RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 POTEDQ86YR6 584 aa6.3□□□□□ -1.4
LINC00643-201ENST00000334389 AEBP2Q6ZN18 517 aaPredicted RBP6.26□□□□□ -1.41
LINC00643-201ENST00000334389 CHIC1Q5VXU3 224 aa6.17□□□□□ -1.42
LINC00643-201ENST00000334389 SENP3Q9H4L4 574 aaPredicted RBP5.78□□□□□ -1.48
LINC00643-201ENST00000334389 CCDC180Q9P1Z9 1646 aa5.76□□□□□ -1.49
LINC00643-201ENST00000334389 SHROOM4Q9ULL8 1493 aa5.65□□□□□ -1.5
LINC00643-201ENST00000334389 MYO15BQ96JP2 1530 aa5.5□□□□□ -1.53
LINC00643-201ENST00000334389 MSH5O43196 834 aa5.5□□□□□ -1.53
LINC00643-201ENST00000334389 NISCHQ9Y2I1 1504 aa5.47□□□□□ -1.53
LINC00643-201ENST00000334389 PHF23Q9BUL5 403 aaPredicted RBP5.38□□□□□ -1.55
LINC00643-201ENST00000334389 FOXD1Q16676 465 aa5.23□□□□□ -1.57
LINC00643-201ENST00000334389 NACADO15069 1562 aa5.21□□□□□ -1.58
LINC00643-201ENST00000334389 DCAF1Q9Y4B6 1507 aa5.17□□□□□ -1.58
LINC00643-201ENST00000334389 RB1CC1Q8TDY2 1594 aa5.16□□□□□ -1.58
LINC00643-201ENST00000334389 UNC13AQ9UPW8 1703 aa5.12□□□□□ -1.59
LINC00643-201ENST00000334389 CUX2O14529 1486 aa5.04□□□□□ -1.6
LINC00643-201ENST00000334389 BICRAQ9NZM4 1560 aa4.96□□□□□ -1.62
LINC00643-201ENST00000334389 BAZ1BQ9UIG0 1483 aaKnown RBP4.92□□□□□ -1.62
LINC00643-201ENST00000334389 SMARCA2P51531 1590 aa4.88□□□□□ -1.63
LINC00643-201ENST00000334389 WDR97A6NE52 1622 aa4.88□□□□□ -1.63
LINC00643-201ENST00000334389 CACNB1Q02641 598 aaPredicted RBP4.87□□□□□ -1.63
LINC00643-201ENST00000334389 PEG3Q9GZU2 1588 aa4.84□□□□□ -1.64
LINC00643-201ENST00000334389 PRDM2Q13029 1718 aa4.81□□□□□ -1.64
LINC00643-201ENST00000334389 POTEHQ6S545 545 aa4.8□□□□□ -1.64
LINC00643-201ENST00000334389 HMGXB3Q12766 1538 aa4.8□□□□□ -1.64
LINC00643-201ENST00000334389 THOC2Q8NI27 1593 aaKnown RBP4.76□□□□□ -1.65
LINC00643-201ENST00000334389 CC2D2AQ9P2K1 1620 aa4.73□□□□□ -1.65
LINC00643-201ENST00000334389 EIF4G1Q04637 1599 aaKnown RBP4.73□□□□□ -1.65
LINC00643-201ENST00000334389 DNAJC5Q9H3Z4 198 aa4.72□□□□□ -1.65
LINC00643-201ENST00000334389 LAMC3Q9Y6N6 1575 aa4.7□□□□□ -1.66
LINC00643-201ENST00000334389 PIAS4Q8N2W9 510 aaPredicted RBP4.68□□□□□ -1.66
LINC00643-201ENST00000334389 ABCC9O60706 1549 aa4.64□□□□□ -1.67
LINC00643-201ENST00000334389 WDR62O43379 1518 aa4.63□□□□□ -1.67
LINC00643-201ENST00000334389 NCAPD3P42695 1498 aa4.61□□□□□ -1.67
LINC00643-201ENST00000334389 ZCCHC6Q5VYS8 1495 aaKnown RBP4.6□□□□□ -1.67
LINC00643-201ENST00000334389 CECR2Q9BXF3 1484 aa4.54□□□□□ -1.68
LINC00643-201ENST00000334389 C1QBPQ07021 282 aaKnown RBP4.5□□□□□ -1.69
LINC00643-201ENST00000334389 BAZ1AQ9NRL2 1556 aaPredicted RBP4.49□□□□□ -1.69
LINC00643-201ENST00000334389 RNF39Q9H2S5 420 aa4.48□□□□□ -1.69
LINC00643-201ENST00000334389 DMRT2Q9Y5R5 561 aa4.47□□□□□ -1.69
LINC00643-201ENST00000334389 DNAJC5BQ9UF47 199 aa4.46□□□□□ -1.69
LINC00643-201ENST00000334389 RSF1Q96T23 1441 aaPredicted RBP4.46□□□□□ -1.7
LINC00643-201ENST00000334389 ERCC6L2Q5T890 1561 aa4.44□□□□□ -1.7
LINC00643-201ENST00000334389 KIF21AQ7Z4S6 1674 aa4.42□□□□□ -1.7
LINC00643-201ENST00000334389 SMARCA4P51532 1647 aa4.42□□□□□ -1.7
LINC00643-201ENST00000334389 CLASP1Q7Z460 1538 aa4.42□□□□□ -1.7
LINC00643-201ENST00000334389 SHROOM2Q13796 1616 aa4.42□□□□□ -1.7
LINC00643-201ENST00000334389 NESP48681 1621 aa4.4□□□□□ -1.7
LINC00643-201ENST00000334389 RIMBP3CA6NJZ7 1639 aa4.4□□□□□ -1.71
LINC00643-201ENST00000334389 RIMBP3BA6NNM3 1639 aa4.4□□□□□ -1.71
LINC00643-201ENST00000334389 RIMBP3Q9UFD9 1639 aa4.4□□□□□ -1.71
LINC00643-201ENST00000334389 ABCC8Q09428 1581 aa4.4□□□□□ -1.71
LINC00643-201ENST00000334389 KDM6BO15054 1643 aa4.39□□□□□ -1.71
LINC00643-201ENST00000334389 MRC2Q9UBG0 1479 aa4.38□□□□□ -1.71
LINC00643-201ENST00000334389 GLI2P10070 1586 aa4.34□□□□□ -1.72
LINC00643-201ENST00000334389 IQSEC2Q5JU85 1478 aa4.32□□□□□ -1.72
LINC00643-201ENST00000334389 ATAD2BQ9ULI0 1458 aa4.31□□□□□ -1.72
LINC00643-201ENST00000334389 MAPKBP1O60336 1514 aa4.3□□□□□ -1.72
LINC00643-201ENST00000334389 TARBP1Q13395 1621 aaKnown RBP4.3□□□□□ -1.72
LINC00643-201ENST00000334389 PDS5BQ9NTI5 1447 aa4.29□□□□□ -1.72
LINC00643-201ENST00000334389 KIF13AQ9H1H9 1805 aa4.29□□□□□ -1.72
LINC00643-201ENST00000334389 SCRIBQ14160 1630 aa4.29□□□□□ -1.72
LINC00643-201ENST00000334389 PBRM1Q86U86 1689 aa4.29□□□□□ -1.72
LINC00643-201ENST00000334389 IFT140Q96RY7 1462 aa4.28□□□□□ -1.72
LINC00643-201ENST00000334389 KIAA0586Q9BVV6 1533 aa4.26□□□□□ -1.73
LINC00643-201ENST00000334389 CHD1O14646 1710 aa4.25□□□□□ -1.73
LINC00643-201ENST00000334389 DNMBPQ6XZF7 1577 aa4.24□□□□□ -1.73
LINC00643-201ENST00000334389 SYNJ1O43426 1573 aa4.23□□□□□ -1.73
LINC00643-201ENST00000334389 CFTRP13569 1480 aa4.23□□□□□ -1.73
LINC00643-201ENST00000334389 ARHGEF11O15085 1522 aa4.23□□□□□ -1.73
LINC00643-201ENST00000334389 SP7Q8TDD2 431 aaPredicted RBP4.23□□□□□ -1.73
LINC00643-201ENST00000334389 MAGI1Q96QZ7 1491 aaPredicted RBP4.21□□□□□ -1.73
LINC00643-201ENST00000334389 TOP2BQ02880 1626 aa4.21□□□□□ -1.74
LINC00643-201ENST00000334389 EIF4G3O43432 1585 aaKnown RBP4.21□□□□□ -1.74
LINC00643-201ENST00000334389 SCAF1Q9H7N4 1312 aaKnown RBP4.21□□□□□ -1.74
LINC00643-201ENST00000334389 ABCA5Q8WWZ7 1642 aa4.2□□□□□ -1.74
LINC00643-201ENST00000334389 TOP2AP11388 1531 aaKnown RBP4.18□□□□□ -1.74
LINC00643-201ENST00000334389 PPRC1Q5VV67 1664 aaKnown RBP4.17□□□□□ -1.74
LINC00643-201ENST00000334389 MAP3K4Q9Y6R4 1608 aa4.17□□□□□ -1.74
LINC00643-201ENST00000334389 CEP164Q9UPV0 1460 aa4.16□□□□□ -1.74
LINC00643-201ENST00000334389 FAM135AQ9P2D6 1515 aa4.15□□□□□ -1.74
LINC00643-201ENST00000334389 PPP6R1Q9UPN7 881 aa4.15□□□□□ -1.74
LINC00643-201ENST00000334389 ERCC6Q03468 1493 aa4.15□□□□□ -1.75
LINC00643-201ENST00000334389 ARAP1Q96P48 1450 aa4.14□□□□□ -1.75
LINC00643-201ENST00000334389 REREQ9P2R6 1566 aa4.13□□□□□ -1.75
LINC00643-201ENST00000334389 BIVM-ERCC5R4GMW8 1640 aa4.13□□□□□ -1.75
LINC00643-201ENST00000334389 DIP2BQ9P265 1576 aa4.13□□□□□ -1.75
LINC00643-201ENST00000334389 UHRF1BP1LA0JNW5 1464 aa4.13□□□□□ -1.75
LINC00643-201ENST00000334389 CFAP43Q8NDM7 1665 aa4.13□□□□□ -1.75
LINC00643-201ENST00000334389 ZNF608Q9ULD9 1512 aaPredicted RBP4.13□□□□□ -1.75
LINC00643-201ENST00000334389 CADPSQ9ULU8 1353 aa4.12□□□□□ -1.75
LINC00643-201ENST00000334389 PLPPR3Q6T4P5 718 aa4.11□□□□□ -1.75
LINC00643-201ENST00000334389 ADAMTSL3P82987 1691 aa4.1□□□□□ -1.75
LINC00643-201ENST00000334389 PCDH10Q9P2E7 1040 aa4.1□□□□□ -1.75
LINC00643-201ENST00000334389 ADRA2BP18089 450 aa4.1□□□□□ -1.75
LINC00643-201ENST00000334389 ADAMTS12P58397 1594 aa4.09□□□□□ -1.75
LINC00643-201ENST00000334389 URB2Q14146 1524 aaKnown RBP4.09□□□□□ -1.75
LINC00643-201ENST00000334389 ERICH3Q5RHP9 1530 aa4.09□□□□□ -1.76
LINC00643-201ENST00000334389 LMTK3Q96Q04 1460 aa4.08□□□□□ -1.76
LINC00643-201ENST00000334389 CFAP74Q9C0B2 1584 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms