RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 RAD54L2Q9Y4B4 1467 aa18.96■□□□□ 0.63
NUP54-201ENST00000264883 RAPGEF2Q9Y4G8 1499 aa18.96■□□□□ 0.63
NUP54-201ENST00000264883 ERICH3Q5RHP9 1530 aa18.95■□□□□ 0.62
NUP54-201ENST00000264883 HNRNPUL2Q1KMD3 747 aaKnown RBP18.95■□□□□ 0.62
NUP54-201ENST00000264883 WDR97A6NE52 1622 aa18.93■□□□□ 0.62
NUP54-201ENST00000264883 IGF1RP08069 1367 aa18.91■□□□□ 0.62
NUP54-201ENST00000264883 THOC2Q8NI27 1593 aaKnown RBP18.9■□□□□ 0.62
NUP54-201ENST00000264883 WDR62O43379 1518 aa18.89■□□□□ 0.61
NUP54-201ENST00000264883 TARBP1Q13395 1621 aaKnown RBP18.86■□□□□ 0.61
NUP54-201ENST00000264883 RBM19Q9Y4C8 960 aaKnown RBP18.84■□□□□ 0.61
NUP54-201ENST00000264883 BCANQ96GW7 911 aa18.84■□□□□ 0.61
NUP54-201ENST00000264883 ABCA5Q8WWZ7 1642 aa18.83■□□□□ 0.6
NUP54-201ENST00000264883 DHX57Q6P158 1386 aaKnown RBP18.8■□□□□ 0.6
NUP54-201ENST00000264883 CARMIL1Q5VZK9 1371 aa18.79■□□□□ 0.6
NUP54-201ENST00000264883 ARAP1Q96P48 1450 aa18.77■□□□□ 0.6
NUP54-201ENST00000264883 RRBP1Q9P2E9 1410 aaKnown RBP18.77■□□□□ 0.59
NUP54-201ENST00000264883 FKBP8Q14318 412 aa18.76■□□□□ 0.59
NUP54-201ENST00000264883 TDRD9Q8NDG6 1382 aaKnown RBP18.76■□□□□ 0.59
NUP54-201ENST00000264883 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
NUP54-201ENST00000264883 CUL7Q14999 1698 aa18.75■□□□□ 0.59
NUP54-201ENST00000264883 IFT140Q96RY7 1462 aa18.72■□□□□ 0.59
NUP54-201ENST00000264883 ERICH6Q7L0X2 663 aa18.69■□□□□ 0.58
NUP54-201ENST00000264883 MSH5O43196 834 aa18.69■□□□□ 0.58
NUP54-201ENST00000264883 PBRM1Q86U86 1689 aa18.65■□□□□ 0.58
NUP54-201ENST00000264883 AQRO60306 1485 aaKnown RBP eCLIP18.64■□□□□ 0.57
NUP54-201ENST00000264883 ZNF608Q9ULD9 1512 aaPredicted RBP18.63■□□□□ 0.57
NUP54-201ENST00000264883 KCNH8Q96L42 1107 aa18.63■□□□□ 0.57
NUP54-201ENST00000264883 NEFLP07196 543 aa18.62■□□□□ 0.57
NUP54-201ENST00000264883 MAP3K1Q13233 1512 aa18.61■□□□□ 0.57
NUP54-201ENST00000264883 CCNB3Q8WWL7 1395 aa18.61■□□□□ 0.57
NUP54-201ENST00000264883 GRIN2BQ13224 1484 aa18.59■□□□□ 0.57
NUP54-201ENST00000264883 EIF4G3O43432 1585 aaKnown RBP18.57■□□□□ 0.56
NUP54-201ENST00000264883 ARHGAP35Q9NRY4 1499 aa18.57■□□□□ 0.56
NUP54-201ENST00000264883 ADAMTS12P58397 1594 aa18.57■□□□□ 0.56
NUP54-201ENST00000264883 KANK4Q5T7N3 995 aaPredicted RBP18.56■□□□□ 0.56
NUP54-201ENST00000264883 FANCIQ9NVI1 1328 aa18.56■□□□□ 0.56
NUP54-201ENST00000264883 ITGAEP38570 1179 aa18.56■□□□□ 0.56
NUP54-201ENST00000264883 MYT1LQ9UL68 1186 aa18.56■□□□□ 0.56
NUP54-201ENST00000264883 FHAD1B1AJZ9 1412 aa18.55■□□□□ 0.56
NUP54-201ENST00000264883 CTTNBP2Q8WZ74 1663 aa18.55■□□□□ 0.56
NUP54-201ENST00000264883 RANGAP1P46060 587 aaPredicted RBP18.54■□□□□ 0.56
NUP54-201ENST00000264883 TIAM1Q13009 1591 aa18.48■□□□□ 0.55
NUP54-201ENST00000264883 DEKP35659 375 aaKnown RBP18.47■□□□□ 0.55
NUP54-201ENST00000264883 SNAPC4Q5SXM2 1469 aa18.46■□□□□ 0.55
NUP54-201ENST00000264883 MAPKBP1O60336 1514 aa18.45■□□□□ 0.54
NUP54-201ENST00000264883 EFCAB5A4FU69 1503 aa18.44■□□□□ 0.54
NUP54-201ENST00000264883 MAGI1Q96QZ7 1491 aaPredicted RBP18.44■□□□□ 0.54
NUP54-201ENST00000264883 TIMELESSQ9UNS1 1208 aa18.43■□□□□ 0.54
NUP54-201ENST00000264883 RAB3GAP2Q9H2M9 1393 aa18.43■□□□□ 0.54
NUP54-201ENST00000264883 SETD5Q9C0A6 1442 aa18.42■□□□□ 0.54
NUP54-201ENST00000264883 SAMD9Q5K651 1589 aa18.39■□□□□ 0.53
NUP54-201ENST00000264883 CDK11AQ9UQ88 783 aaPredicted RBP18.39■□□□□ 0.53
NUP54-201ENST00000264883 ANO8Q9HCE9 1232 aaPredicted RBP18.38■□□□□ 0.53
NUP54-201ENST00000264883 GRIN2AQ12879 1464 aa18.38■□□□□ 0.53
NUP54-201ENST00000264883 CFAP43Q8NDM7 1665 aa18.38■□□□□ 0.53
NUP54-201ENST00000264883 LRRC9Q6ZRR7 1453 aa18.38■□□□□ 0.53
NUP54-201ENST00000264883 SYNJ2O15056 1496 aa18.37■□□□□ 0.53
NUP54-201ENST00000264883 IQGAP2Q13576 1575 aa18.35■□□□□ 0.53
NUP54-201ENST00000264883 TRIM52Q96A61 297 aa18.34■□□□□ 0.53
NUP54-201ENST00000264883 FHOD3Q2V2M9 1422 aa18.33■□□□□ 0.53
NUP54-201ENST00000264883 DDX10Q13206 875 aaKnown RBP18.32■□□□□ 0.52
NUP54-201ENST00000264883 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.32■□□□□ 0.52
NUP54-201ENST00000264883 KIAA0586Q9BVV6 1533 aa18.31■□□□□ 0.52
NUP54-201ENST00000264883 UGGT2Q9NYU1 1516 aa18.29■□□□□ 0.52
NUP54-201ENST00000264883 P3H3Q8IVL6 736 aa18.28■□□□□ 0.52
NUP54-201ENST00000264883 PCF11O94913 1555 aaKnown RBP18.28■□□□□ 0.52
NUP54-201ENST00000264883 CEP170Q5SW79 1584 aa18.27■□□□□ 0.52
NUP54-201ENST00000264883 CCER2I3L3R5 266 aa18.27■□□□□ 0.52
NUP54-201ENST00000264883 NUP160Q12769 1436 aa18.27■□□□□ 0.51
NUP54-201ENST00000264883 CHMP7Q8WUX9 453 aaPredicted RBP18.26■□□□□ 0.51
NUP54-201ENST00000264883 FMN1Q68DA7 1419 aa18.26■□□□□ 0.51
NUP54-201ENST00000264883 ERICH6BQ5W0A0 696 aa18.25■□□□□ 0.51
NUP54-201ENST00000264883 PHLDB1Q86UU1 1377 aa18.25■□□□□ 0.51
NUP54-201ENST00000264883 CASKIN1Q8WXD9 1431 aa18.25■□□□□ 0.51
NUP54-201ENST00000264883 FYCO1Q9BQS8 1478 aa18.25■□□□□ 0.51
NUP54-201ENST00000264883 PPP1R15AO75807 674 aaPredicted RBP18.22■□□□□ 0.51
NUP54-201ENST00000264883 SALL2Q9Y467 1007 aaPredicted RBP18.2■□□□□ 0.5
NUP54-201ENST00000264883 DISP1Q96F81 1524 aa18.2■□□□□ 0.5
NUP54-201ENST00000264883 ANP32CO43423 234 aa18.19■□□□□ 0.5
NUP54-201ENST00000264883 FBLN2P98095 1184 aa18.18■□□□□ 0.5
NUP54-201ENST00000264883 KIAA0556O60303 1618 aa18.18■□□□□ 0.5
NUP54-201ENST00000264883 CHD1O14646 1710 aa18.17■□□□□ 0.5
NUP54-201ENST00000264883 IRX6P78412 446 aaPredicted RBP18.16■□□□□ 0.5
NUP54-201ENST00000264883 NBR1Q14596 966 aa18.16■□□□□ 0.5
NUP54-201ENST00000264883 NOP58Q9Y2X3 529 aaKnown RBP18.15■□□□□ 0.5
NUP54-201ENST00000264883 FAM50AQ14320 339 aaKnown RBP18.14■□□□□ 0.49
NUP54-201ENST00000264883 LRRIQ1Q96JM4 1722 aa18.13■□□□□ 0.49
NUP54-201ENST00000264883 SIN3AQ96ST3 1273 aa18.1■□□□□ 0.49
NUP54-201ENST00000264883 PPP4R2Q9NY27 417 aa18.09■□□□□ 0.49
NUP54-201ENST00000264883 JPH4Q96JJ6 628 aa18.08■□□□□ 0.48
NUP54-201ENST00000264883 FGD6Q6ZV73 1430 aa18.07■□□□□ 0.48
NUP54-201ENST00000264883 UACAQ9BZF9 1416 aa18.07■□□□□ 0.48
NUP54-201ENST00000264883 HECW1Q76N89 1606 aa18.07■□□□□ 0.48
NUP54-201ENST00000264883 HFM1A2PYH4 1435 aa18.06■□□□□ 0.48
NUP54-201ENST00000264883 TONSLQ96HA7 1378 aa18.06■□□□□ 0.48
NUP54-201ENST00000264883 CCDC136Q96JN2 1154 aa18.05■□□□□ 0.48
NUP54-201ENST00000264883 ATP1B4Q9UN42 357 aaPredicted RBP18.05■□□□□ 0.48
NUP54-201ENST00000264883 PAK3O75914 559 aaPredicted RBP18.05■□□□□ 0.48
NUP54-201ENST00000264883 CCDC18Q5T9S5 1454 aa18.05■□□□□ 0.48
NUP54-201ENST00000264883 HNRNPUQ00839 825 aaKnown RBP eCLIP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms