RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 NISCHQ9Y2I1 1504 aa27.23■■□□□ 1.95
SYNE3-201ENST00000334258 DCAF8L2P0C7V8 631 aa23.69■■□□□ 1.38
SYNE3-201ENST00000334258 SHROOM4Q9ULL8 1493 aa23.55■■□□□ 1.36
SYNE3-201ENST00000334258 SUPT5HO00267 1087 aaKnown RBP23.21■■□□□ 1.31
SYNE3-201ENST00000334258 CCDC180Q9P1Z9 1646 aa23.06■■□□□ 1.28
SYNE3-201ENST00000334258 HRCP23327 699 aa22.92■■□□□ 1.26
SYNE3-201ENST00000334258 ZCCHC6Q5VYS8 1495 aaKnown RBP22.83■■□□□ 1.25
SYNE3-201ENST00000334258 PCGF6Q9BYE7 350 aa22.72■■□□□ 1.23
SYNE3-201ENST00000334258 ABCC9O60706 1549 aa22.61■■□□□ 1.21
SYNE3-201ENST00000334258 CHIC1Q5VXU3 224 aa22.58■■□□□ 1.21
SYNE3-201ENST00000334258 PPARGC1BQ86YN6 1023 aaKnown RBP22.53■■□□□ 1.2
SYNE3-201ENST00000334258 MYO15BQ96JP2 1530 aa22.5■■□□□ 1.19
SYNE3-201ENST00000334258 PELP1Q8IZL8 1130 aaKnown RBP22.32■■□□□ 1.16
SYNE3-201ENST00000334258 LOC105371045A0A1W2PR82 267 aa22.13■■□□□ 1.13
SYNE3-201ENST00000334258 SCRIBQ14160 1630 aa22.08■■□□□ 1.12
SYNE3-201ENST00000334258 DCAF1Q9Y4B6 1507 aa21.98■■□□□ 1.11
SYNE3-201ENST00000334258 TRIM26Q12899 539 aaPredicted RBP21.96■■□□□ 1.11
SYNE3-201ENST00000334258 PABPN1Q86U42 306 aaKnown RBP eCLIP21.75■■□□□ 1.07
SYNE3-201ENST00000334258 ZEB1P37275 1124 aaPredicted RBP21.72■■□□□ 1.07
SYNE3-201ENST00000334258 MYT1Q01538 1121 aa21.64■■□□□ 1.05
SYNE3-201ENST00000334258 NACADO15069 1562 aa21.62■■□□□ 1.05
SYNE3-201ENST00000334258 CECR2Q9BXF3 1484 aa21.55■■□□□ 1.04
SYNE3-201ENST00000334258 SCAF1Q9H7N4 1312 aaKnown RBP21.55■■□□□ 1.04
SYNE3-201ENST00000334258 FAM9AQ8IZU1 332 aaPredicted RBP21.51■■□□□ 1.03
SYNE3-201ENST00000334258 EHMT2Q96KQ7 1210 aa21.49■■□□□ 1.03
SYNE3-201ENST00000334258 RB1CC1Q8TDY2 1594 aa21.48■■□□□ 1.03
SYNE3-201ENST00000334258 RSF1Q96T23 1441 aaPredicted RBP21.47■■□□□ 1.03
SYNE3-201ENST00000334258 TRIM41Q8WV44 630 aa21.45■■□□□ 1.02
SYNE3-201ENST00000334258 MROH2BQ7Z745 1585 aa21.3■■□□□ 1
SYNE3-201ENST00000334258 WIZO95785 1651 aa21.14■□□□□ 0.97
SYNE3-201ENST00000334258 CCER1Q8TC90 406 aaPredicted RBP21.14■□□□□ 0.97
SYNE3-201ENST00000334258 ACIN1Q9UKV3 1341 aaKnown RBP21.13■□□□□ 0.97
SYNE3-201ENST00000334258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.13■□□□□ 0.97
SYNE3-201ENST00000334258 UNC13AQ9UPW8 1703 aa21.11■□□□□ 0.97
SYNE3-201ENST00000334258 NEUROD1Q13562 356 aa21.1■□□□□ 0.97
SYNE3-201ENST00000334258 CENPBP07199 599 aaPredicted RBP21.02■□□□□ 0.96
SYNE3-201ENST00000334258 GTF3C3Q9Y5Q9 886 aa21.01■□□□□ 0.95
SYNE3-201ENST00000334258 DIEXFQ68CQ4 756 aaKnown RBP20.98■□□□□ 0.95
SYNE3-201ENST00000334258 BICRAQ9NZM4 1560 aa20.96■□□□□ 0.95
SYNE3-201ENST00000334258 TTBK1Q5TCY1 1321 aaPredicted RBP20.92■□□□□ 0.94
SYNE3-201ENST00000334258 BAZ1AQ9NRL2 1556 aaPredicted RBP20.9■□□□□ 0.94
SYNE3-201ENST00000334258 SMARCA4P51532 1647 aa20.82■□□□□ 0.92
SYNE3-201ENST00000334258 YTHDC1Q96MU7 727 aaKnown RBP20.73■□□□□ 0.91
SYNE3-201ENST00000334258 CCDC88BA6NC98 1476 aa20.71■□□□□ 0.91
SYNE3-201ENST00000334258 ABCC8Q09428 1581 aa20.61■□□□□ 0.89
SYNE3-201ENST00000334258 ZNF316A6NFI3 1004 aaPredicted RBP20.59■□□□□ 0.89
SYNE3-201ENST00000334258 TOP2AP11388 1531 aaKnown RBP20.59■□□□□ 0.89
SYNE3-201ENST00000334258 ATAD2BQ9ULI0 1458 aa20.53■□□□□ 0.88
SYNE3-201ENST00000334258 SMARCA2P51531 1590 aa20.53■□□□□ 0.88
SYNE3-201ENST00000334258 BAZ1BQ9UIG0 1483 aaKnown RBP20.5■□□□□ 0.87
SYNE3-201ENST00000334258 BCL11AQ9H165 835 aa20.5■□□□□ 0.87
SYNE3-201ENST00000334258 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
SYNE3-201ENST00000334258 RANGAP1P46060 587 aaPredicted RBP20.44■□□□□ 0.86
SYNE3-201ENST00000334258 MIER1Q8N108 512 aa20.43■□□□□ 0.86
SYNE3-201ENST00000334258 PRKCSHP14314 528 aaPredicted RBP20.43■□□□□ 0.86
SYNE3-201ENST00000334258 CEP162Q5TB80 1403 aa20.38■□□□□ 0.85
SYNE3-201ENST00000334258 HNRNPUL2Q1KMD3 747 aaKnown RBP20.38■□□□□ 0.85
SYNE3-201ENST00000334258 EIF4G1Q04637 1599 aaKnown RBP20.37■□□□□ 0.85
SYNE3-201ENST00000334258 SOGA1O94964 1423 aa20.35■□□□□ 0.85
SYNE3-201ENST00000334258 WRNQ14191 1432 aaPredicted RBP eCLIP20.34■□□□□ 0.85
SYNE3-201ENST00000334258 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
SYNE3-201ENST00000334258 RUSC2Q8N2Y8 1516 aa20.31■□□□□ 0.84
SYNE3-201ENST00000334258 CSRNP3Q8WYN3 585 aa20.26■□□□□ 0.83
SYNE3-201ENST00000334258 TNIKQ9UKE5 1360 aa20.24■□□□□ 0.83
SYNE3-201ENST00000334258 PEG3Q9GZU2 1588 aa20.21■□□□□ 0.83
SYNE3-201ENST00000334258 APLP2Q06481 763 aa20.15■□□□□ 0.82
SYNE3-201ENST00000334258 NCAPD3P42695 1498 aa20.12■□□□□ 0.81
SYNE3-201ENST00000334258 SYNJ1O43426 1573 aa20.07■□□□□ 0.8
SYNE3-201ENST00000334258 CC2D2AQ9P2K1 1620 aa20.07■□□□□ 0.8
SYNE3-201ENST00000334258 EEA1Q15075 1411 aa20.03■□□□□ 0.8
SYNE3-201ENST00000334258 GOLGA3Q08378 1498 aa20.01■□□□□ 0.79
SYNE3-201ENST00000334258 SUPT16HQ9Y5B9 1047 aaKnown RBP19.99■□□□□ 0.79
SYNE3-201ENST00000334258 HMGXB3Q12766 1538 aa19.93■□□□□ 0.78
SYNE3-201ENST00000334258 NESP48681 1621 aa19.93■□□□□ 0.78
SYNE3-201ENST00000334258 CLIP1P30622 1438 aa19.92■□□□□ 0.78
SYNE3-201ENST00000334258 CLSPNQ9HAW4 1339 aa19.91■□□□□ 0.78
SYNE3-201ENST00000334258 CADPSQ9ULU8 1353 aa19.87■□□□□ 0.77
SYNE3-201ENST00000334258 CFTRP13569 1480 aa19.85■□□□□ 0.77
SYNE3-201ENST00000334258 TSHZ2Q9NRE2 1034 aa19.83■□□□□ 0.76
SYNE3-201ENST00000334258 CEP164Q9UPV0 1460 aa19.82■□□□□ 0.76
SYNE3-201ENST00000334258 VPS8Q8N3P4 1428 aa19.81■□□□□ 0.76
SYNE3-201ENST00000334258 CUX1P39880 1505 aa19.81■□□□□ 0.76
SYNE3-201ENST00000334258 RAPGEF2Q9Y4G8 1499 aa19.8■□□□□ 0.76
SYNE3-201ENST00000334258 ANP32EQ9BTT0 268 aa19.78■□□□□ 0.76
SYNE3-201ENST00000334258 BCANQ96GW7 911 aa19.77■□□□□ 0.76
SYNE3-201ENST00000334258 DHX57Q6P158 1386 aaKnown RBP19.73■□□□□ 0.75
SYNE3-201ENST00000334258 TOP2BQ02880 1626 aa19.71■□□□□ 0.75
SYNE3-201ENST00000334258 ITGAEP38570 1179 aa19.7■□□□□ 0.74
SYNE3-201ENST00000334258 P3H3Q8IVL6 736 aa19.7■□□□□ 0.74
SYNE3-201ENST00000334258 ERICH6Q7L0X2 663 aa19.69■□□□□ 0.74
SYNE3-201ENST00000334258 FANCD2Q9BXW9 1451 aa19.69■□□□□ 0.74
SYNE3-201ENST00000334258 KCNH8Q96L42 1107 aa19.66■□□□□ 0.74
SYNE3-201ENST00000334258 CUX2O14529 1486 aa19.66■□□□□ 0.74
SYNE3-201ENST00000334258 RAD54L2Q9Y4B4 1467 aa19.65■□□□□ 0.74
SYNE3-201ENST00000334258 ATP1B4Q9UN42 357 aaPredicted RBP19.64■□□□□ 0.73
SYNE3-201ENST00000334258 FKBP8Q14318 412 aa19.63■□□□□ 0.73
SYNE3-201ENST00000334258 FGD5Q6ZNL6 1462 aa19.61■□□□□ 0.73
SYNE3-201ENST00000334258 KIF27Q86VH2 1401 aa19.61■□□□□ 0.73
SYNE3-201ENST00000334258 KANK4Q5T7N3 995 aaPredicted RBP19.61■□□□□ 0.73
SYNE3-201ENST00000334258 KIF21BO75037 1637 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms