RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 SCAF1Q9H7N4 1312 aaKnown RBP27.15■■□□□ 1.94
SHKBP1-201ENST00000291842 FHAD1B1AJZ9 1412 aa27.12■■□□□ 1.93
SHKBP1-201ENST00000291842 PDS5BQ9NTI5 1447 aa27.11■■□□□ 1.93
SHKBP1-201ENST00000291842 LRRC9Q6ZRR7 1453 aa27.11■■□□□ 1.93
SHKBP1-201ENST00000291842 PCF11O94913 1555 aaKnown RBP27.11■■□□□ 1.93
SHKBP1-201ENST00000291842 MAP3K1Q13233 1512 aa27.11■■□□□ 1.93
SHKBP1-201ENST00000291842 CUL7Q14999 1698 aa27.11■■□□□ 1.93
SHKBP1-201ENST00000291842 WDR97A6NE52 1622 aa27.07■■□□□ 1.92
SHKBP1-201ENST00000291842 PHLDB1Q86UU1 1377 aa27.06■■□□□ 1.92
SHKBP1-201ENST00000291842 CLSPNQ9HAW4 1339 aa27.05■■□□□ 1.92
SHKBP1-201ENST00000291842 KIF21AQ7Z4S6 1674 aa27.05■■□□□ 1.92
SHKBP1-201ENST00000291842 NEUROD1Q13562 356 aa27.02■■□□□ 1.92
SHKBP1-201ENST00000291842 CTTNBP2Q8WZ74 1663 aa27.02■■□□□ 1.92
SHKBP1-201ENST00000291842 GAPVD1Q14C86 1478 aa27.02■■□□□ 1.92
SHKBP1-201ENST00000291842 FAM50AQ14320 339 aaKnown RBP27.01■■□□□ 1.91
SHKBP1-201ENST00000291842 ABCA5Q8WWZ7 1642 aa27■■□□□ 1.91
SHKBP1-201ENST00000291842 EFCAB5A4FU69 1503 aa26.99■■□□□ 1.91
SHKBP1-201ENST00000291842 ACIN1Q9UKV3 1341 aaKnown RBP26.99■■□□□ 1.91
SHKBP1-201ENST00000291842 CFAP43Q8NDM7 1665 aa26.98■■□□□ 1.91
SHKBP1-201ENST00000291842 RAB3GAP2Q9H2M9 1393 aa26.96■■□□□ 1.91
SHKBP1-201ENST00000291842 FYCO1Q9BQS8 1478 aa26.94■■□□□ 1.9
SHKBP1-201ENST00000291842 CASKIN1Q8WXD9 1431 aa26.94■■□□□ 1.9
SHKBP1-201ENST00000291842 MIER1Q8N108 512 aa26.93■■□□□ 1.9
SHKBP1-201ENST00000291842 CENPBP07199 599 aaPredicted RBP26.87■■□□□ 1.89
SHKBP1-201ENST00000291842 FMN1Q68DA7 1419 aa26.87■■□□□ 1.89
SHKBP1-201ENST00000291842 AQRO60306 1485 aaKnown RBP eCLIP26.86■■□□□ 1.891e-9■■■■□ 22.4
SHKBP1-201ENST00000291842 TARBP1Q13395 1621 aaKnown RBP26.86■■□□□ 1.89
SHKBP1-201ENST00000291842 YTHDC1Q96MU7 727 aaKnown RBP26.85■■□□□ 1.89
SHKBP1-201ENST00000291842 SETD5Q9C0A6 1442 aa26.85■■□□□ 1.89
SHKBP1-201ENST00000291842 SNAPC4Q5SXM2 1469 aa26.83■■□□□ 1.89
SHKBP1-201ENST00000291842 SAMD9Q5K651 1589 aa26.79■■□□□ 1.88
SHKBP1-201ENST00000291842 MAPKBP1O60336 1514 aa26.77■■□□□ 1.88
SHKBP1-201ENST00000291842 MTUS2Q5JR59 1369 aa26.76■■□□□ 1.87
SHKBP1-201ENST00000291842 LRRIQ1Q96JM4 1722 aa26.72■■□□□ 1.87
SHKBP1-201ENST00000291842 MRC2Q9UBG0 1479 aa26.71■■□□□ 1.87
SHKBP1-201ENST00000291842 GTF3C3Q9Y5Q9 886 aa26.7■■□□□ 1.87
SHKBP1-201ENST00000291842 PBRM1Q86U86 1689 aa26.7■■□□□ 1.86
SHKBP1-201ENST00000291842 FGD6Q6ZV73 1430 aa26.68■■□□□ 1.86
SHKBP1-201ENST00000291842 GRIN2BQ13224 1484 aa26.68■■□□□ 1.86
SHKBP1-201ENST00000291842 SIN3AQ96ST3 1273 aa26.68■■□□□ 1.86
SHKBP1-201ENST00000291842 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.63■■□□□ 1.85
SHKBP1-201ENST00000291842 ZNF608Q9ULD9 1512 aaPredicted RBP26.61■■□□□ 1.85
SHKBP1-201ENST00000291842 NCOA2Q15596 1464 aa26.6■■□□□ 1.85
SHKBP1-201ENST00000291842 ADAMTS12P58397 1594 aa26.6■■□□□ 1.85
SHKBP1-201ENST00000291842 ARID3CA6NKF2 412 aa26.57■■□□□ 1.84
SHKBP1-201ENST00000291842 IQGAP2Q13576 1575 aa26.57■■□□□ 1.84
SHKBP1-201ENST00000291842 PTPRKQ15262 1439 aa26.56■■□□□ 1.84
SHKBP1-201ENST00000291842 MYOM3Q5VTT5 1437 aa26.54■■□□□ 1.84
SHKBP1-201ENST00000291842 MAGI3Q5TCQ9 1506 aa26.54■■□□□ 1.84
SHKBP1-201ENST00000291842 THOC2Q8NI27 1593 aaKnown RBP26.53■■□□□ 1.84
SHKBP1-201ENST00000291842 SUPT6HQ7KZ85 1726 aaKnown RBP26.52■■□□□ 1.84
SHKBP1-201ENST00000291842 EHBP1L1Q8N3D4 1523 aa26.51■■□□□ 1.83
SHKBP1-201ENST00000291842 IFT140Q96RY7 1462 aa26.5■■□□□ 1.83
SHKBP1-201ENST00000291842 WDR62O43379 1518 aa26.47■■□□□ 1.83
SHKBP1-201ENST00000291842 CCDC18Q5T9S5 1454 aa26.46■■□□□ 1.83
SHKBP1-201ENST00000291842 CDK13Q14004 1512 aaKnown RBP26.44■■□□□ 1.82
SHKBP1-201ENST00000291842 UGGT2Q9NYU1 1516 aa26.44■■□□□ 1.82
SHKBP1-201ENST00000291842 HECW1Q76N89 1606 aa26.44■■□□□ 1.82
SHKBP1-201ENST00000291842 HFM1A2PYH4 1435 aa26.43■■□□□ 1.82
SHKBP1-201ENST00000291842 EPRSP07814 1512 aaKnown RBP26.43■■□□□ 1.82
SHKBP1-201ENST00000291842 PTPN23Q9H3S7 1636 aa26.42■■□□□ 1.82
SHKBP1-201ENST00000291842 CHIC2Q9UKJ5 165 aa26.41■■□□□ 1.82
SHKBP1-201ENST00000291842 ERCC6Q03468 1493 aa26.4■■□□□ 1.82
SHKBP1-201ENST00000291842 ARHGEF11O15085 1522 aa26.4■■□□□ 1.82
SHKBP1-201ENST00000291842 NAIPQ13075 1403 aa26.39■■□□□ 1.82
SHKBP1-201ENST00000291842 RRP7BPQ9NSQ0 103 aa26.38■■□□□ 1.81
SHKBP1-201ENST00000291842 EIF4G3O43432 1585 aaKnown RBP26.36■■□□□ 1.81
SHKBP1-201ENST00000291842 HIRIP3Q9BW71 556 aaPredicted RBP26.34■■□□□ 1.81
SHKBP1-201ENST00000291842 UACAQ9BZF9 1416 aa26.34■■□□□ 1.81
SHKBP1-201ENST00000291842 PPP1R15AO75807 674 aaPredicted RBP26.34■■□□□ 1.81
SHKBP1-201ENST00000291842 KIAA0586Q9BVV6 1533 aa26.33■■□□□ 1.81
SHKBP1-201ENST00000291842 TIMELESSQ9UNS1 1208 aa26.33■■□□□ 1.81
SHKBP1-201ENST00000291842 GRIN2AQ12879 1464 aa26.32■■□□□ 1.8
SHKBP1-201ENST00000291842 DISP1Q96F81 1524 aa26.31■■□□□ 1.8
SHKBP1-201ENST00000291842 FBLN2P98095 1184 aa26.29■■□□□ 1.8
SHKBP1-201ENST00000291842 KIAA0556O60303 1618 aa26.28■■□□□ 1.8
SHKBP1-201ENST00000291842 TONSLQ96HA7 1378 aa26.27■■□□□ 1.8
SHKBP1-201ENST00000291842 TCOF1Q13428 1488 aaKnown RBP26.27■■□□□ 1.8
SHKBP1-201ENST00000291842 DDX10Q13206 875 aaKnown RBP26.27■■□□□ 1.8
SHKBP1-201ENST00000291842 CHMP7Q8WUX9 453 aaPredicted RBP26.27■■□□□ 1.8
SHKBP1-201ENST00000291842 TRIM52Q96A61 297 aa26.22■■□□□ 1.79
SHKBP1-201ENST00000291842 KCNH8Q96L42 1107 aa26.21■■□□□ 1.79
SHKBP1-201ENST00000291842 NUP153P49790 1475 aaKnown RBP26.21■■□□□ 1.79
SHKBP1-201ENST00000291842 MIA2Q96PC5 1412 aa26.19■■□□□ 1.78
SHKBP1-201ENST00000291842 KDM6BO15054 1643 aa26.17■■□□□ 1.78
SHKBP1-201ENST00000291842 ZNF644Q9H582 1327 aaPredicted RBP26.17■■□□□ 1.78
SHKBP1-201ENST00000291842 MAGI1Q96QZ7 1491 aaPredicted RBP26.16■■□□□ 1.78
SHKBP1-201ENST00000291842 RAPGEF6Q8TEU7 1601 aa26.16■■□□□ 1.78
SHKBP1-201ENST00000291842 CEP170Q5SW79 1584 aa26.15■■□□□ 1.78
SHKBP1-201ENST00000291842 SYNJ2O15056 1496 aa26.14■■□□□ 1.77
SHKBP1-201ENST00000291842 GCC2Q8IWJ2 1684 aa26.13■■□□□ 1.77
SHKBP1-201ENST00000291842 CDK11AQ9UQ88 783 aaPredicted RBP26.11■■□□□ 1.77
SHKBP1-201ENST00000291842 PLB1Q6P1J6 1458 aa26.1■■□□□ 1.77
SHKBP1-201ENST00000291842 DENND4BO75064 1496 aaPredicted RBP26.1■■□□□ 1.77
SHKBP1-201ENST00000291842 PRG4Q92954 1404 aaPredicted RBP26.09■■□□□ 1.77
SHKBP1-201ENST00000291842 FOXD1Q16676 465 aa26.08■■□□□ 1.77
SHKBP1-201ENST00000291842 JPH4Q96JJ6 628 aa26.07■■□□□ 1.76
SHKBP1-201ENST00000291842 AKNAQ7Z591 1439 aa26.07■■□□□ 1.76
SHKBP1-201ENST00000291842 MPHOSPH9Q99550 1183 aa26.07■■□□□ 1.76
SHKBP1-201ENST00000291842 DAPK1P53355 1430 aa26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms