RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CECR2Q9BXF3 1484 aa21.61■■□□□ 1.05
NPHP3-201ENST00000337331 MSH5O43196 834 aa21.6■■□□□ 1.05
NPHP3-201ENST00000337331 PPP4R2Q9NY27 417 aa21.59■■□□□ 1.05
NPHP3-201ENST00000337331 ARXQ96QS3 562 aa21.57■■□□□ 1.04
NPHP3-201ENST00000337331 IL27Q8NEV9 243 aa21.57■■□□□ 1.04
NPHP3-201ENST00000337331 MRS2Q9HD23 443 aa21.51■■□□□ 1.03
NPHP3-201ENST00000337331 MTUS2Q5JR59 1369 aa21.51■■□□□ 1.03
NPHP3-201ENST00000337331 TMC1Q8TDI8 760 aa21.49■■□□□ 1.03
NPHP3-201ENST00000337331 EEA1Q15075 1411 aa21.49■■□□□ 1.03
NPHP3-201ENST00000337331 GOLGA3Q08378 1498 aa21.47■■□□□ 1.03
NPHP3-201ENST00000337331 TIMELESSQ9UNS1 1208 aa21.46■■□□□ 1.03
NPHP3-201ENST00000337331 PPM1GO15355 546 aaPredicted RBP21.43■■□□□ 1.02
NPHP3-201ENST00000337331 PKNOX2Q96KN3 472 aa21.42■■□□□ 1.02
NPHP3-201ENST00000337331 TNIKQ9UKE5 1360 aa21.42■■□□□ 1.02
NPHP3-201ENST00000337331 WRNQ14191 1432 aaPredicted RBP eCLIP21.41■■□□□ 1.02
NPHP3-201ENST00000337331 RRP7BPQ9NSQ0 103 aa21.41■■□□□ 1.02
NPHP3-201ENST00000337331 VSIG10Q8N0Z9 540 aa21.4■■□□□ 1.02
NPHP3-201ENST00000337331 KDM2AQ9Y2K7 1162 aa21.4■■□□□ 1.02
NPHP3-201ENST00000337331 NAP1L5Q96NT1 182 aaPredicted RBP21.39■■□□□ 1.02
NPHP3-201ENST00000337331 CHGAP10645 457 aaKnown RBP21.39■■□□□ 1.01
NPHP3-201ENST00000337331 SLC24A1O60721 1099 aa21.38■■□□□ 1.01
NPHP3-201ENST00000337331 EIF4G2P78344 907 aaKnown RBP eCLIP21.38■■□□□ 1.01
NPHP3-201ENST00000337331 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.38■■□□□ 1.012e-6■■□□□ 12
NPHP3-201ENST00000337331 IPO9Q96P70 1041 aaKnown RBP21.36■■□□□ 1.01
NPHP3-201ENST00000337331 SENP3-EIF4A1A0A087X0R7 540 aa21.36■■□□□ 1.01
NPHP3-201ENST00000337331 TSPY4P0CV99 314 aa21.35■■□□□ 1.01
NPHP3-201ENST00000337331 TSPY10P0CW01 314 aa21.35■■□□□ 1.01
NPHP3-201ENST00000337331 BAZ1AQ9NRL2 1556 aaPredicted RBP21.34■■□□□ 1.01
NPHP3-201ENST00000337331 UBE2Q2Q8WVN8 375 aa21.33■■□□□ 1.01
NPHP3-201ENST00000337331 MROH2BQ7Z745 1585 aa21.33■■□□□ 1
NPHP3-201ENST00000337331 PAK3O75914 559 aaPredicted RBP21.29■■□□□ 1
NPHP3-201ENST00000337331 SIN3AQ96ST3 1273 aa21.26■□□□□ 0.99
NPHP3-201ENST00000337331 CCER2I3L3R5 266 aa21.25■□□□□ 0.99
NPHP3-201ENST00000337331 CEP164Q9UPV0 1460 aa21.25■□□□□ 0.99
NPHP3-201ENST00000337331 BAZ1BQ9UIG0 1483 aaKnown RBP21.23■□□□□ 0.99
NPHP3-201ENST00000337331 ARID4BQ4LE39 1312 aaPredicted RBP21.23■□□□□ 0.99
NPHP3-201ENST00000337331 WDR43Q15061 677 aaKnown RBP eCLIP21.2■□□□□ 0.98
NPHP3-201ENST00000337331 DDRGK1Q96HY6 314 aa21.2■□□□□ 0.98
NPHP3-201ENST00000337331 RSPH6AQ9H0K4 717 aa21.2■□□□□ 0.98
NPHP3-201ENST00000337331 UPF2Q9HAU5 1272 aaKnown RBP21.2■□□□□ 0.98
NPHP3-201ENST00000337331 KIF27Q86VH2 1401 aa21.18■□□□□ 0.98
NPHP3-201ENST00000337331 SOGA1O94964 1423 aa21.17■□□□□ 0.98
NPHP3-201ENST00000337331 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.17■□□□□ 0.98
NPHP3-201ENST00000337331 CHMP7Q8WUX9 453 aaPredicted RBP21.17■□□□□ 0.98
NPHP3-201ENST00000337331 BRPF3Q9ULD4 1205 aa21.17■□□□□ 0.98
NPHP3-201ENST00000337331 HSP90AA1P07900 732 aaKnown RBP21.16■□□□□ 0.98
NPHP3-201ENST00000337331 STAG3Q9UJ98 1225 aa21.13■□□□□ 0.97
NPHP3-201ENST00000337331 PODXL2Q9NZ53 605 aa21.13■□□□□ 0.97
NPHP3-201ENST00000337331 RGL3Q3MIN7 710 aa21.11■□□□□ 0.97
NPHP3-201ENST00000337331 HSP90AA2PQ14568 343 aaPredicted RBP21.09■□□□□ 0.97
NPHP3-201ENST00000337331 GSE1Q14687 1217 aa21.09■□□□□ 0.97
NPHP3-201ENST00000337331 USP35Q9P2H5 1018 aa21.08■□□□□ 0.97
NPHP3-201ENST00000337331 NPM1P06748 294 aaKnown RBP eCLIP21.07■□□□□ 0.96
NPHP3-201ENST00000337331 CCNB3Q8WWL7 1395 aa21.06■□□□□ 0.96
NPHP3-201ENST00000337331 ESF1Q9H501 851 aaKnown RBP21.06■□□□□ 0.96
NPHP3-201ENST00000337331 WIZO95785 1651 aa21.06■□□□□ 0.96
NPHP3-201ENST00000337331 PLEKHD1A6NEE1 506 aa21.04■□□□□ 0.96
NPHP3-201ENST00000337331 PNNQ9H307 717 aaKnown RBP21.04■□□□□ 0.96
NPHP3-201ENST00000337331 CFDP1Q9UEE9 299 aaPredicted RBP21.03■□□□□ 0.96
NPHP3-201ENST00000337331 A0A0U1RQG5 324 aaPredicted RBP21■□□□□ 0.95
NPHP3-201ENST00000337331 ANP32BQ92688 251 aaKnown RBP21■□□□□ 0.95
NPHP3-201ENST00000337331 TRIM44Q96DX7 344 aaPredicted RBP20.99■□□□□ 0.95
NPHP3-201ENST00000337331 CARD11Q9BXL7 1154 aa20.98■□□□□ 0.95
NPHP3-201ENST00000337331 KANK4Q5T7N3 995 aaPredicted RBP20.96■□□□□ 0.95
NPHP3-201ENST00000337331 SLC4A3P48751 1232 aa20.94■□□□□ 0.94
NPHP3-201ENST00000337331 DHX57Q6P158 1386 aaKnown RBP20.94■□□□□ 0.94
NPHP3-201ENST00000337331 SMARCA4P51532 1647 aa20.93■□□□□ 0.94
NPHP3-201ENST00000337331 SENP3Q9H4L4 574 aaPredicted RBP20.93■□□□□ 0.94
NPHP3-201ENST00000337331 VPS8Q8N3P4 1428 aa20.93■□□□□ 0.94
NPHP3-201ENST00000337331 CCDC88BA6NC98 1476 aa20.93■□□□□ 0.94
NPHP3-201ENST00000337331 PLPPR3Q6T4P5 718 aa20.92■□□□□ 0.94
NPHP3-201ENST00000337331 SMARCA2P51531 1590 aa20.9■□□□□ 0.94
NPHP3-201ENST00000337331 CARMIL1Q5VZK9 1371 aa20.89■□□□□ 0.93
NPHP3-201ENST00000337331 ABCC8Q09428 1581 aa20.88■□□□□ 0.93
NPHP3-201ENST00000337331 ATAD2BQ9ULI0 1458 aa20.88■□□□□ 0.93
NPHP3-201ENST00000337331 KNSTRNQ9Y448 316 aa20.87■□□□□ 0.93
NPHP3-201ENST00000337331 FHAD1B1AJZ9 1412 aa20.86■□□□□ 0.93
NPHP3-201ENST00000337331 FRAT1Q92837 279 aaPredicted RBP20.85■□□□□ 0.93
NPHP3-201ENST00000337331 TCERG1O14776 1098 aaKnown RBP20.85■□□□□ 0.93
NPHP3-201ENST00000337331 L1TD1Q5T7N2 865 aaKnown RBP20.84■□□□□ 0.93
NPHP3-201ENST00000337331 ARID3AQ99856 593 aa20.84■□□□□ 0.93
NPHP3-201ENST00000337331 PDE4AP27815 886 aa20.83■□□□□ 0.92
NPHP3-201ENST00000337331 ZMYND15Q9H091 742 aa20.83■□□□□ 0.92
NPHP3-201ENST00000337331 CUX2O14529 1486 aa20.83■□□□□ 0.92
NPHP3-201ENST00000337331 RGS3P49796 1198 aa20.82■□□□□ 0.92
NPHP3-201ENST00000337331 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
NPHP3-201ENST00000337331 SETD5Q9C0A6 1442 aa20.8■□□□□ 0.92
NPHP3-201ENST00000337331 BECN1Q14457 450 aa20.8■□□□□ 0.92
NPHP3-201ENST00000337331 NFKBIBQ15653 356 aa20.79■□□□□ 0.92
NPHP3-201ENST00000337331 NEUROD2Q15784 382 aa20.79■□□□□ 0.92
NPHP3-201ENST00000337331 CDCA8Q53HL2 280 aa20.79■□□□□ 0.92
NPHP3-201ENST00000337331 GZF1Q9H116 711 aaPredicted RBP20.79■□□□□ 0.92
NPHP3-201ENST00000337331 TNNT2P45379 298 aaPredicted RBP20.77■□□□□ 0.92
NPHP3-201ENST00000337331 HSPA5P11021 654 aaKnown RBP20.75■□□□□ 0.91
NPHP3-201ENST00000337331 AMER1Q5JTC6 1135 aaPredicted RBP20.75■□□□□ 0.91
NPHP3-201ENST00000337331 MYH16Q9H6N6 1097 aa20.74■□□□□ 0.91
NPHP3-201ENST00000337331 CC2D1BQ5T0F9 858 aaKnown RBP20.74■□□□□ 0.91
NPHP3-201ENST00000337331 RAB3GAP2Q9H2M9 1393 aa20.74■□□□□ 0.91
NPHP3-201ENST00000337331 DCAF11Q8TEB1 546 aa20.74■□□□□ 0.91
NPHP3-201ENST00000337331 SLKQ9H2G2 1235 aaPredicted RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms