RNA–Protein interactions for RNA: ENST00000264723.8

CSPG5-201, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CSPG5, Length 4,080 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-201ENST00000264723 SENP3-EIF4A1A0A087X0R7 540 aa27.59■■■□□ 2.01
CSPG5-201ENST00000264723 TDRD9Q8NDG6 1382 aaKnown RBP27.58■■■□□ 2.01
CSPG5-201ENST00000264723 SLC4A1APQ9BWU0 796 aaKnown RBP27.57■■■□□ 2
CSPG5-201ENST00000264723 DHX57Q6P158 1386 aaKnown RBP27.56■■■□□ 2
CSPG5-201ENST00000264723 FAM9BQ8IZU0 186 aa27.54■■■□□ 2
CSPG5-201ENST00000264723 CLSPNQ9HAW4 1339 aa27.52■■■□□ 2
CSPG5-201ENST00000264723 RAB3GAP2Q9H2M9 1393 aa27.5■■□□□ 1.99
CSPG5-201ENST00000264723 CADPSQ9ULU8 1353 aa27.5■■□□□ 1.99
CSPG5-201ENST00000264723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.42■■□□□ 1.98
CSPG5-201ENST00000264723 SYNJ1O43426 1573 aa27.42■■□□□ 1.98
CSPG5-201ENST00000264723 KDM2AQ9Y2K7 1162 aa27.35■■□□□ 1.97
CSPG5-201ENST00000264723 KIF21BO75037 1637 aa27.35■■□□□ 1.97
CSPG5-201ENST00000264723 TSPY4P0CV99 314 aa27.31■■□□□ 1.96
CSPG5-201ENST00000264723 TSPY10P0CW01 314 aa27.31■■□□□ 1.96
CSPG5-201ENST00000264723 SETD5Q9C0A6 1442 aa27.31■■□□□ 1.96
CSPG5-201ENST00000264723 EIF4G1Q04637 1599 aaKnown RBP27.29■■□□□ 1.96
CSPG5-201ENST00000264723 SALL2Q9Y467 1007 aaPredicted RBP27.28■■□□□ 1.96
CSPG5-201ENST00000264723 FOXD1Q16676 465 aa27.27■■□□□ 1.96
CSPG5-201ENST00000264723 MRS2Q9HD23 443 aa27.26■■□□□ 1.95
CSPG5-201ENST00000264723 FHAD1B1AJZ9 1412 aa27.25■■□□□ 1.95
CSPG5-201ENST00000264723 CFDP1Q9UEE9 299 aaPredicted RBP27.25■■□□□ 1.95
CSPG5-201ENST00000264723 PLEKHD1A6NEE1 506 aa27.24■■□□□ 1.95
CSPG5-201ENST00000264723 ERCC6Q03468 1493 aa27.24■■□□□ 1.95
CSPG5-201ENST00000264723 FHOD3Q2V2M9 1422 aa27.22■■□□□ 1.95
CSPG5-201ENST00000264723 ARAP1Q96P48 1450 aa27.21■■□□□ 1.95
CSPG5-201ENST00000264723 EIF4G2P78344 907 aaKnown RBP eCLIP27.2■■□□□ 1.94
CSPG5-201ENST00000264723 TSHZ2Q9NRE2 1034 aa27.18■■□□□ 1.94
CSPG5-201ENST00000264723 PPP1R15AO75807 674 aaPredicted RBP27.17■■□□□ 1.94
CSPG5-201ENST00000264723 PDS5BQ9NTI5 1447 aa27.16■■□□□ 1.94
CSPG5-201ENST00000264723 IGF1RP08069 1367 aa27.14■■□□□ 1.93
CSPG5-201ENST00000264723 NCAPD3P42695 1498 aa27.14■■□□□ 1.93
CSPG5-201ENST00000264723 FANCD2Q9BXW9 1451 aa27.14■■□□□ 1.93
CSPG5-201ENST00000264723 CHGAP10645 457 aaKnown RBP27.13■■□□□ 1.93
CSPG5-201ENST00000264723 RGL3Q3MIN7 710 aa27.11■■□□□ 1.93
CSPG5-201ENST00000264723 RAD54L2Q9Y4B4 1467 aa27.07■■□□□ 1.92
CSPG5-201ENST00000264723 PHLDB1Q86UU1 1377 aa27.05■■□□□ 1.92
CSPG5-201ENST00000264723 BICRAQ9NZM4 1560 aa27.05■■□□□ 1.92
CSPG5-201ENST00000264723 SENP3Q9H4L4 574 aaPredicted RBP27.04■■□□□ 1.92
CSPG5-201ENST00000264723 HSPA5P11021 654 aaKnown RBP27.03■■□□□ 1.92
CSPG5-201ENST00000264723 FGD5Q6ZNL6 1462 aa27.03■■□□□ 1.92
CSPG5-201ENST00000264723 ARHGAP35Q9NRY4 1499 aa27.02■■□□□ 1.92
CSPG5-201ENST00000264723 ANP32EQ9BTT0 268 aa27■■□□□ 1.91
CSPG5-201ENST00000264723 NPM1P06748 294 aaKnown RBP eCLIP26.99■■□□□ 1.91
CSPG5-201ENST00000264723 DNAJC5BQ9UF47 199 aa26.98■■□□□ 1.91
CSPG5-201ENST00000264723 PRXQ9BXM0 1461 aa26.97■■□□□ 1.91
CSPG5-201ENST00000264723 NPM2Q86SE8 214 aaKnown RBP26.97■■□□□ 1.91
CSPG5-201ENST00000264723 TMC1Q8TDI8 760 aa26.95■■□□□ 1.91
CSPG5-201ENST00000264723 RBM19Q9Y4C8 960 aaKnown RBP26.95■■□□□ 1.91
CSPG5-201ENST00000264723 B4GALNT3Q6L9W6 998 aa26.94■■□□□ 1.9
CSPG5-201ENST00000264723 TIMELESSQ9UNS1 1208 aa26.91■■□□□ 1.9
CSPG5-201ENST00000264723 FMN1Q68DA7 1419 aa26.9■■□□□ 1.9
CSPG5-201ENST00000264723 NESP48681 1621 aa26.9■■□□□ 1.9
CSPG5-201ENST00000264723 CCER2I3L3R5 266 aa26.9■■□□□ 1.9
CSPG5-201ENST00000264723 CCDC136Q96JN2 1154 aa26.87■■□□□ 1.89
CSPG5-201ENST00000264723 NBR1Q14596 966 aa26.87■■□□□ 1.89
CSPG5-201ENST00000264723 CFTRP13569 1480 aa26.87■■□□□ 1.89
CSPG5-201ENST00000264723 CUX1P39880 1505 aa26.87■■□□□ 1.89
CSPG5-201ENST00000264723 L3MBTL2Q969R5 705 aa26.86■■□□□ 1.89
CSPG5-201ENST00000264723 RRBP1Q9P2E9 1410 aaKnown RBP26.85■■□□□ 1.89
CSPG5-201ENST00000264723 MPHOSPH9Q99550 1183 aa26.84■■□□□ 1.89
CSPG5-201ENST00000264723 RTL5Q5HYW3 569 aaPredicted RBP26.83■■□□□ 1.89
CSPG5-201ENST00000264723 TOP2BQ02880 1626 aa26.82■■□□□ 1.88
CSPG5-201ENST00000264723 DAXXQ9UER7 740 aaPredicted RBP26.8■■□□□ 1.88
CSPG5-201ENST00000264723 PLPPR3Q6T4P5 718 aa26.79■■□□□ 1.88
CSPG5-201ENST00000264723 LRRC9Q6ZRR7 1453 aa26.76■■□□□ 1.88
CSPG5-201ENST00000264723 CARD11Q9BXL7 1154 aa26.76■■□□□ 1.87
CSPG5-201ENST00000264723 JPH4Q96JJ6 628 aa26.75■■□□□ 1.87
CSPG5-201ENST00000264723 UNC13AQ9UPW8 1703 aa26.74■■□□□ 1.87
CSPG5-201ENST00000264723 ERICH3Q5RHP9 1530 aa26.72■■□□□ 1.87
CSPG5-201ENST00000264723 PKD2Q13563 968 aa26.71■■□□□ 1.87
CSPG5-201ENST00000264723 ANP32AP39687 249 aaKnown RBP26.7■■□□□ 1.86
CSPG5-201ENST00000264723 AQRO60306 1485 aaKnown RBP eCLIP26.7■■□□□ 1.86
CSPG5-201ENST00000264723 GAPVD1Q14C86 1478 aa26.7■■□□□ 1.86
CSPG5-201ENST00000264723 DCAF11Q8TEB1 546 aa26.69■■□□□ 1.86
CSPG5-201ENST00000264723 PPP4R2Q9NY27 417 aa26.66■■□□□ 1.86
CSPG5-201ENST00000264723 STAG3Q9UJ98 1225 aa26.66■■□□□ 1.86
CSPG5-201ENST00000264723 BCL11AQ9H165 835 aa26.64■■□□□ 1.85
CSPG5-201ENST00000264723 CCDC18Q5T9S5 1454 aa26.63■■□□□ 1.85
CSPG5-201ENST00000264723 HNRNPMP52272 730 aaKnown RBP eCLIP26.63■■□□□ 1.85
CSPG5-201ENST00000264723 WDR97A6NE52 1622 aa26.62■■□□□ 1.85
CSPG5-201ENST00000264723 CC2D2AQ9P2K1 1620 aa26.62■■□□□ 1.85
CSPG5-201ENST00000264723 ZNF644Q9H582 1327 aaPredicted RBP26.62■■□□□ 1.85
CSPG5-201ENST00000264723 CARMIL2Q6F5E8 1435 aa26.58■■□□□ 1.85
CSPG5-201ENST00000264723 FGD6Q6ZV73 1430 aa26.58■■□□□ 1.85
CSPG5-201ENST00000264723 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
CSPG5-201ENST00000264723 CANXP27824 592 aaKnown RBP26.55■■□□□ 1.84
CSPG5-201ENST00000264723 CCDC184Q52MB2 194 aa26.55■■□□□ 1.84
CSPG5-201ENST00000264723 ESF1Q9H501 851 aaKnown RBP26.53■■□□□ 1.84
CSPG5-201ENST00000264723 WASHC2AQ641Q2 1341 aa26.52■■□□□ 1.84
CSPG5-201ENST00000264723 NUP155O75694 1391 aa26.52■■□□□ 1.84
CSPG5-201ENST00000264723 PRKRIP1Q9H875 184 aaPredicted RBP26.5■■□□□ 1.83
CSPG5-201ENST00000264723 POLA1P09884 1462 aaPredicted RBP26.5■■□□□ 1.83
CSPG5-201ENST00000264723 CC2D1BQ5T0F9 858 aaKnown RBP26.49■■□□□ 1.83
CSPG5-201ENST00000264723 ZBTB47Q9UFB7 747 aaPredicted RBP26.49■■□□□ 1.83
CSPG5-201ENST00000264723 PEG3Q9GZU2 1588 aa26.49■■□□□ 1.83
CSPG5-201ENST00000264723 TIAM1Q13009 1591 aa26.47■■□□□ 1.83
CSPG5-201ENST00000264723 TOPBP1Q92547 1522 aa26.47■■□□□ 1.83
CSPG5-201ENST00000264723 WDR43Q15061 677 aaKnown RBP eCLIP26.43■■□□□ 1.82
CSPG5-201ENST00000264723 CASKIN1Q8WXD9 1431 aa26.4■■□□□ 1.82
CSPG5-201ENST00000264723 UACAQ9BZF9 1416 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms