RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 NISCHQ9Y2I1 1504 aa38.84■■■■□ 3.81
SHKBP1-201ENST00000291842 CCDC180Q9P1Z9 1646 aa33.11■■■□□ 2.89
SHKBP1-201ENST00000291842 SHROOM4Q9ULL8 1493 aa33.01■■■□□ 2.88
SHKBP1-201ENST00000291842 ZCCHC6Q5VYS8 1495 aaKnown RBP32.78■■■□□ 2.84
SHKBP1-201ENST00000291842 DCAF8L2P0C7V8 631 aa32.43■■■□□ 2.78
SHKBP1-201ENST00000291842 SUPT5HO00267 1087 aaKnown RBP32.24■■■□□ 2.75
SHKBP1-201ENST00000291842 DCAF1Q9Y4B6 1507 aa31.81■■■□□ 2.68
SHKBP1-201ENST00000291842 CHIC1Q5VXU3 224 aa31.15■■■□□ 2.58
SHKBP1-201ENST00000291842 SCRIBQ14160 1630 aa31.08■■■□□ 2.57
SHKBP1-201ENST00000291842 ABCC9O60706 1549 aa31.03■■■□□ 2.56
SHKBP1-201ENST00000291842 MYO15BQ96JP2 1530 aa30.98■■■□□ 2.55
SHKBP1-201ENST00000291842 NACADO15069 1562 aa30.7■■■□□ 2.5
SHKBP1-201ENST00000291842 RSF1Q96T23 1441 aaPredicted RBP30.65■■■□□ 2.5
SHKBP1-201ENST00000291842 CECR2Q9BXF3 1484 aa30.36■■■□□ 2.45
SHKBP1-201ENST00000291842 RB1CC1Q8TDY2 1594 aa30.29■■■□□ 2.44
SHKBP1-201ENST00000291842 LOC105371045A0A1W2PR82 267 aa30.27■■■□□ 2.44
SHKBP1-201ENST00000291842 MROH2BQ7Z745 1585 aa30.21■■■□□ 2.43
SHKBP1-201ENST00000291842 WIZO95785 1651 aa30.04■■■□□ 2.4
SHKBP1-201ENST00000291842 TRIM41Q8WV44 630 aa30.01■■■□□ 2.4
SHKBP1-201ENST00000291842 PCGF6Q9BYE7 350 aa29.92■■■□□ 2.38
SHKBP1-201ENST00000291842 UNC13AQ9UPW8 1703 aa29.84■■■□□ 2.37
SHKBP1-201ENST00000291842 BAZ1AQ9NRL2 1556 aaPredicted RBP29.84■■■□□ 2.37
SHKBP1-201ENST00000291842 FAM9AQ8IZU1 332 aaPredicted RBP29.82■■■□□ 2.36
SHKBP1-201ENST00000291842 HRCP23327 699 aa29.66■■■□□ 2.34
SHKBP1-201ENST00000291842 PABPN1Q86U42 306 aaKnown RBP eCLIP29.66■■■□□ 2.34
SHKBP1-201ENST00000291842 SMARCA4P51532 1647 aa29.64■■■□□ 2.33
SHKBP1-201ENST00000291842 EHMT2Q96KQ7 1210 aa29.62■■■□□ 2.33
SHKBP1-201ENST00000291842 TOP2AP11388 1531 aaKnown RBP29.52■■■□□ 2.32
SHKBP1-201ENST00000291842 BICRAQ9NZM4 1560 aa29.48■■■□□ 2.31
SHKBP1-201ENST00000291842 EIF4G1Q04637 1599 aaKnown RBP29.44■■■□□ 2.3
SHKBP1-201ENST00000291842 CCDC88BA6NC98 1476 aa29.43■■■□□ 2.3
SHKBP1-201ENST00000291842 TRIM26Q12899 539 aaPredicted RBP29.37■■■□□ 2.29
SHKBP1-201ENST00000291842 SMARCA2P51531 1590 aa29.37■■■□□ 2.29
SHKBP1-201ENST00000291842 ABCC8Q09428 1581 aa29.28■■■□□ 2.28
SHKBP1-201ENST00000291842 PPARGC1BQ86YN6 1023 aaKnown RBP29.18■■■□□ 2.26
SHKBP1-201ENST00000291842 PEG3Q9GZU2 1588 aa29.04■■■□□ 2.24
SHKBP1-201ENST00000291842 ATAD2BQ9ULI0 1458 aa28.96■■■□□ 2.23
SHKBP1-201ENST00000291842 SOGA1O94964 1423 aa28.95■■■□□ 2.23
SHKBP1-201ENST00000291842 BAZ1BQ9UIG0 1483 aaKnown RBP28.88■■■□□ 2.21
SHKBP1-201ENST00000291842 RUSC2Q8N2Y8 1516 aa28.83■■■□□ 2.21
SHKBP1-201ENST00000291842 WRNQ14191 1432 aaPredicted RBP eCLIP28.8■■■□□ 2.2
SHKBP1-201ENST00000291842 CSRNP3Q8WYN3 585 aa28.75■■■□□ 2.19
SHKBP1-201ENST00000291842 SYNJ1O43426 1573 aa28.67■■■□□ 2.18
SHKBP1-201ENST00000291842 EEA1Q15075 1411 aa28.66■■■□□ 2.18
SHKBP1-201ENST00000291842 CEP162Q5TB80 1403 aa28.66■■■□□ 2.18
SHKBP1-201ENST00000291842 UBTFP17480 764 aaKnown RBP28.65■■■□□ 2.18
SHKBP1-201ENST00000291842 TNIKQ9UKE5 1360 aa28.61■■■□□ 2.17
SHKBP1-201ENST00000291842 TTBK1Q5TCY1 1321 aaPredicted RBP28.58■■■□□ 2.17
SHKBP1-201ENST00000291842 ZEB1P37275 1124 aaPredicted RBP28.53■■■□□ 2.16
SHKBP1-201ENST00000291842 GOLGA3Q08378 1498 aa28.5■■■□□ 2.15
SHKBP1-201ENST00000291842 NCAPD3P42695 1498 aa28.42■■■□□ 2.14
SHKBP1-201ENST00000291842 HMGXB3Q12766 1538 aa28.38■■■□□ 2.13
SHKBP1-201ENST00000291842 CEP164Q9UPV0 1460 aa28.36■■■□□ 2.13
SHKBP1-201ENST00000291842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.33■■■□□ 2.13
SHKBP1-201ENST00000291842 TOP2BQ02880 1626 aa28.31■■■□□ 2.12
SHKBP1-201ENST00000291842 KIF21BO75037 1637 aa28.3■■■□□ 2.12
SHKBP1-201ENST00000291842 RAPGEF2Q9Y4G8 1499 aa28.25■■■□□ 2.11
SHKBP1-201ENST00000291842 RANGAP1P46060 587 aaPredicted RBP28.24■■■□□ 2.11
SHKBP1-201ENST00000291842 CCER1Q8TC90 406 aaPredicted RBP28.21■■■□□ 2.11
SHKBP1-201ENST00000291842 BIVM-ERCC5R4GMW8 1640 aa28.2■■■□□ 2.1
SHKBP1-201ENST00000291842 CLIP1P30622 1438 aa28.19■■■□□ 2.1
SHKBP1-201ENST00000291842 CUX1P39880 1505 aa28.14■■■□□ 2.09
SHKBP1-201ENST00000291842 CFTRP13569 1480 aa28.13■■■□□ 2.09
SHKBP1-201ENST00000291842 VPS8Q8N3P4 1428 aa28■■■□□ 2.07
SHKBP1-201ENST00000291842 PRXQ9BXM0 1461 aa27.96■■■□□ 2.07
SHKBP1-201ENST00000291842 KIF27Q86VH2 1401 aa27.93■■■□□ 2.06
SHKBP1-201ENST00000291842 APLP2Q06481 763 aa27.92■■■□□ 2.06
SHKBP1-201ENST00000291842 CC2D2AQ9P2K1 1620 aa27.9■■■□□ 2.06
SHKBP1-201ENST00000291842 ERICH3Q5RHP9 1530 aa27.9■■■□□ 2.06
SHKBP1-201ENST00000291842 CADPSQ9ULU8 1353 aa27.89■■■□□ 2.06
SHKBP1-201ENST00000291842 HNRNPUL2Q1KMD3 747 aaKnown RBP27.86■■■□□ 2.05
SHKBP1-201ENST00000291842 PRDM2Q13029 1718 aa27.84■■■□□ 2.05
SHKBP1-201ENST00000291842 ARAP1Q96P48 1450 aa27.76■■■□□ 2.03
SHKBP1-201ENST00000291842 CUX2O14529 1486 aa27.75■■■□□ 2.03
SHKBP1-201ENST00000291842 FGD5Q6ZNL6 1462 aa27.69■■■□□ 2.02
SHKBP1-201ENST00000291842 IGF1RP08069 1367 aa27.67■■■□□ 2.02
SHKBP1-201ENST00000291842 KANK4Q5T7N3 995 aaPredicted RBP27.63■■■□□ 2.01
SHKBP1-201ENST00000291842 FANCD2Q9BXW9 1451 aa27.63■■■□□ 2.01
SHKBP1-201ENST00000291842 ARHGAP35Q9NRY4 1499 aa27.58■■■□□ 2.01
SHKBP1-201ENST00000291842 NESP48681 1621 aa27.57■■■□□ 2
SHKBP1-201ENST00000291842 CARMIL1Q5VZK9 1371 aa27.55■■■□□ 2
SHKBP1-201ENST00000291842 RAD54L2Q9Y4B4 1467 aa27.48■■□□□ 1.99
SHKBP1-201ENST00000291842 DIEXFQ68CQ4 756 aaKnown RBP27.46■■□□□ 1.99
SHKBP1-201ENST00000291842 DNMBPQ6XZF7 1577 aa27.42■■□□□ 1.98
SHKBP1-201ENST00000291842 TOPBP1Q92547 1522 aa27.41■■□□□ 1.98
SHKBP1-201ENST00000291842 POLA1P09884 1462 aaPredicted RBP27.39■■□□□ 1.98
SHKBP1-201ENST00000291842 DNAJC5BQ9UF47 199 aa27.38■■□□□ 1.97
SHKBP1-201ENST00000291842 P3H3Q8IVL6 736 aa27.35■■□□□ 1.97
SHKBP1-201ENST00000291842 ZNF316A6NFI3 1004 aaPredicted RBP27.33■■□□□ 1.96
SHKBP1-201ENST00000291842 ABCA10Q8WWZ4 1543 aa27.32■■□□□ 1.96
SHKBP1-201ENST00000291842 RRBP1Q9P2E9 1410 aaKnown RBP27.29■■□□□ 1.96
SHKBP1-201ENST00000291842 ITGAEP38570 1179 aa27.27■■□□□ 1.96
SHKBP1-201ENST00000291842 URB2Q14146 1524 aaKnown RBP27.25■■□□□ 1.95
SHKBP1-201ENST00000291842 LAMC3Q9Y6N6 1575 aa27.24■■□□□ 1.95
SHKBP1-201ENST00000291842 CCNB3Q8WWL7 1395 aa27.23■■□□□ 1.95
SHKBP1-201ENST00000291842 ATP1B4Q9UN42 357 aaPredicted RBP27.22■■□□□ 1.95
SHKBP1-201ENST00000291842 TIAM1Q13009 1591 aa27.2■■□□□ 1.94
SHKBP1-201ENST00000291842 DHX57Q6P158 1386 aaKnown RBP27.2■■□□□ 1.94
SHKBP1-201ENST00000291842 TDRD9Q8NDG6 1382 aaKnown RBP27.17■■□□□ 1.94
SHKBP1-201ENST00000291842 FHOD3Q2V2M9 1422 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms