RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 NEFLP07196 543 aa19.56■□□□□ 0.72
SYNE3-201ENST00000334258 TDRD9Q8NDG6 1382 aaKnown RBP19.56■□□□□ 0.72
SYNE3-201ENST00000334258 BIVM-ERCC5R4GMW8 1640 aa19.53■□□□□ 0.72
SYNE3-201ENST00000334258 DDX10Q13206 875 aaKnown RBP19.53■□□□□ 0.72
SYNE3-201ENST00000334258 IGF1RP08069 1367 aa19.52■□□□□ 0.72
SYNE3-201ENST00000334258 CARMIL1Q5VZK9 1371 aa19.47■□□□□ 0.71
SYNE3-201ENST00000334258 PRXQ9BXM0 1461 aa19.44■□□□□ 0.7
SYNE3-201ENST00000334258 TOPBP1Q92547 1522 aa19.44■□□□□ 0.7
SYNE3-201ENST00000334258 TRIM52Q96A61 297 aa19.43■□□□□ 0.7
SYNE3-201ENST00000334258 RBM19Q9Y4C8 960 aaKnown RBP19.43■□□□□ 0.7
SYNE3-201ENST00000334258 POLA1P09884 1462 aaPredicted RBP19.43■□□□□ 0.7
SYNE3-201ENST00000334258 CCNB3Q8WWL7 1395 aa19.42■□□□□ 0.7
SYNE3-201ENST00000334258 URB2Q14146 1524 aaKnown RBP19.41■□□□□ 0.7
SYNE3-201ENST00000334258 HIRIP3Q9BW71 556 aaPredicted RBP19.39■□□□□ 0.69
SYNE3-201ENST00000334258 ARID3CA6NKF2 412 aa19.38■□□□□ 0.69
SYNE3-201ENST00000334258 PDS5BQ9NTI5 1447 aa19.38■□□□□ 0.69
SYNE3-201ENST00000334258 SIN3AQ96ST3 1273 aa19.36■□□□□ 0.69
SYNE3-201ENST00000334258 RRBP1Q9P2E9 1410 aaKnown RBP19.36■□□□□ 0.69
SYNE3-201ENST00000334258 ARAP1Q96P48 1450 aa19.36■□□□□ 0.69
SYNE3-201ENST00000334258 RAB3GAP2Q9H2M9 1393 aa19.35■□□□□ 0.69
SYNE3-201ENST00000334258 ANP32CO43423 234 aa19.33■□□□□ 0.69
SYNE3-201ENST00000334258 FBLN2P98095 1184 aa19.32■□□□□ 0.68
SYNE3-201ENST00000334258 FAM50AQ14320 339 aaKnown RBP19.31■□□□□ 0.68
SYNE3-201ENST00000334258 KIF21AQ7Z4S6 1674 aa19.29■□□□□ 0.68
SYNE3-201ENST00000334258 DNMBPQ6XZF7 1577 aa19.29■□□□□ 0.68
SYNE3-201ENST00000334258 PRDM2Q13029 1718 aa19.29■□□□□ 0.68
SYNE3-201ENST00000334258 AQRO60306 1485 aaKnown RBP eCLIP19.29■□□□□ 0.685e-6■■□□□ 14.3
SYNE3-201ENST00000334258 LAMC3Q9Y6N6 1575 aa19.28■□□□□ 0.68
SYNE3-201ENST00000334258 PPP1R15AO75807 674 aaPredicted RBP19.24■□□□□ 0.67
SYNE3-201ENST00000334258 ARHGAP35Q9NRY4 1499 aa19.24■□□□□ 0.67
SYNE3-201ENST00000334258 ERCC6Q03468 1493 aa19.24■□□□□ 0.67
SYNE3-201ENST00000334258 ANO8Q9HCE9 1232 aaPredicted RBP19.23■□□□□ 0.67
SYNE3-201ENST00000334258 ERICH3Q5RHP9 1530 aa19.22■□□□□ 0.67
SYNE3-201ENST00000334258 SETD5Q9C0A6 1442 aa19.21■□□□□ 0.67
SYNE3-201ENST00000334258 CCER2I3L3R5 266 aa19.21■□□□□ 0.67
SYNE3-201ENST00000334258 FHOD3Q2V2M9 1422 aa19.2■□□□□ 0.66
SYNE3-201ENST00000334258 IRX6P78412 446 aaPredicted RBP19.19■□□□□ 0.66
SYNE3-201ENST00000334258 ABCA10Q8WWZ4 1543 aa19.18■□□□□ 0.66
SYNE3-201ENST00000334258 GAPVD1Q14C86 1478 aa19.18■□□□□ 0.66
SYNE3-201ENST00000334258 WDR97A6NE52 1622 aa19.18■□□□□ 0.66
SYNE3-201ENST00000334258 MAPKBP1O60336 1514 aa19.17■□□□□ 0.66
SYNE3-201ENST00000334258 CDK11AQ9UQ88 783 aaPredicted RBP19.17■□□□□ 0.66
SYNE3-201ENST00000334258 MSH5O43196 834 aa19.15■□□□□ 0.66
SYNE3-201ENST00000334258 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
SYNE3-201ENST00000334258 HNRNPUQ00839 825 aaKnown RBP eCLIP19.14■□□□□ 0.65
SYNE3-201ENST00000334258 TIMELESSQ9UNS1 1208 aa19.1■□□□□ 0.65
SYNE3-201ENST00000334258 TONSLQ96HA7 1378 aa19.06■□□□□ 0.64
SYNE3-201ENST00000334258 MRC2Q9UBG0 1479 aa19.06■□□□□ 0.64
SYNE3-201ENST00000334258 PHLDB1Q86UU1 1377 aa19.05■□□□□ 0.64
SYNE3-201ENST00000334258 CHMP7Q8WUX9 453 aaPredicted RBP19.02■□□□□ 0.64
SYNE3-201ENST00000334258 FANCIQ9NVI1 1328 aa19.02■□□□□ 0.63
SYNE3-201ENST00000334258 LRRC9Q6ZRR7 1453 aa18.97■□□□□ 0.63
SYNE3-201ENST00000334258 CCDC136Q96JN2 1154 aa18.95■□□□□ 0.62
SYNE3-201ENST00000334258 TIAM1Q13009 1591 aa18.95■□□□□ 0.62
SYNE3-201ENST00000334258 TARBP1Q13395 1621 aaKnown RBP18.95■□□□□ 0.62
SYNE3-201ENST00000334258 ABCA5Q8WWZ7 1642 aa18.91■□□□□ 0.62
SYNE3-201ENST00000334258 PPP4R2Q9NY27 417 aa18.91■□□□□ 0.62
SYNE3-201ENST00000334258 B4GALNT3Q6L9W6 998 aa18.88■□□□□ 0.61
SYNE3-201ENST00000334258 SALL2Q9Y467 1007 aaPredicted RBP18.88■□□□□ 0.61
SYNE3-201ENST00000334258 SNAPC4Q5SXM2 1469 aa18.88■□□□□ 0.61
SYNE3-201ENST00000334258 PCF11O94913 1555 aaKnown RBP18.87■□□□□ 0.61
SYNE3-201ENST00000334258 FHAD1B1AJZ9 1412 aa18.87■□□□□ 0.61
SYNE3-201ENST00000334258 FAM9BQ8IZU0 186 aa18.87■□□□□ 0.61
SYNE3-201ENST00000334258 MAP3K1Q13233 1512 aa18.86■□□□□ 0.61
SYNE3-201ENST00000334258 GRIN2BQ13224 1484 aa18.86■□□□□ 0.61
SYNE3-201ENST00000334258 MTUS2Q5JR59 1369 aa18.86■□□□□ 0.61
SYNE3-201ENST00000334258 DEKP35659 375 aaKnown RBP18.85■□□□□ 0.61
SYNE3-201ENST00000334258 CHIC2Q9UKJ5 165 aa18.85■□□□□ 0.61
SYNE3-201ENST00000334258 CUL7Q14999 1698 aa18.84■□□□□ 0.61
SYNE3-201ENST00000334258 MYT1LQ9UL68 1186 aa18.84■□□□□ 0.61
SYNE3-201ENST00000334258 IFT140Q96RY7 1462 aa18.83■□□□□ 0.6
SYNE3-201ENST00000334258 NBR1Q14596 966 aa18.82■□□□□ 0.6
SYNE3-201ENST00000334258 ERICH6BQ5W0A0 696 aa18.82■□□□□ 0.6
SYNE3-201ENST00000334258 HSPA5P11021 654 aaKnown RBP18.81■□□□□ 0.6
SYNE3-201ENST00000334258 WDR62O43379 1518 aa18.79■□□□□ 0.6
SYNE3-201ENST00000334258 CCDC184Q52MB2 194 aa18.78■□□□□ 0.6
SYNE3-201ENST00000334258 MRS2Q9HD23 443 aa18.78■□□□□ 0.6
SYNE3-201ENST00000334258 WASHC2AQ641Q2 1341 aa18.78■□□□□ 0.6
SYNE3-201ENST00000334258 PBRM1Q86U86 1689 aa18.77■□□□□ 0.59
SYNE3-201ENST00000334258 EIF4G2P78344 907 aaKnown RBP eCLIP18.76■□□□□ 0.59
SYNE3-201ENST00000334258 CCDC18Q5T9S5 1454 aa18.76■□□□□ 0.59
SYNE3-201ENST00000334258 CNGB1Q14028 1251 aaPredicted RBP18.76■□□□□ 0.59
SYNE3-201ENST00000334258 CTTNBP2Q8WZ74 1663 aa18.76■□□□□ 0.59
SYNE3-201ENST00000334258 FMN1Q68DA7 1419 aa18.76■□□□□ 0.59
SYNE3-201ENST00000334258 EIF4G3O43432 1585 aaKnown RBP18.75■□□□□ 0.59
SYNE3-201ENST00000334258 NOP58Q9Y2X3 529 aaKnown RBP18.75■□□□□ 0.59
SYNE3-201ENST00000334258 JPH4Q96JJ6 628 aa18.74■□□□□ 0.59
SYNE3-201ENST00000334258 CASKIN1Q8WXD9 1431 aa18.74■□□□□ 0.59
SYNE3-201ENST00000334258 UACAQ9BZF9 1416 aa18.72■□□□□ 0.59
SYNE3-201ENST00000334258 RRP7BPQ9NSQ0 103 aa18.72■□□□□ 0.59
SYNE3-201ENST00000334258 ZNF777Q9ULD5 760 aaPredicted RBP18.71■□□□□ 0.59
SYNE3-201ENST00000334258 ADAMTS12P58397 1594 aa18.71■□□□□ 0.59
SYNE3-201ENST00000334258 FGD6Q6ZV73 1430 aa18.7■□□□□ 0.58
SYNE3-201ENST00000334258 THOC2Q8NI27 1593 aaKnown RBP18.7■□□□□ 0.58
SYNE3-201ENST00000334258 CDK13Q14004 1512 aaKnown RBP18.69■□□□□ 0.58
SYNE3-201ENST00000334258 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.69■□□□□ 0.58
SYNE3-201ENST00000334258 PRKRIP1Q9H875 184 aaPredicted RBP18.68■□□□□ 0.58
SYNE3-201ENST00000334258 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.68■□□□□ 0.58
SYNE3-201ENST00000334258 GRIN2AQ12879 1464 aa18.68■□□□□ 0.58
SYNE3-201ENST00000334258 UBE2Q2Q8WVN8 375 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms