■□□□□ 0.09
PTCHD4-201ENST00000339488 MYO15BQ96JP2 1530 aa15.57■□□□□ 0.08
PTCHD4-201ENST00000339488 FAM9AQ8IZU1 332 aaPredicted RBP15.56■□□□□ 0.08
PTCHD4-201ENST00000339488 NEUROD1Q13562 356 aa15.55■□□□□ 0.08
PTCHD4-201ENST00000339488 GTF3C3Q9Y5Q9 886 aa15.54■□□□□ 0.08
PTCHD4-201ENST00000339488 ACIN1Q9UKV3 1341 aaKnown RBP15.49■□□□□ 0.07
PTCHD4-201ENST00000339488 TTBK1Q5TCY1 1321 aaPredicted RBP15.42■□□□□ 0.06
PTCHD4-201ENST00000339488 SUPT5HO00267 1087 aaKnown RBP15.27■□□□□ 0.04
PTCHD4-201ENST00000339488 CENPBP07199 599 aaPredicted RBP15.26■□□□□ 0.03
PTCHD4-201ENST00000339488 ZEB1P37275 1124 aaPredicted RBP15.1■□□□□ 0.01
PTCHD4-201ENST00000339488 SHROOM4Q9ULL8 1493 aa15.09■□□□□ 0.01
PTCHD4-201ENST00000339488 TRIM26Q12899 539 aaPredicted RBP15.09■□□□□ 0.01
PTCHD4-201ENST00000339488 CCDC180Q9P1Z9 1646 aa15.06■□□□□ 0
PTCHD4-201ENST00000339488 CHIC1Q5VXU3 224 aa15.05■□□□□ -0
PTCHD4-201ENST00000339488 CSRNP3Q8WYN3 585 aa15.04■□□□□ -0
PTCHD4-201ENST00000339488 LOC105371045A0A1W2PR82 267 aa15.02□□□□□ -0.01
PTCHD4-201ENST00000339488 YTHDC1Q96MU7 727 aaKnown RBP15□□□□□ -0.01
PTCHD4-201ENST00000339488 ANP32EQ9BTT0 268 aa15□□□□□ -0.01
PTCHD4-201ENST00000339488 DCAF1Q9Y4B6 1507 aa14.96□□□□□ -0.01
PTCHD4-201ENST00000339488 ERICH6Q7L0X2 663 aa14.87□□□□□ -0.03
PTCHD4-201ENST00000339488 DIEXFQ68CQ4 756 aaKnown RBP14.86□□□□□ -0.03
PTCHD4-201ENST00000339488 APLP2Q06481 763 aa14.83□□□□□ -0.03
PTCHD4-201ENST00000339488 ANO8Q9HCE9 1232 aaPredicted RBP14.69□□□□□ -0.06
PTCHD4-201ENST00000339488 TSHZ2Q9NRE2 1034 aa14.68□□□□□ -0.06
PTCHD4-201ENST00000339488 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.67□□□□□ -0.06
PTCHD4-201ENST00000339488 ABCC9O60706 1549 aa14.6□□□□□ -0.07
PTCHD4-201ENST00000339488 CCER1Q8TC90 406 aaPredicted RBP14.55□□□□□ -0.08
PTCHD4-201ENST00000339488 SUPT16HQ9Y5B9 1047 aaKnown RBP14.53□□□□□ -0.08
PTCHD4-201ENST00000339488 CCDC136Q96JN2 1154 aa14.5□□□□□ -0.09
PTCHD4-201ENST00000339488 MIER1Q8N108 512 aa14.48□□□□□ -0.09
PTCHD4-201ENST00000339488 EHMT2Q96KQ7 1210 aa14.45□□□□□ -0.1
PTCHD4-201ENST00000339488 ZCCHC6Q5VYS8 1495 aaKnown RBP14.43□□□□□ -0.1
PTCHD4-201ENST00000339488 TRIM41Q8WV44 630 aa14.42□□□□□ -0.1
PTCHD4-201ENST00000339488 SALL2Q9Y467 1007 aaPredicted RBP14.41□□□□□ -0.1
PTCHD4-201ENST00000339488 BCANQ96GW7 911 aa14.39□□□□□ -0.11
PTCHD4-201ENST00000339488 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
PTCHD4-201ENST00000339488 ZNF316A6NFI3 1004 aaPredicted RBP14.3□□□□□ -0.12
PTCHD4-201ENST00000339488 MSH5O43196 834 aa14.28□□□□□ -0.12
PTCHD4-201ENST00000339488 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.28□□□□□ -0.12
PTCHD4-201ENST00000339488 RBM19Q9Y4C8 960 aaKnown RBP14.24□□□□□ -0.13
PTCHD4-201ENST00000339488 DEKP35659 375 aaKnown RBP14.2□□□□□ -0.14
PTCHD4-201ENST00000339488 UBE2Q2Q8WVN8 375 aa14.19□□□□□ -0.14
PTCHD4-201ENST00000339488 RTN4Q9NQC3 1192 aaKnown RBP14.16□□□□□ -0.14
PTCHD4-201ENST00000339488 PLEKHG5O94827 1062 aa14.16□□□□□ -0.14
PTCHD4-201ENST00000339488 EIF5BO60841 1220 aaKnown RBP14.12□□□□□ -0.15
PTCHD4-201ENST00000339488 ITGAEP38570 1179 aa14.12□□□□□ -0.15
PTCHD4-201ENST00000339488 NACADO15069 1562 aa14.08□□□□□ -0.16
PTCHD4-201ENST00000339488 FKBP8Q14318 412 aa14.05□□□□□ -0.16
PTCHD4-201ENST00000339488 IL27Q8NEV9 243 aa14.04□□□□□ -0.16
PTCHD4-201ENST00000339488 CLSPNQ9HAW4 1339 aa14.04□□□□□ -0.16
PTCHD4-201ENST00000339488 RB1CC1Q8TDY2 1594 aa14.03□□□□□ -0.16
PTCHD4-201ENST00000339488 SLC24A1O60721 1099 aa14□□□□□ -0.17
PTCHD4-201ENST00000339488 NBR1Q14596 966 aa13.98□□□□□ -0.17
PTCHD4-201ENST00000339488 PKNOX2Q96KN3 472 aa13.98□□□□□ -0.17
PTCHD4-201ENST00000339488 SCRIBQ14160 1630 aa13.96□□□□□ -0.18
PTCHD4-201ENST00000339488 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
PTCHD4-201ENST00000339488 ERICH6BQ5W0A0 696 aa13.85□□□□□ -0.19
PTCHD4-201ENST00000339488 UNC13AQ9UPW8 1703 aa13.84□□□□□ -0.19
PTCHD4-201ENST00000339488 PODXL2Q9NZ53 605 aa13.83□□□□□ -0.2
PTCHD4-201ENST00000339488 FANCIQ9NVI1 1328 aa13.8□□□□□ -0.2
PTCHD4-201ENST00000339488 MYT1LQ9UL68 1186 aa13.78□□□□□ -0.2
PTCHD4-201ENST00000339488 TIMELESSQ9UNS1 1208 aa13.76□□□□□ -0.21
PTCHD4-201ENST00000339488 NEFLP07196 543 aa13.75□□□□□ -0.21
PTCHD4-201ENST00000339488 PABPN1Q86U42 306 aaKnown RBP eCLIP13.74□□□□□ -0.21
PTCHD4-201ENST00000339488 PAK3O75914 559 aaPredicted RBP13.73□□□□□ -0.21
PTCHD4-201ENST00000339488 IRX6P78412 446 aaPredicted RBP13.72□□□□□ -0.21
PTCHD4-201ENST00000339488 BICRAQ9NZM4 1560 aa13.71□□□□□ -0.22
PTCHD4-201ENST00000339488 HNRNPUL2Q1KMD3 747 aaKnown RBP13.68□□□□□ -0.22
PTCHD4-201ENST00000339488 CDK11AQ9UQ88 783 aaPredicted RBP13.65□□□□□ -0.22
PTCHD4-201ENST00000339488 TRIM52Q96A61 297 aa13.64□□□□□ -0.23
PTCHD4-201ENST00000339488 DAXXQ9UER7 740 aaPredicted RBP13.64□□□□□ -0.23
PTCHD4-201ENST00000339488 NOP58Q9Y2X3 529 aaKnown RBP13.63□□□□□ -0.23
PTCHD4-201ENST00000339488 RTL5Q5HYW3 569 aaPredicted RBP13.61□□□□□ -0.23
PTCHD4-201ENST00000339488 BRPF3Q9ULD4 1205 aa13.57□□□□□ -0.24
PTCHD4-201ENST00000339488 ZMYND15Q9H091 742 aa13.57□□□□□ -0.24
PTCHD4-201ENST00000339488 VSIG10Q8N0Z9 540 aa13.57□□□□□ -0.24
PTCHD4-201ENST00000339488 A0A0U1RQG5 324 aaPredicted RBP13.56□□□□□ -0.24
PTCHD4-201ENST00000339488 CECR2Q9BXF3 1484 aa13.49□□□□□ -0.25
PTCHD4-201ENST00000339488 AEBP2Q6ZN18 517 aaPredicted RBP13.44□□□□□ -0.26
PTCHD4-201ENST00000339488 LAS1LQ9Y4W2 734 aaKnown RBP13.43□□□□□ -0.26
PTCHD4-201ENST00000339488 B4GALNT3Q6L9W6 998 aa13.41□□□□□ -0.26
PTCHD4-201ENST00000339488 DDX10Q13206 875 aaKnown RBP13.39□□□□□ -0.27
PTCHD4-201ENST00000339488 NEFMP07197 916 aa13.37□□□□□ -0.27
PTCHD4-201ENST00000339488 MROH2BQ7Z745 1585 aa13.36□□□□□ -0.27
PTCHD4-201ENST00000339488 ZBTB47Q9UFB7 747 aaPredicted RBP13.35□□□□□ -0.27
PTCHD4-201ENST00000339488 GLIPR1L2Q4G1C9 344 aa13.34□□□□□ -0.27
PTCHD4-201ENST00000339488 WASHC2AQ641Q2 1341 aa13.33□□□□□ -0.28
PTCHD4-201ENST00000339488 C11orf95C9JLR9 678 aaPredicted RBP13.31□□□□□ -0.28
PTCHD4-201ENST00000339488 IPO9Q96P70 1041 aaKnown RBP13.31□□□□□ -0.28
PTCHD4-201ENST00000339488 RSF1Q96T23 1441 aaPredicted RBP13.31□□□□□ -0.28
PTCHD4-201ENST00000339488 NPM2Q86SE8 214 aaKnown RBP13.31□□□□□ -0.28
PTCHD4-201ENST00000339488 ANP32AP39687 249 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms