RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 FAM50AQ14320 339 aaKnown RBP22.8■■□□□ 1.24
SHROOM1-201ENST00000319854 FHOD3Q2V2M9 1422 aa22.75■■□□□ 1.23
SHROOM1-201ENST00000319854 CCNB3Q8WWL7 1395 aa22.73■■□□□ 1.23
SHROOM1-201ENST00000319854 DNMBPQ6XZF7 1577 aa22.72■■□□□ 1.23
SHROOM1-201ENST00000319854 URB2Q14146 1524 aaKnown RBP22.69■■□□□ 1.22
SHROOM1-201ENST00000319854 DHX57Q6P158 1386 aaKnown RBP22.67■■□□□ 1.22
SHROOM1-201ENST00000319854 ABCA10Q8WWZ4 1543 aa22.65■■□□□ 1.22
SHROOM1-201ENST00000319854 ARID3CA6NKF2 412 aa22.64■■□□□ 1.21
SHROOM1-201ENST00000319854 RRBP1Q9P2E9 1410 aaKnown RBP22.62■■□□□ 1.21
SHROOM1-201ENST00000319854 PHLDB1Q86UU1 1377 aa22.61■■□□□ 1.21
SHROOM1-201ENST00000319854 PDS5BQ9NTI5 1447 aa22.6■■□□□ 1.21
SHROOM1-201ENST00000319854 TIAM1Q13009 1591 aa22.56■■□□□ 1.2
SHROOM1-201ENST00000319854 FHAD1B1AJZ9 1412 aa22.56■■□□□ 1.2
SHROOM1-201ENST00000319854 LRRC9Q6ZRR7 1453 aa22.55■■□□□ 1.2
SHROOM1-201ENST00000319854 LAMC3Q9Y6N6 1575 aa22.54■■□□□ 1.2
SHROOM1-201ENST00000319854 SUPT16HQ9Y5B9 1047 aaKnown RBP22.54■■□□□ 1.2
SHROOM1-201ENST00000319854 RAB3GAP2Q9H2M9 1393 aa22.53■■□□□ 1.2
SHROOM1-201ENST00000319854 GAPVD1Q14C86 1478 aa22.53■■□□□ 1.2
SHROOM1-201ENST00000319854 PCF11O94913 1555 aaKnown RBP22.53■■□□□ 1.2
SHROOM1-201ENST00000319854 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.19
SHROOM1-201ENST00000319854 KIF21AQ7Z4S6 1674 aa22.47■■□□□ 1.19
SHROOM1-201ENST00000319854 SIN3AQ96ST3 1273 aa22.46■■□□□ 1.19
SHROOM1-201ENST00000319854 TSHZ2Q9NRE2 1034 aa22.44■■□□□ 1.18
SHROOM1-201ENST00000319854 MTUS2Q5JR59 1369 aa22.44■■□□□ 1.18
SHROOM1-201ENST00000319854 CLSPNQ9HAW4 1339 aa22.39■■□□□ 1.18
SHROOM1-201ENST00000319854 CUL7Q14999 1698 aa22.39■■□□□ 1.17
SHROOM1-201ENST00000319854 ANP32EQ9BTT0 268 aa22.38■■□□□ 1.17
SHROOM1-201ENST00000319854 SETD5Q9C0A6 1442 aa22.38■■□□□ 1.17
SHROOM1-201ENST00000319854 CASKIN1Q8WXD9 1431 aa22.37■■□□□ 1.17
SHROOM1-201ENST00000319854 FMN1Q68DA7 1419 aa22.36■■□□□ 1.17
SHROOM1-201ENST00000319854 FYCO1Q9BQS8 1478 aa22.34■■□□□ 1.17
SHROOM1-201ENST00000319854 FBLN2P98095 1184 aa22.34■■□□□ 1.17
SHROOM1-201ENST00000319854 HIRIP3Q9BW71 556 aaPredicted RBP22.33■■□□□ 1.17
SHROOM1-201ENST00000319854 CHIC2Q9UKJ5 165 aa22.33■■□□□ 1.17
SHROOM1-201ENST00000319854 MAP3K1Q13233 1512 aa22.32■■□□□ 1.16
SHROOM1-201ENST00000319854 CTTNBP2Q8WZ74 1663 aa22.32■■□□□ 1.16
SHROOM1-201ENST00000319854 ABCA5Q8WWZ7 1642 aa22.32■■□□□ 1.16
SHROOM1-201ENST00000319854 EFCAB5A4FU69 1503 aa22.31■■□□□ 1.16
SHROOM1-201ENST00000319854 BCL11AQ9H165 835 aa22.31■■□□□ 1.16
SHROOM1-201ENST00000319854 WDR97A6NE52 1622 aa22.29■■□□□ 1.16
SHROOM1-201ENST00000319854 ZNF608Q9ULD9 1512 aaPredicted RBP22.27■■□□□ 1.16
SHROOM1-201ENST00000319854 CFAP43Q8NDM7 1665 aa22.26■■□□□ 1.15
SHROOM1-201ENST00000319854 RRP7BPQ9NSQ0 103 aa22.25■■□□□ 1.15
SHROOM1-201ENST00000319854 SNAPC4Q5SXM2 1469 aa22.25■■□□□ 1.15
SHROOM1-201ENST00000319854 TARBP1Q13395 1621 aaKnown RBP22.23■■□□□ 1.15
SHROOM1-201ENST00000319854 FGD6Q6ZV73 1430 aa22.23■■□□□ 1.15
SHROOM1-201ENST00000319854 MAPKBP1O60336 1514 aa22.23■■□□□ 1.15
SHROOM1-201ENST00000319854 MRC2Q9UBG0 1479 aa22.21■■□□□ 1.15
SHROOM1-201ENST00000319854 ERCC6Q03468 1493 aa22.18■■□□□ 1.14
SHROOM1-201ENST00000319854 NCOA2Q15596 1464 aa22.17■■□□□ 1.14
SHROOM1-201ENST00000319854 PTPRKQ15262 1439 aa22.17■■□□□ 1.14
SHROOM1-201ENST00000319854 KCNH8Q96L42 1107 aa22.15■■□□□ 1.14
SHROOM1-201ENST00000319854 TRIM52Q96A61 297 aa22.14■■□□□ 1.14
SHROOM1-201ENST00000319854 DDX10Q13206 875 aaKnown RBP22.13■■□□□ 1.13
SHROOM1-201ENST00000319854 GRIN2BQ13224 1484 aa22.13■■□□□ 1.13
SHROOM1-201ENST00000319854 SAMD9Q5K651 1589 aa22.13■■□□□ 1.13
SHROOM1-201ENST00000319854 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
SHROOM1-201ENST00000319854 BCANQ96GW7 911 aa22.12■■□□□ 1.13
SHROOM1-201ENST00000319854 CDK13Q14004 1512 aaKnown RBP22.11■■□□□ 1.13
SHROOM1-201ENST00000319854 LRRIQ1Q96JM4 1722 aa22.1■■□□□ 1.13
SHROOM1-201ENST00000319854 MYOM3Q5VTT5 1437 aa22.09■■□□□ 1.13
SHROOM1-201ENST00000319854 PBRM1Q86U86 1689 aa22.09■■□□□ 1.13
SHROOM1-201ENST00000319854 MAGI3Q5TCQ9 1506 aa22.07■■□□□ 1.12
SHROOM1-201ENST00000319854 IQGAP2Q13576 1575 aa22.07■■□□□ 1.12
SHROOM1-201ENST00000319854 CCDC18Q5T9S5 1454 aa22.06■■□□□ 1.12
SHROOM1-201ENST00000319854 FOXD1Q16676 465 aa22.04■■□□□ 1.12
SHROOM1-201ENST00000319854 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
SHROOM1-201ENST00000319854 TONSLQ96HA7 1378 aa22.03■■□□□ 1.12
SHROOM1-201ENST00000319854 ZNF644Q9H582 1327 aaPredicted RBP22.03■■□□□ 1.12
SHROOM1-201ENST00000319854 IFT140Q96RY7 1462 aa22.02■■□□□ 1.12
SHROOM1-201ENST00000319854 ZNF777Q9ULD5 760 aaPredicted RBP22.01■■□□□ 1.11
SHROOM1-201ENST00000319854 EPRSP07814 1512 aaKnown RBP22■■□□□ 1.11
SHROOM1-201ENST00000319854 PPP1R15AO75807 674 aaPredicted RBP22■■□□□ 1.11
SHROOM1-201ENST00000319854 SUPT6HQ7KZ85 1726 aaKnown RBP21.98■■□□□ 1.11
SHROOM1-201ENST00000319854 NAIPQ13075 1403 aa21.98■■□□□ 1.11
SHROOM1-201ENST00000319854 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.98■■□□□ 1.11
SHROOM1-201ENST00000319854 EHBP1L1Q8N3D4 1523 aa21.97■■□□□ 1.11
SHROOM1-201ENST00000319854 FKBP8Q14318 412 aa21.96■■□□□ 1.11
SHROOM1-201ENST00000319854 HFM1A2PYH4 1435 aa21.96■■□□□ 1.11
SHROOM1-201ENST00000319854 THOC2Q8NI27 1593 aaKnown RBP21.95■■□□□ 1.1
SHROOM1-201ENST00000319854 PTPN23Q9H3S7 1636 aa21.94■■□□□ 1.1
SHROOM1-201ENST00000319854 UGGT2Q9NYU1 1516 aa21.92■■□□□ 1.1
SHROOM1-201ENST00000319854 WDR62O43379 1518 aa21.91■■□□□ 1.1
SHROOM1-201ENST00000319854 HECW1Q76N89 1606 aa21.91■■□□□ 1.1
SHROOM1-201ENST00000319854 UACAQ9BZF9 1416 aa21.91■■□□□ 1.1
SHROOM1-201ENST00000319854 RBM19Q9Y4C8 960 aaKnown RBP21.91■■□□□ 1.1
SHROOM1-201ENST00000319854 GRIN2AQ12879 1464 aa21.9■■□□□ 1.1
SHROOM1-201ENST00000319854 EIF4G3O43432 1585 aaKnown RBP21.9■■□□□ 1.1
SHROOM1-201ENST00000319854 KIAA0586Q9BVV6 1533 aa21.89■■□□□ 1.09
SHROOM1-201ENST00000319854 JPH4Q96JJ6 628 aa21.89■■□□□ 1.09
SHROOM1-201ENST00000319854 CDK11AQ9UQ88 783 aaPredicted RBP21.87■■□□□ 1.09
SHROOM1-201ENST00000319854 DISP1Q96F81 1524 aa21.87■■□□□ 1.09
SHROOM1-201ENST00000319854 PRG4Q92954 1404 aaPredicted RBP21.85■■□□□ 1.09
SHROOM1-201ENST00000319854 PLB1Q6P1J6 1458 aa21.84■■□□□ 1.09
SHROOM1-201ENST00000319854 MPHOSPH9Q99550 1183 aa21.84■■□□□ 1.09
SHROOM1-201ENST00000319854 CFDP1Q9UEE9 299 aaPredicted RBP21.84■■□□□ 1.09
SHROOM1-201ENST00000319854 TIMELESSQ9UNS1 1208 aa21.83■■□□□ 1.08
SHROOM1-201ENST00000319854 NUP153P49790 1475 aaKnown RBP21.82■■□□□ 1.08
SHROOM1-201ENST00000319854 KIAA0556O60303 1618 aa21.8■■□□□ 1.08
SHROOM1-201ENST00000319854 KDM6BO15054 1643 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms