RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 RAD54L2Q9Y4B4 1467 aa35.26■■■■□ 3.24
SPTSSA-201ENST00000298130 LRRC9Q6ZRR7 1453 aa35.25■■■■□ 3.23
SPTSSA-201ENST00000298130 FHOD3Q2V2M9 1422 aa35.22■■■■□ 3.23
SPTSSA-201ENST00000298130 MAPKBP1O60336 1514 aa35.22■■■■□ 3.23
SPTSSA-201ENST00000298130 SETD5Q9C0A6 1442 aa35.19■■■■□ 3.22
SPTSSA-201ENST00000298130 HIRIP3Q9BW71 556 aaPredicted RBP35.19■■■■□ 3.22
SPTSSA-201ENST00000298130 PRDM2Q13029 1718 aa35.18■■■■□ 3.22
SPTSSA-201ENST00000298130 FANCD2Q9BXW9 1451 aa35.18■■■■□ 3.22
SPTSSA-201ENST00000298130 CC2D2AQ9P2K1 1620 aa35.11■■■■□ 3.21
SPTSSA-201ENST00000298130 NESP48681 1621 aa35.1■■■■□ 3.21
SPTSSA-201ENST00000298130 PCF11O94913 1555 aaKnown RBP35.1■■■■□ 3.21
SPTSSA-201ENST00000298130 DDX10Q13206 875 aaKnown RBP35.09■■■■□ 3.21
SPTSSA-201ENST00000298130 FHAD1B1AJZ9 1412 aa35.07■■■■□ 3.2
SPTSSA-201ENST00000298130 SUPT16HQ9Y5B9 1047 aaKnown RBP35.07■■■■□ 3.2
SPTSSA-201ENST00000298130 MAP3K1Q13233 1512 aa35.03■■■■□ 3.2
SPTSSA-201ENST00000298130 WDR97A6NE52 1622 aa35■■■■□ 3.19
SPTSSA-201ENST00000298130 POLA1P09884 1462 aaPredicted RBP34.99■■■■□ 3.19
SPTSSA-201ENST00000298130 TOPBP1Q92547 1522 aa34.93■■■■□ 3.18
SPTSSA-201ENST00000298130 TDRD9Q8NDG6 1382 aaKnown RBP34.88■■■■□ 3.17
SPTSSA-201ENST00000298130 ABCA10Q8WWZ4 1543 aa34.86■■■■□ 3.17
SPTSSA-201ENST00000298130 CFAP43Q8NDM7 1665 aa34.85■■■■□ 3.17
SPTSSA-201ENST00000298130 DNMBPQ6XZF7 1577 aa34.85■■■■□ 3.17
SPTSSA-201ENST00000298130 DNAJC5BQ9UF47 199 aa34.81■■■■□ 3.16
SPTSSA-201ENST00000298130 CASKIN1Q8WXD9 1431 aa34.81■■■■□ 3.16
SPTSSA-201ENST00000298130 BCANQ96GW7 911 aa34.79■■■■□ 3.16
SPTSSA-201ENST00000298130 FYCO1Q9BQS8 1478 aa34.78■■■■□ 3.16
SPTSSA-201ENST00000298130 PPP1R15AO75807 674 aaPredicted RBP34.77■■■■□ 3.16
SPTSSA-201ENST00000298130 MTUS2Q5JR59 1369 aa34.77■■■■□ 3.16
SPTSSA-201ENST00000298130 PTPRKQ15262 1439 aa34.71■■■■□ 3.15
SPTSSA-201ENST00000298130 FGD6Q6ZV73 1430 aa34.71■■■■□ 3.15
SPTSSA-201ENST00000298130 ARID3CA6NKF2 412 aa34.68■■■■□ 3.14
SPTSSA-201ENST00000298130 EFCAB5A4FU69 1503 aa34.67■■■■□ 3.14
SPTSSA-201ENST00000298130 URB2Q14146 1524 aaKnown RBP34.67■■■■□ 3.14
SPTSSA-201ENST00000298130 TRIM52Q96A61 297 aa34.65■■■■□ 3.14
SPTSSA-201ENST00000298130 FMN1Q68DA7 1419 aa34.65■■■■□ 3.14
SPTSSA-201ENST00000298130 CHIC2Q9UKJ5 165 aa34.63■■■■□ 3.13
SPTSSA-201ENST00000298130 TONSLQ96HA7 1378 aa34.62■■■■□ 3.13
SPTSSA-201ENST00000298130 SNAPC4Q5SXM2 1469 aa34.62■■■■□ 3.13
SPTSSA-201ENST00000298130 CCDC18Q5T9S5 1454 aa34.6■■■■□ 3.13
SPTSSA-201ENST00000298130 AQRO60306 1485 aaKnown RBP eCLIP34.59■■■■□ 3.136e-7■■■■■ 56.5
SPTSSA-201ENST00000298130 CTTNBP2Q8WZ74 1663 aa34.59■■■■□ 3.13
SPTSSA-201ENST00000298130 RRP7BPQ9NSQ0 103 aa34.58■■■■□ 3.13
SPTSSA-201ENST00000298130 CUL7Q14999 1698 aa34.58■■■■□ 3.13
SPTSSA-201ENST00000298130 FKBP8Q14318 412 aa34.56■■■■□ 3.12
SPTSSA-201ENST00000298130 TIMELESSQ9UNS1 1208 aa34.55■■■■□ 3.12
SPTSSA-201ENST00000298130 ANP32CO43423 234 aa34.52■■■■□ 3.12
SPTSSA-201ENST00000298130 GAPVD1Q14C86 1478 aa34.52■■■■□ 3.12
SPTSSA-201ENST00000298130 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.52■■■■□ 3.121e-6■■■■■ 32.9
SPTSSA-201ENST00000298130 TSHZ2Q9NRE2 1034 aa34.51■■■■□ 3.12
SPTSSA-201ENST00000298130 NCOA2Q15596 1464 aa34.51■■■■□ 3.12
SPTSSA-201ENST00000298130 HFM1A2PYH4 1435 aa34.45■■■■□ 3.11
SPTSSA-201ENST00000298130 LRRIQ1Q96JM4 1722 aa34.45■■■■□ 3.11
SPTSSA-201ENST00000298130 NAIPQ13075 1403 aa34.44■■■■□ 3.1
SPTSSA-201ENST00000298130 MYOM3Q5VTT5 1437 aa34.43■■■■□ 3.1
SPTSSA-201ENST00000298130 UACAQ9BZF9 1416 aa34.42■■■■□ 3.1
SPTSSA-201ENST00000298130 PTPN23Q9H3S7 1636 aa34.4■■■■□ 3.1
SPTSSA-201ENST00000298130 GRIN2BQ13224 1484 aa34.39■■■■□ 3.1
SPTSSA-201ENST00000298130 SAMD9Q5K651 1589 aa34.35■■■■□ 3.09
SPTSSA-201ENST00000298130 ABCA5Q8WWZ7 1642 aa34.35■■■■□ 3.09
SPTSSA-201ENST00000298130 FOXD1Q16676 465 aa34.35■■■■□ 3.09
SPTSSA-201ENST00000298130 MAGI3Q5TCQ9 1506 aa34.34■■■■□ 3.09
SPTSSA-201ENST00000298130 LAMC3Q9Y6N6 1575 aa34.31■■■■□ 3.08
SPTSSA-201ENST00000298130 CCER2I3L3R5 266 aa34.3■■■■□ 3.08
SPTSSA-201ENST00000298130 PDS5BQ9NTI5 1447 aa34.28■■■■□ 3.08
SPTSSA-201ENST00000298130 SUPT6HQ7KZ85 1726 aaKnown RBP34.24■■■■□ 3.07
SPTSSA-201ENST00000298130 MYT1Q01538 1121 aa34.23■■■■□ 3.07
SPTSSA-201ENST00000298130 NEFLP07196 543 aa34.21■■■■□ 3.07
SPTSSA-201ENST00000298130 EHBP1L1Q8N3D4 1523 aa34.2■■■■□ 3.07
SPTSSA-201ENST00000298130 HSPA5P11021 654 aaKnown RBP34.2■■■■□ 3.07
SPTSSA-201ENST00000298130 UGGT2Q9NYU1 1516 aa34.18■■■■□ 3.06
SPTSSA-201ENST00000298130 CDK13Q14004 1512 aaKnown RBP34.18■■■■□ 3.06
SPTSSA-201ENST00000298130 KIF21AQ7Z4S6 1674 aa34.18■■■■□ 3.06
SPTSSA-201ENST00000298130 KDM5BQ9UGL1 1544 aa34.15■■■■□ 3.06
SPTSSA-201ENST00000298130 WASHC2AQ641Q2 1341 aa34.14■■■■□ 3.06
SPTSSA-201ENST00000298130 KDM6BO15054 1643 aa34.14■■■■□ 3.06
SPTSSA-201ENST00000298130 HNRNPUQ00839 825 aaKnown RBP eCLIP34.13■■■■□ 3.05
SPTSSA-201ENST00000298130 MPHOSPH9Q99550 1183 aa34.12■■■■□ 3.05
SPTSSA-201ENST00000298130 DENND4BO75064 1496 aaPredicted RBP34.12■■■■□ 3.05
SPTSSA-201ENST00000298130 IRX6P78412 446 aaPredicted RBP34.11■■■■□ 3.05
SPTSSA-201ENST00000298130 L3MBTL2Q969R5 705 aa34.09■■■■□ 3.05
SPTSSA-201ENST00000298130 ZNF644Q9H582 1327 aaPredicted RBP34.08■■■■□ 3.05
SPTSSA-201ENST00000298130 EPRSP07814 1512 aaKnown RBP34.08■■■■□ 3.05
SPTSSA-201ENST00000298130 TARBP1Q13395 1621 aaKnown RBP34.07■■■■□ 3.04
SPTSSA-201ENST00000298130 ARHGEF11O15085 1522 aa34.05■■■■□ 3.04
SPTSSA-201ENST00000298130 THOC2Q8NI27 1593 aaKnown RBP34.04■■■■□ 3.04
SPTSSA-201ENST00000298130 CCDC184Q52MB2 194 aa34.04■■■■□ 3.04
SPTSSA-201ENST00000298130 C11orf95C9JLR9 678 aaPredicted RBP34.03■■■■□ 3.04
SPTSSA-201ENST00000298130 EIF4G2P78344 907 aaKnown RBP eCLIP34■■■■□ 3.03
SPTSSA-201ENST00000298130 IQGAP2Q13576 1575 aa33.97■■■■□ 3.03
SPTSSA-201ENST00000298130 CNGB1Q14028 1251 aaPredicted RBP33.97■■■■□ 3.03
SPTSSA-201ENST00000298130 TCOF1Q13428 1488 aaKnown RBP33.97■■■■□ 3.03
SPTSSA-201ENST00000298130 HECW1Q76N89 1606 aa33.96■■■■□ 3.03
SPTSSA-201ENST00000298130 NBPF8Q3BBV2 869 aa33.92■■■■□ 3.02
SPTSSA-201ENST00000298130 ZNF608Q9ULD9 1512 aaPredicted RBP33.9■■■■□ 3.02
SPTSSA-201ENST00000298130 PBRM1Q86U86 1689 aa33.9■■■■□ 3.02
SPTSSA-201ENST00000298130 SLC4A1APQ9BWU0 796 aaKnown RBP33.87■■■■□ 3.01
SPTSSA-201ENST00000298130 FAM9BQ8IZU0 186 aa33.87■■■■□ 3.01
SPTSSA-201ENST00000298130 RBM19Q9Y4C8 960 aaKnown RBP33.86■■■■□ 3.01
SPTSSA-201ENST00000298130 WDR62O43379 1518 aa33.85■■■■□ 3.01
SPTSSA-201ENST00000298130 GCC2Q8IWJ2 1684 aa33.84■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms