RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 NISCHQ9Y2I1 1504 aa27.45■■□□□ 1.98
NPHP3-201ENST00000337331 DCAF8L2P0C7V8 631 aa27.44■■□□□ 1.98
NPHP3-201ENST00000337331 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
NPHP3-201ENST00000337331 PELP1Q8IZL8 1130 aaKnown RBP26.54■■□□□ 1.84
NPHP3-201ENST00000337331 SHROOM4Q9ULL8 1493 aa26.09■■□□□ 1.77
NPHP3-201ENST00000337331 PCGF6Q9BYE7 350 aa25.97■■□□□ 1.75
NPHP3-201ENST00000337331 MYT1Q01538 1121 aa25.9■■□□□ 1.74
NPHP3-201ENST00000337331 HRCP23327 699 aa25.87■■□□□ 1.73
NPHP3-201ENST00000337331 PPARGC1BQ86YN6 1023 aaKnown RBP25.61■■□□□ 1.69
NPHP3-201ENST00000337331 EHMT2Q96KQ7 1210 aa25.5■■□□□ 1.67
NPHP3-201ENST00000337331 FAM9AQ8IZU1 332 aaPredicted RBP24.99■■□□□ 1.59
NPHP3-201ENST00000337331 CENPBP07199 599 aaPredicted RBP24.96■■□□□ 1.59
NPHP3-201ENST00000337331 ZEB1P37275 1124 aaPredicted RBP24.86■■□□□ 1.57
NPHP3-201ENST00000337331 APLP2Q06481 763 aa24.69■■□□□ 1.54
NPHP3-201ENST00000337331 TTBK1Q5TCY1 1321 aaPredicted RBP24.67■■□□□ 1.54
NPHP3-201ENST00000337331 SCAF1Q9H7N4 1312 aaKnown RBP24.66■■□□□ 1.54
NPHP3-201ENST00000337331 YTHDC1Q96MU7 727 aaKnown RBP24.52■■□□□ 1.52
NPHP3-201ENST00000337331 TRIM26Q12899 539 aaPredicted RBP24.51■■□□□ 1.51
NPHP3-201ENST00000337331 GTF3C3Q9Y5Q9 886 aa24.51■■□□□ 1.51
NPHP3-201ENST00000337331 TRIM41Q8WV44 630 aa24.49■■□□□ 1.51
NPHP3-201ENST00000337331 CCER1Q8TC90 406 aaPredicted RBP24.3■■□□□ 1.48
NPHP3-201ENST00000337331 ACIN1Q9UKV3 1341 aaKnown RBP24.3■■□□□ 1.48
NPHP3-201ENST00000337331 RANGAP1P46060 587 aaPredicted RBP24.25■■□□□ 1.47
NPHP3-201ENST00000337331 LOC105371045A0A1W2PR82 267 aa24.25■■□□□ 1.47
NPHP3-201ENST00000337331 CHIC1Q5VXU3 224 aa24.22■■□□□ 1.47
NPHP3-201ENST00000337331 NEUROD1Q13562 356 aa24.1■■□□□ 1.45
NPHP3-201ENST00000337331 UBTFP17480 764 aaKnown RBP24.07■■□□□ 1.44
NPHP3-201ENST00000337331 DIEXFQ68CQ4 756 aaKnown RBP24.02■■□□□ 1.44
NPHP3-201ENST00000337331 ERICH6Q7L0X2 663 aa23.94■■□□□ 1.42
NPHP3-201ENST00000337331 ATP1B4Q9UN42 357 aaPredicted RBP23.84■■□□□ 1.41
NPHP3-201ENST00000337331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.78■■□□□ 1.4
NPHP3-201ENST00000337331 BCL11AQ9H165 835 aa23.65■■□□□ 1.38
NPHP3-201ENST00000337331 ABCC9O60706 1549 aa23.46■■□□□ 1.35
NPHP3-201ENST00000337331 NEFLP07196 543 aa23.44■■□□□ 1.34
NPHP3-201ENST00000337331 MYO15BQ96JP2 1530 aa23.4■■□□□ 1.34
NPHP3-201ENST00000337331 HNRNPUL2Q1KMD3 747 aaKnown RBP23.36■■□□□ 1.33
NPHP3-201ENST00000337331 BCANQ96GW7 911 aa23.35■■□□□ 1.33
NPHP3-201ENST00000337331 ITGAEP38570 1179 aa23.34■■□□□ 1.33
NPHP3-201ENST00000337331 ANP32EQ9BTT0 268 aa23.34■■□□□ 1.33
NPHP3-201ENST00000337331 DCAF1Q9Y4B6 1507 aa23.32■■□□□ 1.32
NPHP3-201ENST00000337331 ZNF316A6NFI3 1004 aaPredicted RBP23.22■■□□□ 1.31
NPHP3-201ENST00000337331 CCDC180Q9P1Z9 1646 aa23.17■■□□□ 1.3
NPHP3-201ENST00000337331 CSRNP3Q8WYN3 585 aa23■■□□□ 1.27
NPHP3-201ENST00000337331 MIER1Q8N108 512 aa22.99■■□□□ 1.27
NPHP3-201ENST00000337331 POLR3GLQ9BT43 218 aa22.92■■□□□ 1.26
NPHP3-201ENST00000337331 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
NPHP3-201ENST00000337331 CNGB1Q14028 1251 aaPredicted RBP22.85■■□□□ 1.25
NPHP3-201ENST00000337331 RTL5Q5HYW3 569 aaPredicted RBP22.81■■□□□ 1.24
NPHP3-201ENST00000337331 FKBP8Q14318 412 aa22.78■■□□□ 1.24
NPHP3-201ENST00000337331 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
NPHP3-201ENST00000337331 CLSPNQ9HAW4 1339 aa22.77■■□□□ 1.24
NPHP3-201ENST00000337331 PRKCSHP14314 528 aaPredicted RBP22.75■■□□□ 1.23
NPHP3-201ENST00000337331 SUPT16HQ9Y5B9 1047 aaKnown RBP22.73■■□□□ 1.23
NPHP3-201ENST00000337331 FAM50AQ14320 339 aaKnown RBP22.69■■□□□ 1.22
NPHP3-201ENST00000337331 EIF5BO60841 1220 aaKnown RBP22.68■■□□□ 1.22
NPHP3-201ENST00000337331 CDK11AQ9UQ88 783 aaPredicted RBP22.66■■□□□ 1.22
NPHP3-201ENST00000337331 TSHZ2Q9NRE2 1034 aa22.66■■□□□ 1.22
NPHP3-201ENST00000337331 MYT1LQ9UL68 1186 aa22.59■■□□□ 1.21
NPHP3-201ENST00000337331 NBR1Q14596 966 aa22.55■■□□□ 1.2
NPHP3-201ENST00000337331 DAXXQ9UER7 740 aaPredicted RBP22.52■■□□□ 1.2
NPHP3-201ENST00000337331 TRIM52Q96A61 297 aa22.46■■□□□ 1.19
NPHP3-201ENST00000337331 SCRIBQ14160 1630 aa22.44■■□□□ 1.18
NPHP3-201ENST00000337331 RBM19Q9Y4C8 960 aaKnown RBP22.41■■□□□ 1.18
NPHP3-201ENST00000337331 RTN4Q9NQC3 1192 aaKnown RBP22.38■■□□□ 1.17
NPHP3-201ENST00000337331 DEKP35659 375 aaKnown RBP22.34■■□□□ 1.17
NPHP3-201ENST00000337331 ANP32CO43423 234 aa22.33■■□□□ 1.17
NPHP3-201ENST00000337331 P3H3Q8IVL6 736 aa22.26■■□□□ 1.15
NPHP3-201ENST00000337331 ZNF326Q5BKZ1 582 aaKnown RBP22.24■■□□□ 1.15
NPHP3-201ENST00000337331 SLC4A1APQ9BWU0 796 aaKnown RBP22.24■■□□□ 1.15
NPHP3-201ENST00000337331 CCDC136Q96JN2 1154 aa22.22■■□□□ 1.15
NPHP3-201ENST00000337331 IRX6P78412 446 aaPredicted RBP22.19■■□□□ 1.14
NPHP3-201ENST00000337331 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.18■■□□□ 1.14
NPHP3-201ENST00000337331 RB1CC1Q8TDY2 1594 aa22.17■■□□□ 1.14
NPHP3-201ENST00000337331 ANP32AP39687 249 aaKnown RBP22.16■■□□□ 1.14
NPHP3-201ENST00000337331 ANO8Q9HCE9 1232 aaPredicted RBP22.15■■□□□ 1.14
NPHP3-201ENST00000337331 NACADO15069 1562 aa22.12■■□□□ 1.13
NPHP3-201ENST00000337331 DDX10Q13206 875 aaKnown RBP22.09■■□□□ 1.13
NPHP3-201ENST00000337331 ARID3CA6NKF2 412 aa22.08■■□□□ 1.12
NPHP3-201ENST00000337331 NPM2Q86SE8 214 aaKnown RBP22.07■■□□□ 1.12
NPHP3-201ENST00000337331 ZBTB47Q9UFB7 747 aaPredicted RBP22.03■■□□□ 1.12
NPHP3-201ENST00000337331 FBLN2P98095 1184 aa22.02■■□□□ 1.12
NPHP3-201ENST00000337331 GLIPR1L2Q4G1C9 344 aa22.01■■□□□ 1.11
NPHP3-201ENST00000337331 HNRNPUQ00839 825 aaKnown RBP eCLIP21.96■■□□□ 1.11
NPHP3-201ENST00000337331 NOP58Q9Y2X3 529 aaKnown RBP21.89■■□□□ 1.1
NPHP3-201ENST00000337331 SALL2Q9Y467 1007 aaPredicted RBP21.85■■□□□ 1.09
NPHP3-201ENST00000337331 ZNF777Q9ULD5 760 aaPredicted RBP21.85■■□□□ 1.09
NPHP3-201ENST00000337331 TONSLQ96HA7 1378 aa21.84■■□□□ 1.09
NPHP3-201ENST00000337331 HIRIP3Q9BW71 556 aaPredicted RBP21.78■■□□□ 1.08
NPHP3-201ENST00000337331 ERICH6BQ5W0A0 696 aa21.77■■□□□ 1.08
NPHP3-201ENST00000337331 RSF1Q96T23 1441 aaPredicted RBP21.75■■□□□ 1.07
NPHP3-201ENST00000337331 KCNH8Q96L42 1107 aa21.75■■□□□ 1.07
NPHP3-201ENST00000337331 NEFMP07197 916 aa21.72■■□□□ 1.07
NPHP3-201ENST00000337331 FAM9BQ8IZU0 186 aa21.71■■□□□ 1.07
NPHP3-201ENST00000337331 LAS1LQ9Y4W2 734 aaKnown RBP21.71■■□□□ 1.07
NPHP3-201ENST00000337331 CLIP1P30622 1438 aa21.69■■□□□ 1.06
NPHP3-201ENST00000337331 CHIC2Q9UKJ5 165 aa21.69■■□□□ 1.06
NPHP3-201ENST00000337331 B4GALNT3Q6L9W6 998 aa21.66■■□□□ 1.06
NPHP3-201ENST00000337331 CANXP27824 592 aaKnown RBP21.66■■□□□ 1.06
NPHP3-201ENST00000337331 FANCIQ9NVI1 1328 aa21.62■■□□□ 1.05
NPHP3-201ENST00000337331 CEP162Q5TB80 1403 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms