RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 NISCHQ9Y2I1 1504 aa26.8■■□□□ 1.88
TCOF1-201ENST00000323668 DCAF8L2P0C7V8 631 aa25.13■■□□□ 1.61
TCOF1-201ENST00000323668 SUPT5HO00267 1087 aaKnown RBP24.88■■□□□ 1.57
TCOF1-201ENST00000323668 SHROOM4Q9ULL8 1493 aa24.7■■□□□ 1.54
TCOF1-201ENST00000323668 PCGF6Q9BYE7 350 aa23.66■■□□□ 1.38
TCOF1-201ENST00000323668 EHMT2Q96KQ7 1210 aa23.39■■□□□ 1.34
TCOF1-201ENST00000323668 FAM9AQ8IZU1 332 aaPredicted RBP23.22■■□□□ 1.31
TCOF1-201ENST00000323668 CHIC1Q5VXU3 224 aa23.2■■□□□ 1.3
TCOF1-201ENST00000323668 HRCP23327 699 aa23.15■■□□□ 1.3
TCOF1-201ENST00000323668 TRIM41Q8WV44 630 aa23.08■■□□□ 1.29
TCOF1-201ENST00000323668 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
TCOF1-201ENST00000323668 TRIM26Q12899 539 aaPredicted RBP22.87■■□□□ 1.25
TCOF1-201ENST00000323668 LOC105371045A0A1W2PR82 267 aa22.86■■□□□ 1.25
TCOF1-201ENST00000323668 TTBK1Q5TCY1 1321 aaPredicted RBP22.68■■□□□ 1.22
TCOF1-201ENST00000323668 CCER1Q8TC90 406 aaPredicted RBP22.66■■□□□ 1.22
TCOF1-201ENST00000323668 APLP2Q06481 763 aa22.64■■□□□ 1.21
TCOF1-201ENST00000323668 PPARGC1BQ86YN6 1023 aaKnown RBP22.63■■□□□ 1.21
TCOF1-201ENST00000323668 CENPBP07199 599 aaPredicted RBP22.49■■□□□ 1.19
TCOF1-201ENST00000323668 PELP1Q8IZL8 1130 aaKnown RBP22.46■■□□□ 1.19
TCOF1-201ENST00000323668 ZCCHC6Q5VYS8 1495 aaKnown RBP22.43■■□□□ 1.18
TCOF1-201ENST00000323668 UBTFP17480 764 aaKnown RBP22.39■■□□□ 1.17
TCOF1-201ENST00000323668 RANGAP1P46060 587 aaPredicted RBP22.21■■□□□ 1.15
TCOF1-201ENST00000323668 DCAF1Q9Y4B6 1507 aa22.05■■□□□ 1.12
TCOF1-201ENST00000323668 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.04■■□□□ 1.12
TCOF1-201ENST00000323668 CCDC180Q9P1Z9 1646 aa22.03■■□□□ 1.12
TCOF1-201ENST00000323668 MYO15BQ96JP2 1530 aa22.01■■□□□ 1.11
TCOF1-201ENST00000323668 YTHDC1Q96MU7 727 aaKnown RBP22.01■■□□□ 1.11
TCOF1-201ENST00000323668 DIEXFQ68CQ4 756 aaKnown RBP21.86■■□□□ 1.09
TCOF1-201ENST00000323668 HNRNPUL2Q1KMD3 747 aaKnown RBP21.83■■□□□ 1.09
TCOF1-201ENST00000323668 ABCC9O60706 1549 aa21.81■■□□□ 1.08
TCOF1-201ENST00000323668 MYT1Q01538 1121 aa21.75■■□□□ 1.07
TCOF1-201ENST00000323668 ATP1B4Q9UN42 357 aaPredicted RBP21.71■■□□□ 1.07
TCOF1-201ENST00000323668 SCRIBQ14160 1630 aa21.63■■□□□ 1.05
TCOF1-201ENST00000323668 GTF3C3Q9Y5Q9 886 aa21.54■■□□□ 1.04
TCOF1-201ENST00000323668 ITGAEP38570 1179 aa21.54■■□□□ 1.04
TCOF1-201ENST00000323668 RSF1Q96T23 1441 aaPredicted RBP21.53■■□□□ 1.04
TCOF1-201ENST00000323668 CSRNP3Q8WYN3 585 aa21.53■■□□□ 1.04
TCOF1-201ENST00000323668 ACIN1Q9UKV3 1341 aaKnown RBP21.51■■□□□ 1.03
TCOF1-201ENST00000323668 NEFLP07196 543 aa21.5■■□□□ 1.03
TCOF1-201ENST00000323668 ZNF316A6NFI3 1004 aaPredicted RBP21.48■■□□□ 1.03
TCOF1-201ENST00000323668 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
TCOF1-201ENST00000323668 ERICH6Q7L0X2 663 aa21.3■■□□□ 1
TCOF1-201ENST00000323668 SCAF1Q9H7N4 1312 aaKnown RBP21.27■■□□□ 1
TCOF1-201ENST00000323668 NEUROD1Q13562 356 aa21.21■□□□□ 0.99
TCOF1-201ENST00000323668 RB1CC1Q8TDY2 1594 aa21.14■□□□□ 0.97
TCOF1-201ENST00000323668 FAM50AQ14320 339 aaKnown RBP21.1■□□□□ 0.97
TCOF1-201ENST00000323668 CEP162Q5TB80 1403 aa21.03■□□□□ 0.96
TCOF1-201ENST00000323668 CECR2Q9BXF3 1484 aa21.01■□□□□ 0.95
TCOF1-201ENST00000323668 NACADO15069 1562 aa21■□□□□ 0.95
TCOF1-201ENST00000323668 EEA1Q15075 1411 aa20.99■□□□□ 0.95
TCOF1-201ENST00000323668 TNIKQ9UKE5 1360 aa20.94■□□□□ 0.94
TCOF1-201ENST00000323668 MIER1Q8N108 512 aa20.91■□□□□ 0.94
TCOF1-201ENST00000323668 CLIP1P30622 1438 aa20.91■□□□□ 0.94
TCOF1-201ENST00000323668 GOLGA3Q08378 1498 aa20.87■□□□□ 0.93
TCOF1-201ENST00000323668 BCANQ96GW7 911 aa20.87■□□□□ 0.93
TCOF1-201ENST00000323668 ANP32CO43423 234 aa20.86■□□□□ 0.93
TCOF1-201ENST00000323668 CLSPNQ9HAW4 1339 aa20.84■□□□□ 0.93
TCOF1-201ENST00000323668 BAZ1AQ9NRL2 1556 aaPredicted RBP20.82■□□□□ 0.92
TCOF1-201ENST00000323668 MROH2BQ7Z745 1585 aa20.82■□□□□ 0.92
TCOF1-201ENST00000323668 POLR3GLQ9BT43 218 aa20.8■□□□□ 0.92
TCOF1-201ENST00000323668 WRNQ14191 1432 aaPredicted RBP eCLIP20.8■□□□□ 0.92
TCOF1-201ENST00000323668 P3H3Q8IVL6 736 aa20.78■□□□□ 0.92
TCOF1-201ENST00000323668 TRIM52Q96A61 297 aa20.75■□□□□ 0.91
TCOF1-201ENST00000323668 SOGA1O94964 1423 aa20.72■□□□□ 0.91
TCOF1-201ENST00000323668 CNGB1Q14028 1251 aaPredicted RBP20.71■□□□□ 0.91
TCOF1-201ENST00000323668 CEP164Q9UPV0 1460 aa20.69■□□□□ 0.9
TCOF1-201ENST00000323668 DDX10Q13206 875 aaKnown RBP20.65■□□□□ 0.9
TCOF1-201ENST00000323668 CCDC88BA6NC98 1476 aa20.62■□□□□ 0.89
TCOF1-201ENST00000323668 FKBP8Q14318 412 aa20.59■□□□□ 0.89
TCOF1-201ENST00000323668 ABCC8Q09428 1581 aa20.57■□□□□ 0.88
TCOF1-201ENST00000323668 CDK11AQ9UQ88 783 aaPredicted RBP20.56■□□□□ 0.88
TCOF1-201ENST00000323668 WIZO95785 1651 aa20.54■□□□□ 0.88
TCOF1-201ENST00000323668 TONSLQ96HA7 1378 aa20.54■□□□□ 0.88
TCOF1-201ENST00000323668 BAZ1BQ9UIG0 1483 aaKnown RBP20.5■□□□□ 0.87
TCOF1-201ENST00000323668 VPS8Q8N3P4 1428 aa20.45■□□□□ 0.86
TCOF1-201ENST00000323668 KIF27Q86VH2 1401 aa20.42■□□□□ 0.86
TCOF1-201ENST00000323668 TOP2AP11388 1531 aaKnown RBP20.41■□□□□ 0.86
TCOF1-201ENST00000323668 ZNF326Q5BKZ1 582 aaKnown RBP20.41■□□□□ 0.86
TCOF1-201ENST00000323668 HNRNPUQ00839 825 aaKnown RBP eCLIP20.4■□□□□ 0.86
TCOF1-201ENST00000323668 DAXXQ9UER7 740 aaPredicted RBP20.38■□□□□ 0.85
TCOF1-201ENST00000323668 HIRIP3Q9BW71 556 aaPredicted RBP20.37■□□□□ 0.85
TCOF1-201ENST00000323668 ARID3CA6NKF2 412 aa20.36■□□□□ 0.85
TCOF1-201ENST00000323668 RTL5Q5HYW3 569 aaPredicted RBP20.33■□□□□ 0.85
TCOF1-201ENST00000323668 CCNB3Q8WWL7 1395 aa20.32■□□□□ 0.84
TCOF1-201ENST00000323668 MTUS2Q5JR59 1369 aa20.31■□□□□ 0.84
TCOF1-201ENST00000323668 KANK4Q5T7N3 995 aaPredicted RBP20.27■□□□□ 0.84
TCOF1-201ENST00000323668 SUPT16HQ9Y5B9 1047 aaKnown RBP20.27■□□□□ 0.84
TCOF1-201ENST00000323668 CHIC2Q9UKJ5 165 aa20.27■□□□□ 0.84
TCOF1-201ENST00000323668 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
TCOF1-201ENST00000323668 SIN3AQ96ST3 1273 aa20.24■□□□□ 0.83
TCOF1-201ENST00000323668 FAM9BQ8IZU0 186 aa20.23■□□□□ 0.83
TCOF1-201ENST00000323668 MYT1LQ9UL68 1186 aa20.23■□□□□ 0.83
TCOF1-201ENST00000323668 SMARCA4P51532 1647 aa20.17■□□□□ 0.82
TCOF1-201ENST00000323668 ZNF777Q9ULD5 760 aaPredicted RBP20.16■□□□□ 0.82
TCOF1-201ENST00000323668 FBLN2P98095 1184 aa20.15■□□□□ 0.82
TCOF1-201ENST00000323668 EIF4G2P78344 907 aaKnown RBP eCLIP20.15■□□□□ 0.82
TCOF1-201ENST00000323668 TIMELESSQ9UNS1 1208 aa20.14■□□□□ 0.82
TCOF1-201ENST00000323668 RAPGEF2Q9Y4G8 1499 aa20.14■□□□□ 0.81
TCOF1-201ENST00000323668 MRS2Q9HD23 443 aa20.14■□□□□ 0.81
TCOF1-201ENST00000323668 RRP7BPQ9NSQ0 103 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms