RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CARMIL1Q5VZK9 1371 aa20.1■□□□□ 0.81
TCOF1-201ENST00000323668 IRX6P78412 446 aaPredicted RBP20.1■□□□□ 0.81
TCOF1-201ENST00000323668 ANP32AP39687 249 aaKnown RBP20.1■□□□□ 0.81
TCOF1-201ENST00000323668 FHAD1B1AJZ9 1412 aa20.09■□□□□ 0.81
TCOF1-201ENST00000323668 SMARCA2P51531 1590 aa20.09■□□□□ 0.81
TCOF1-201ENST00000323668 SETD5Q9C0A6 1442 aa20.08■□□□□ 0.81
TCOF1-201ENST00000323668 CUX2O14529 1486 aa20.07■□□□□ 0.8
TCOF1-201ENST00000323668 ANP32EQ9BTT0 268 aa20.07■□□□□ 0.8
TCOF1-201ENST00000323668 DHX57Q6P158 1386 aaKnown RBP20.05■□□□□ 0.8
TCOF1-201ENST00000323668 RAB3GAP2Q9H2M9 1393 aa20.05■□□□□ 0.8
TCOF1-201ENST00000323668 CCER2I3L3R5 266 aa20■□□□□ 0.79
TCOF1-201ENST00000323668 TMC1Q8TDI8 760 aa20■□□□□ 0.79
TCOF1-201ENST00000323668 ATAD2BQ9ULI0 1458 aa20■□□□□ 0.79
TCOF1-201ENST00000323668 CCDC136Q96JN2 1154 aa19.99■□□□□ 0.79
TCOF1-201ENST00000323668 SLC4A1APQ9BWU0 796 aaKnown RBP19.99■□□□□ 0.79
TCOF1-201ENST00000323668 NPM2Q86SE8 214 aaKnown RBP19.92■□□□□ 0.78
TCOF1-201ENST00000323668 PPP1R15AO75807 674 aaPredicted RBP19.91■□□□□ 0.78
TCOF1-201ENST00000323668 SALL2Q9Y467 1007 aaPredicted RBP19.88■□□□□ 0.77
TCOF1-201ENST00000323668 ARHGAP35Q9NRY4 1499 aa19.88■□□□□ 0.77
TCOF1-201ENST00000323668 TSHZ2Q9NRE2 1034 aa19.87■□□□□ 0.77
TCOF1-201ENST00000323668 TSPY4P0CV99 314 aa19.87■□□□□ 0.77
TCOF1-201ENST00000323668 TSPY10P0CW01 314 aa19.87■□□□□ 0.77
TCOF1-201ENST00000323668 KDM2AQ9Y2K7 1162 aa19.86■□□□□ 0.77
TCOF1-201ENST00000323668 PPP4R2Q9NY27 417 aa19.84■□□□□ 0.77
TCOF1-201ENST00000323668 ZBTB47Q9UFB7 747 aaPredicted RBP19.83■□□□□ 0.76
TCOF1-201ENST00000323668 KCNH8Q96L42 1107 aa19.81■□□□□ 0.76
TCOF1-201ENST00000323668 RBM19Q9Y4C8 960 aaKnown RBP19.81■□□□□ 0.76
TCOF1-201ENST00000323668 KIF21BO75037 1637 aa19.81■□□□□ 0.76
TCOF1-201ENST00000323668 NBR1Q14596 966 aa19.79■□□□□ 0.76
TCOF1-201ENST00000323668 HSPA5P11021 654 aaKnown RBP19.77■□□□□ 0.76
TCOF1-201ENST00000323668 CANXP27824 592 aaKnown RBP19.76■□□□□ 0.75
TCOF1-201ENST00000323668 CFDP1Q9UEE9 299 aaPredicted RBP19.76■□□□□ 0.75
TCOF1-201ENST00000323668 FMN1Q68DA7 1419 aa19.74■□□□□ 0.75
TCOF1-201ENST00000323668 CHMP7Q8WUX9 453 aaPredicted RBP19.73■□□□□ 0.75
TCOF1-201ENST00000323668 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.72■□□□□ 0.753e-8■■■■□ 21
TCOF1-201ENST00000323668 CADPSQ9ULU8 1353 aa19.72■□□□□ 0.75
TCOF1-201ENST00000323668 B4GALNT3Q6L9W6 998 aa19.7■□□□□ 0.74
TCOF1-201ENST00000323668 FHOD3Q2V2M9 1422 aa19.7■□□□□ 0.74
TCOF1-201ENST00000323668 SENP3-EIF4A1A0A087X0R7 540 aa19.69■□□□□ 0.74
TCOF1-201ENST00000323668 PLEKHD1A6NEE1 506 aa19.69■□□□□ 0.74
TCOF1-201ENST00000323668 SYNJ1O43426 1573 aa19.68■□□□□ 0.74
TCOF1-201ENST00000323668 CARD11Q9BXL7 1154 aa19.68■□□□□ 0.74
TCOF1-201ENST00000323668 ERICH6BQ5W0A0 696 aa19.67■□□□□ 0.74
TCOF1-201ENST00000323668 IGF1RP08069 1367 aa19.66■□□□□ 0.74
TCOF1-201ENST00000323668 MPHOSPH9Q99550 1183 aa19.64■□□□□ 0.74
TCOF1-201ENST00000323668 FOXD1Q16676 465 aa19.63■□□□□ 0.73
TCOF1-201ENST00000323668 WDR43Q15061 677 aaKnown RBP eCLIP19.62■□□□□ 0.737e-6■■■■■ 27.3
TCOF1-201ENST00000323668 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.62■□□□□ 0.73
TCOF1-201ENST00000323668 TDRD9Q8NDG6 1382 aaKnown RBP19.62■□□□□ 0.73
TCOF1-201ENST00000323668 ARAP1Q96P48 1450 aa19.61■□□□□ 0.73
TCOF1-201ENST00000323668 RRBP1Q9P2E9 1410 aaKnown RBP19.61■□□□□ 0.73
TCOF1-201ENST00000323668 RGL3Q3MIN7 710 aa19.6■□□□□ 0.73
TCOF1-201ENST00000323668 EIF4G1Q04637 1599 aaKnown RBP19.6■□□□□ 0.73
TCOF1-201ENST00000323668 ERICH3Q5RHP9 1530 aa19.59■□□□□ 0.73
TCOF1-201ENST00000323668 L3MBTL2Q969R5 705 aa19.59■□□□□ 0.73
TCOF1-201ENST00000323668 PRXQ9BXM0 1461 aa19.57■□□□□ 0.72
TCOF1-201ENST00000323668 PHLDB1Q86UU1 1377 aa19.55■□□□□ 0.72
TCOF1-201ENST00000323668 NOP58Q9Y2X3 529 aaKnown RBP19.54■□□□□ 0.72
TCOF1-201ENST00000323668 LRRC9Q6ZRR7 1453 aa19.51■□□□□ 0.71
TCOF1-201ENST00000323668 NCAPD3P42695 1498 aa19.5■□□□□ 0.71
TCOF1-201ENST00000323668 PKD2Q13563 968 aa19.49■□□□□ 0.71
TCOF1-201ENST00000323668 CCDC18Q5T9S5 1454 aa19.48■□□□□ 0.71
TCOF1-201ENST00000323668 CHGAP10645 457 aaKnown RBP19.48■□□□□ 0.71
TCOF1-201ENST00000323668 DCAF11Q8TEB1 546 aa19.48■□□□□ 0.71
TCOF1-201ENST00000323668 UPF2Q9HAU5 1272 aaKnown RBP19.48■□□□□ 0.71
TCOF1-201ENST00000323668 TOP2BQ02880 1626 aa19.46■□□□□ 0.71
TCOF1-201ENST00000323668 FGD5Q6ZNL6 1462 aa19.46■□□□□ 0.71
TCOF1-201ENST00000323668 NEFMP07197 916 aa19.45■□□□□ 0.7
TCOF1-201ENST00000323668 DDRGK1Q96HY6 314 aa19.45■□□□□ 0.7
TCOF1-201ENST00000323668 BCL11AQ9H165 835 aa19.44■□□□□ 0.7
TCOF1-201ENST00000323668 KNSTRNQ9Y448 316 aa19.44■□□□□ 0.7
TCOF1-201ENST00000323668 PRKRIP1Q9H875 184 aaPredicted RBP19.43■□□□□ 0.7
TCOF1-201ENST00000323668 PDS5BQ9NTI5 1447 aa19.43■□□□□ 0.7
TCOF1-201ENST00000323668 FANCD2Q9BXW9 1451 aa19.42■□□□□ 0.7
TCOF1-201ENST00000323668 FGD6Q6ZV73 1430 aa19.42■□□□□ 0.7
TCOF1-201ENST00000323668 CDCA8Q53HL2 280 aa19.4■□□□□ 0.7
TCOF1-201ENST00000323668 UACAQ9BZF9 1416 aa19.39■□□□□ 0.69
TCOF1-201ENST00000323668 NUDCQ9Y266 331 aa19.39■□□□□ 0.69
TCOF1-201ENST00000323668 CFTRP13569 1480 aa19.38■□□□□ 0.69
TCOF1-201ENST00000323668 PPM1GO15355 546 aaPredicted RBP19.38■□□□□ 0.69
TCOF1-201ENST00000323668 CC2D1BQ5T0F9 858 aaKnown RBP19.38■□□□□ 0.69
TCOF1-201ENST00000323668 DEKP35659 375 aaKnown RBP19.34■□□□□ 0.69
TCOF1-201ENST00000323668 NUP155O75694 1391 aa19.34■□□□□ 0.69
TCOF1-201ENST00000323668 ZBED9Q6R2W3 1325 aa19.34■□□□□ 0.69
TCOF1-201ENST00000323668 RALBP1Q15311 655 aa19.34■□□□□ 0.69
TCOF1-201ENST00000323668 CASKIN1Q8WXD9 1431 aa19.33■□□□□ 0.69
TCOF1-201ENST00000323668 CUX1P39880 1505 aa19.33■□□□□ 0.69
TCOF1-201ENST00000323668 LAS1LQ9Y4W2 734 aaKnown RBP19.33■□□□□ 0.68
TCOF1-201ENST00000323668 ANKRD30AQ9BXX3 1397 aa19.33■□□□□ 0.68
TCOF1-201ENST00000323668 TMF1P82094 1093 aa19.32■□□□□ 0.68
TCOF1-201ENST00000323668 MYOM3Q5VTT5 1437 aa19.32■□□□□ 0.68
TCOF1-201ENST00000323668 RAD54L2Q9Y4B4 1467 aa19.32■□□□□ 0.68
TCOF1-201ENST00000323668 RCAN3Q9UKA8 241 aa19.31■□□□□ 0.68
TCOF1-201ENST00000323668 EIF5BO60841 1220 aaKnown RBP19.31■□□□□ 0.68
TCOF1-201ENST00000323668 KTN1Q86UP2 1357 aaKnown RBP19.29■□□□□ 0.68
TCOF1-201ENST00000323668 FANCIQ9NVI1 1328 aa19.28■□□□□ 0.68
TCOF1-201ENST00000323668 WASHC2AQ641Q2 1341 aa19.27■□□□□ 0.68
TCOF1-201ENST00000323668 TIAM1Q13009 1591 aa19.27■□□□□ 0.67
TCOF1-201ENST00000323668 ROCK2O75116 1388 aaKnown RBP19.26■□□□□ 0.67
TCOF1-201ENST00000323668 FYCO1Q9BQS8 1478 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms