RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 NUP160Q12769 1436 aa4.08□□□□□ -1.76
LINC00643-201ENST00000334389 KDM5BQ9UGL1 1544 aa4.07□□□□□ -1.76
LINC00643-201ENST00000334389 HOXD11P31277 338 aaPredicted RBP4.07□□□□□ -1.76
LINC00643-201ENST00000334389 MROH2AA6NES4 1674 aa4.07□□□□□ -1.76
LINC00643-201ENST00000334389 CUL7Q14999 1698 aa4.07□□□□□ -1.76
LINC00643-201ENST00000334389 FER1L4A9Z1Z3 1794 aa4.06□□□□□ -1.76
LINC00643-201ENST00000334389 BCORL1Q5H9F3 1711 aa4.06□□□□□ -1.76
LINC00643-201ENST00000334389 SYNJ2O15056 1496 aa4.05□□□□□ -1.76
LINC00643-201ENST00000334389 ZNF142P52746 1687 aaPredicted RBP4.05□□□□□ -1.76
LINC00643-201ENST00000334389 PHLDB1Q86UU1 1377 aa4.05□□□□□ -1.76
LINC00643-201ENST00000334389 RUSC2Q8N2Y8 1516 aa4.05□□□□□ -1.76
LINC00643-201ENST00000334389 EPRSP07814 1512 aaKnown RBP4.04□□□□□ -1.76
LINC00643-201ENST00000334389 ZMYM4Q5VZL5 1548 aa4.04□□□□□ -1.76
LINC00643-201ENST00000334389 ABCC10Q5T3U5 1492 aa4.04□□□□□ -1.76
LINC00643-201ENST00000334389 FANCD2Q9BXW9 1451 aa4.04□□□□□ -1.76
LINC00643-201ENST00000334389 TOPBP1Q92547 1522 aa4.03□□□□□ -1.76
LINC00643-201ENST00000334389 ARAP3Q8WWN8 1544 aa4.03□□□□□ -1.76
LINC00643-201ENST00000334389 ABCA10Q8WWZ4 1543 aa4.02□□□□□ -1.77
LINC00643-201ENST00000334389 PABPN1Q86U42 306 aaKnown RBP eCLIP4.02□□□□□ -1.77
LINC00643-201ENST00000334389 TTC37Q6PGP7 1564 aa4.01□□□□□ -1.77
LINC00643-201ENST00000334389 HECW2Q9P2P5 1572 aa4.01□□□□□ -1.77
LINC00643-201ENST00000334389 MAGI3Q5TCQ9 1506 aa4□□□□□ -1.77
LINC00643-201ENST00000334389 PREX1Q8TCU6 1659 aa4□□□□□ -1.77
LINC00643-201ENST00000334389 PLSCR2Q9NRY7 297 aa3.99□□□□□ -1.77
LINC00643-201ENST00000334389 KDM5AP29375 1690 aaKnown RBP3.99□□□□□ -1.77
LINC00643-201ENST00000334389 CEP170Q5SW79 1584 aa3.98□□□□□ -1.77
LINC00643-201ENST00000334389 GRIN2BQ13224 1484 aa3.98□□□□□ -1.77
LINC00643-201ENST00000334389 PCF11O94913 1555 aaKnown RBP3.97□□□□□ -1.77
LINC00643-201ENST00000334389 ADCY10Q96PN6 1610 aa3.96□□□□□ -1.77
LINC00643-201ENST00000334389 TEX14Q8IWB6 1497 aa3.96□□□□□ -1.77
LINC00643-201ENST00000334389 MROH2BQ7Z745 1585 aa3.96□□□□□ -1.78
LINC00643-201ENST00000334389 KIF14Q15058 1648 aa3.95□□□□□ -1.78
LINC00643-201ENST00000334389 SNAPC4Q5SXM2 1469 aa3.95□□□□□ -1.78
LINC00643-201ENST00000334389 SYNMO15061 1565 aa3.95□□□□□ -1.78
LINC00643-201ENST00000334389 RBM42Q9BTD8 480 aaKnown RBP3.95□□□□□ -1.78
LINC00643-201ENST00000334389 WIZO95785 1651 aa3.95□□□□□ -1.78
LINC00643-201ENST00000334389 ABCA9Q8IUA7 1624 aa3.94□□□□□ -1.78
LINC00643-201ENST00000334389 OSCARQ8IYS5 282 aa3.93□□□□□ -1.78
LINC00643-201ENST00000334389 CCDC88BA6NC98 1476 aa3.93□□□□□ -1.78
LINC00643-201ENST00000334389 ARHGEF40Q8TER5 1519 aa3.93□□□□□ -1.78
LINC00643-201ENST00000334389 SPATA31D1Q6ZQQ2 1576 aa3.92□□□□□ -1.78
LINC00643-201ENST00000334389 COL17A1Q9UMD9 1497 aaPredicted RBP3.92□□□□□ -1.78
LINC00643-201ENST00000334389 MAPK8IP2Q13387 824 aaPredicted RBP3.91□□□□□ -1.78
LINC00643-201ENST00000334389 MAGI2Q86UL8 1455 aa3.91□□□□□ -1.78
LINC00643-201ENST00000334389 PLB1Q6P1J6 1458 aa3.91□□□□□ -1.78
LINC00643-201ENST00000334389 LHX8Q68G74 356 aa3.9□□□□□ -1.78
LINC00643-201ENST00000334389 KIAA0556O60303 1618 aa3.9□□□□□ -1.79
LINC00643-201ENST00000334389 UGGT2Q9NYU1 1516 aa3.9□□□□□ -1.79
LINC00643-201ENST00000334389 GRIN2AQ12879 1464 aa3.9□□□□□ -1.79
LINC00643-201ENST00000334389 RICTORQ6R327 1708 aa3.9□□□□□ -1.79
LINC00643-201ENST00000334389 CHRDL2Q6WN34 429 aa3.89□□□□□ -1.79
LINC00643-201ENST00000334389 PTPRTO14522 1441 aa3.89□□□□□ -1.79
LINC00643-201ENST00000334389 GAPVD1Q14C86 1478 aa3.89□□□□□ -1.79
LINC00643-201ENST00000334389 POLA1P09884 1462 aaPredicted RBP3.89□□□□□ -1.79
LINC00643-201ENST00000334389 WDR7Q9Y4E6 1490 aa3.89□□□□□ -1.79
LINC00643-201ENST00000334389 ABCC2Q92887 1545 aa3.88□□□□□ -1.79
LINC00643-201ENST00000334389 DEPDC5O75140 1603 aa3.88□□□□□ -1.79
LINC00643-201ENST00000334389 LAMC1P11047 1609 aa3.88□□□□□ -1.79
LINC00643-201ENST00000334389 LRP5O75197 1615 aa3.88□□□□□ -1.79
LINC00643-201ENST00000334389 AGLP35573 1532 aa3.88□□□□□ -1.79
LINC00643-201ENST00000334389 KDM5CP41229 1560 aa3.88□□□□□ -1.79
LINC00643-201ENST00000334389 FRMPD1Q5SYB0 1578 aa3.87□□□□□ -1.79
LINC00643-201ENST00000334389 CAMSAP2Q08AD1 1489 aa3.87□□□□□ -1.79
LINC00643-201ENST00000334389 DCAF8L1A6NGE4 600 aa3.87□□□□□ -1.79
LINC00643-201ENST00000334389 DSG3P32926 999 aa3.87□□□□□ -1.79
LINC00643-201ENST00000334389 CTTNBP2Q8WZ74 1663 aa3.87□□□□□ -1.79
LINC00643-201ENST00000334389 NEO1Q92859 1461 aa3.87□□□□□ -1.79
LINC00643-201ENST00000334389 AQRO60306 1485 aaKnown RBP eCLIP3.86□□□□□ -1.79
LINC00643-201ENST00000334389 ARHGEF12Q9NZN5 1544 aa3.86□□□□□ -1.79
LINC00643-201ENST00000334389 FHAD1B1AJZ9 1412 aa3.86□□□□□ -1.79
LINC00643-201ENST00000334389 ABCA8O94911 1581 aa3.84□□□□□ -1.79
LINC00643-201ENST00000334389 ZCCHC11Q5TAX3 1644 aaKnown RBP3.84□□□□□ -1.79
LINC00643-201ENST00000334389 RNF216Q9NWF9 866 aaPredicted RBP3.83□□□□□ -1.8
LINC00643-201ENST00000334389 EFCAB5A4FU69 1503 aa3.83□□□□□ -1.8
LINC00643-201ENST00000334389 POLR1AO95602 1720 aaPredicted RBP3.83□□□□□ -1.8
LINC00643-201ENST00000334389 SPHKAPQ2M3C7 1700 aa3.83□□□□□ -1.8
LINC00643-201ENST00000334389 CUX1P39880 1505 aa3.83□□□□□ -1.8
LINC00643-201ENST00000334389 STRCQ7RTU9 1775 aa3.83□□□□□ -1.8
LINC00643-201ENST00000334389 PLA2R1Q13018 1463 aa3.83□□□□□ -1.8
LINC00643-201ENST00000334389 LTBP4Q8N2S1 1624 aa3.82□□□□□ -1.8
LINC00643-201ENST00000334389 ADGRL1O94910 1474 aa3.82□□□□□ -1.8
LINC00643-201ENST00000334389 ZC3H13Q5T200 1668 aaKnown RBP3.82□□□□□ -1.8
LINC00643-201ENST00000334389 PTPN23Q9H3S7 1636 aa3.82□□□□□ -1.8
LINC00643-201ENST00000334389 FBXO41Q8TF61 875 aa3.81□□□□□ -1.8
LINC00643-201ENST00000334389 CPS1P31327 1500 aa3.81□□□□□ -1.8
LINC00643-201ENST00000334389 SETD1AO15047 1707 aaKnown RBP3.81□□□□□ -1.8
LINC00643-201ENST00000334389 CDK12Q9NYV4 1490 aaPredicted RBP3.8□□□□□ -1.8
LINC00643-201ENST00000334389 CROCC2H7BZ55 1655 aa3.79□□□□□ -1.8
LINC00643-201ENST00000334389 SAMD9Q5K651 1589 aa3.79□□□□□ -1.8
LINC00643-201ENST00000334389 RNF17Q9BXT8 1623 aaKnown RBP3.79□□□□□ -1.8
LINC00643-201ENST00000334389 IQGAP2Q13576 1575 aa3.79□□□□□ -1.8
LINC00643-201ENST00000334389 APLP2Q06481 763 aa3.78□□□□□ -1.8
LINC00643-201ENST00000334389 RGPD3A6NKT7 1758 aaPredicted RBP3.78□□□□□ -1.8
LINC00643-201ENST00000334389 RGPD4Q7Z3J3 1758 aa3.78□□□□□ -1.8
LINC00643-201ENST00000334389 CLCN6P51797 869 aa3.78□□□□□ -1.81
LINC00643-201ENST00000334389 NHSL1Q5SYE7 1610 aa3.77□□□□□ -1.81
LINC00643-201ENST00000334389 NPATQ14207 1427 aa3.77□□□□□ -1.81
LINC00643-201ENST00000334389 COL24A1Q17RW2 1714 aa3.77□□□□□ -1.81
LINC00643-201ENST00000334389 FHOD3Q2V2M9 1422 aa3.77□□□□□ -1.81
LINC00643-201ENST00000334389 PLEKHH2Q8IVE3 1493 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms