RNA–Protein interactions for RNA: ENST00000321897.9

VARS2-201, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best) BASIC

Gene VARS2, Length 4,073 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-201ENST00000321897 VPS8Q8N3P4 1428 aa21.07■□□□□ 0.96
VARS2-201ENST00000321897 KCNH8Q96L42 1107 aa21.07■□□□□ 0.96
VARS2-201ENST00000321897 DAXXQ9UER7 740 aaPredicted RBP21.07■□□□□ 0.96
VARS2-201ENST00000321897 KDM2AQ9Y2K7 1162 aa21.05■□□□□ 0.96
VARS2-201ENST00000321897 NPM2Q86SE8 214 aaKnown RBP21.04■□□□□ 0.96
VARS2-201ENST00000321897 TOP2AP11388 1531 aaKnown RBP21.03■□□□□ 0.96
VARS2-201ENST00000321897 CUX2O14529 1486 aa21.03■□□□□ 0.96
VARS2-201ENST00000321897 CCNB3Q8WWL7 1395 aa21.01■□□□□ 0.95
VARS2-201ENST00000321897 EIF5BO60841 1220 aaKnown RBP21■□□□□ 0.95
VARS2-201ENST00000321897 FOXD1Q16676 465 aa20.99■□□□□ 0.95
VARS2-201ENST00000321897 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.98■□□□□ 0.951e-7■■□□□ 14
VARS2-201ENST00000321897 CARMIL1Q5VZK9 1371 aa20.97■□□□□ 0.95
VARS2-201ENST00000321897 SENP3Q9H4L4 574 aaPredicted RBP20.97■□□□□ 0.95
VARS2-201ENST00000321897 RBM19Q9Y4C8 960 aaKnown RBP20.95■□□□□ 0.94
VARS2-201ENST00000321897 SMARCA4P51532 1647 aa20.94■□□□□ 0.94
VARS2-201ENST00000321897 MRS2Q9HD23 443 aa20.92■□□□□ 0.94
VARS2-201ENST00000321897 RTN4Q9NQC3 1192 aaKnown RBP20.89■□□□□ 0.94
VARS2-201ENST00000321897 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.93
VARS2-201ENST00000321897 TDRD9Q8NDG6 1382 aaKnown RBP20.88■□□□□ 0.93
VARS2-201ENST00000321897 ANP32AP39687 249 aaKnown RBP20.87■□□□□ 0.93
VARS2-201ENST00000321897 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
VARS2-201ENST00000321897 RAB3GAP2Q9H2M9 1393 aa20.86■□□□□ 0.93
VARS2-201ENST00000321897 CHMP7Q8WUX9 453 aaPredicted RBP20.85■□□□□ 0.93
VARS2-201ENST00000321897 RGL3Q3MIN7 710 aa20.83■□□□□ 0.93
VARS2-201ENST00000321897 EIF4G2P78344 907 aaKnown RBP eCLIP20.8■□□□□ 0.92
VARS2-201ENST00000321897 DHX57Q6P158 1386 aaKnown RBP20.76■□□□□ 0.91
VARS2-201ENST00000321897 FHOD3Q2V2M9 1422 aa20.75■□□□□ 0.91
VARS2-201ENST00000321897 TMC1Q8TDI8 760 aa20.73■□□□□ 0.91
VARS2-201ENST00000321897 CHGAP10645 457 aaKnown RBP20.72■□□□□ 0.91
VARS2-201ENST00000321897 DEKP35659 375 aaKnown RBP20.7■□□□□ 0.9
VARS2-201ENST00000321897 CFDP1Q9UEE9 299 aaPredicted RBP20.69■□□□□ 0.9
VARS2-201ENST00000321897 ZBTB47Q9UFB7 747 aaPredicted RBP20.69■□□□□ 0.9
VARS2-201ENST00000321897 SETD5Q9C0A6 1442 aa20.69■□□□□ 0.9
VARS2-201ENST00000321897 TSPY4P0CV99 314 aa20.68■□□□□ 0.9
VARS2-201ENST00000321897 TSPY10P0CW01 314 aa20.68■□□□□ 0.9
VARS2-201ENST00000321897 EIF4G1Q04637 1599 aaKnown RBP20.67■□□□□ 0.9
VARS2-201ENST00000321897 B4GALNT3Q6L9W6 998 aa20.66■□□□□ 0.9
VARS2-201ENST00000321897 CCDC136Q96JN2 1154 aa20.66■□□□□ 0.9
VARS2-201ENST00000321897 HSPA5P11021 654 aaKnown RBP20.61■□□□□ 0.89
VARS2-201ENST00000321897 SYNJ1O43426 1573 aa20.6■□□□□ 0.89
VARS2-201ENST00000321897 PPP1R15AO75807 674 aaPredicted RBP20.59■□□□□ 0.89
VARS2-201ENST00000321897 FHAD1B1AJZ9 1412 aa20.58■□□□□ 0.88
VARS2-201ENST00000321897 CADPSQ9ULU8 1353 aa20.58■□□□□ 0.88
VARS2-201ENST00000321897 ARXQ96QS3 562 aa20.57■□□□□ 0.88
VARS2-201ENST00000321897 PLEKHD1A6NEE1 506 aa20.56■□□□□ 0.88
VARS2-201ENST00000321897 IGF1RP08069 1367 aa20.54■□□□□ 0.88
VARS2-201ENST00000321897 LAS1LQ9Y4W2 734 aaKnown RBP20.54■□□□□ 0.88
VARS2-201ENST00000321897 KIF21BO75037 1637 aa20.53■□□□□ 0.88
VARS2-201ENST00000321897 CARD11Q9BXL7 1154 aa20.52■□□□□ 0.88
VARS2-201ENST00000321897 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.52■□□□□ 0.88
VARS2-201ENST00000321897 ARAP1Q96P48 1450 aa20.51■□□□□ 0.87
VARS2-201ENST00000321897 ARHGAP35Q9NRY4 1499 aa20.51■□□□□ 0.87
VARS2-201ENST00000321897 RAD54L2Q9Y4B4 1467 aa20.51■□□□□ 0.87
VARS2-201ENST00000321897 L3MBTL2Q969R5 705 aa20.5■□□□□ 0.87
VARS2-201ENST00000321897 NOP58Q9Y2X3 529 aaKnown RBP20.49■□□□□ 0.87
VARS2-201ENST00000321897 PHLDB1Q86UU1 1377 aa20.48■□□□□ 0.87
VARS2-201ENST00000321897 PLPPR3Q6T4P5 718 aa20.48■□□□□ 0.87
VARS2-201ENST00000321897 MPHOSPH9Q99550 1183 aa20.48■□□□□ 0.87
VARS2-201ENST00000321897 CANXP27824 592 aaKnown RBP20.48■□□□□ 0.87
VARS2-201ENST00000321897 DNAJC5BQ9UF47 199 aa20.47■□□□□ 0.87
VARS2-201ENST00000321897 DCAF11Q8TEB1 546 aa20.47■□□□□ 0.87
VARS2-201ENST00000321897 PKD2Q13563 968 aa20.43■□□□□ 0.86
VARS2-201ENST00000321897 CC2D1BQ5T0F9 858 aaKnown RBP20.42■□□□□ 0.86
VARS2-201ENST00000321897 PPP4R2Q9NY27 417 aa20.4■□□□□ 0.86
VARS2-201ENST00000321897 ZNF644Q9H582 1327 aaPredicted RBP20.4■□□□□ 0.86
VARS2-201ENST00000321897 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
VARS2-201ENST00000321897 NEFMP07197 916 aa20.36■□□□□ 0.85
VARS2-201ENST00000321897 FANCD2Q9BXW9 1451 aa20.35■□□□□ 0.85
VARS2-201ENST00000321897 TNNT2P45379 298 aaPredicted RBP20.33■□□□□ 0.85
VARS2-201ENST00000321897 NEUROD2Q15784 382 aa20.32■□□□□ 0.84
VARS2-201ENST00000321897 HNRNPMP52272 730 aaKnown RBP eCLIP20.3■□□□□ 0.84
VARS2-201ENST00000321897 NESP48681 1621 aa20.29■□□□□ 0.84
VARS2-201ENST00000321897 FMN1Q68DA7 1419 aa20.29■□□□□ 0.84
VARS2-201ENST00000321897 WDR43Q15061 677 aaKnown RBP eCLIP20.29■□□□□ 0.84
VARS2-201ENST00000321897 SLC24A1O60721 1099 aa20.28■□□□□ 0.84
VARS2-201ENST00000321897 ERCC6Q03468 1493 aa20.28■□□□□ 0.84
VARS2-201ENST00000321897 CCER2I3L3R5 266 aa20.28■□□□□ 0.84
VARS2-201ENST00000321897 TIMELESSQ9UNS1 1208 aa20.27■□□□□ 0.84
VARS2-201ENST00000321897 CUX1P39880 1505 aa20.23■□□□□ 0.83
VARS2-201ENST00000321897 PRXQ9BXM0 1461 aa20.22■□□□□ 0.83
VARS2-201ENST00000321897 ANO8Q9HCE9 1232 aaPredicted RBP20.22■□□□□ 0.83
VARS2-201ENST00000321897 NUP155O75694 1391 aa20.22■□□□□ 0.83
VARS2-201ENST00000321897 PDS5BQ9NTI5 1447 aa20.2■□□□□ 0.82
VARS2-201ENST00000321897 NCAPD3P42695 1498 aa20.2■□□□□ 0.82
VARS2-201ENST00000321897 BICRAQ9NZM4 1560 aa20.19■□□□□ 0.82
VARS2-201ENST00000321897 STAG3Q9UJ98 1225 aa20.18■□□□□ 0.82
VARS2-201ENST00000321897 LRRC9Q6ZRR7 1453 aa20.17■□□□□ 0.82
VARS2-201ENST00000321897 CCDC18Q5T9S5 1454 aa20.17■□□□□ 0.82
VARS2-201ENST00000321897 PLEKHG5O94827 1062 aa20.16■□□□□ 0.82
VARS2-201ENST00000321897 CCDC184Q52MB2 194 aa20.16■□□□□ 0.82
VARS2-201ENST00000321897 NPM1P06748 294 aaKnown RBP eCLIP20.16■□□□□ 0.82
VARS2-201ENST00000321897 AQRO60306 1485 aaKnown RBP eCLIP20.16■□□□□ 0.824e-6■■■■□ 23.2
VARS2-201ENST00000321897 MSH5O43196 834 aa20.15■□□□□ 0.82
VARS2-201ENST00000321897 SAFB2Q14151 953 aaKnown RBP eCLIP20.15■□□□□ 0.82
VARS2-201ENST00000321897 ST20-MTHFSA0A0A6YYL1 179 aa20.15■□□□□ 0.82
VARS2-201ENST00000321897 JPH4Q96JJ6 628 aa20.15■□□□□ 0.82
VARS2-201ENST00000321897 PRKCSHP14314 528 aaPredicted RBP20.14■□□□□ 0.82
VARS2-201ENST00000321897 KNSTRNQ9Y448 316 aa20.14■□□□□ 0.81
VARS2-201ENST00000321897 RGS3P49796 1198 aa20.13■□□□□ 0.81
VARS2-201ENST00000321897 CFTRP13569 1480 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms