RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 FAM9BQ8IZU0 186 aa22.79■■□□□ 1.24
PHRF1-201ENST00000264555 EIF4G2P78344 907 aaKnown RBP eCLIP22.79■■□□□ 1.243e-7■■■□□ 15.9
PHRF1-201ENST00000264555 HIRIP3Q9BW71 556 aaPredicted RBP22.76■■□□□ 1.23
PHRF1-201ENST00000264555 ATAD2BQ9ULI0 1458 aa22.74■■□□□ 1.23
PHRF1-201ENST00000264555 CANXP27824 592 aaKnown RBP22.74■■□□□ 1.23
PHRF1-201ENST00000264555 SCAF1Q9H7N4 1312 aaKnown RBP22.74■■□□□ 1.23
PHRF1-201ENST00000264555 CHGAP10645 457 aaKnown RBP22.73■■□□□ 1.23
PHRF1-201ENST00000264555 KDM2AQ9Y2K7 1162 aa22.72■■□□□ 1.23
PHRF1-201ENST00000264555 CFDP1Q9UEE9 299 aaPredicted RBP22.72■■□□□ 1.23
PHRF1-201ENST00000264555 NEFMP07197 916 aa22.71■■□□□ 1.23
PHRF1-201ENST00000264555 TMC1Q8TDI8 760 aa22.69■■□□□ 1.22
PHRF1-201ENST00000264555 MRS2Q9HD23 443 aa22.68■■□□□ 1.22
PHRF1-201ENST00000264555 ERCC6Q03468 1493 aa22.64■■□□□ 1.22
PHRF1-201ENST00000264555 KANK4Q5T7N3 995 aaPredicted RBP22.63■■□□□ 1.21
PHRF1-201ENST00000264555 SIN3AQ96ST3 1273 aa22.62■■□□□ 1.21
PHRF1-201ENST00000264555 ESF1Q9H501 851 aaKnown RBP22.62■■□□□ 1.21
PHRF1-201ENST00000264555 CADPSQ9ULU8 1353 aa22.61■■□□□ 1.21
PHRF1-201ENST00000264555 KCNH8Q96L42 1107 aa22.61■■□□□ 1.21
PHRF1-201ENST00000264555 PDS5BQ9NTI5 1447 aa22.6■■□□□ 1.21
PHRF1-201ENST00000264555 ZBTB47Q9UFB7 747 aaPredicted RBP22.59■■□□□ 1.21
PHRF1-201ENST00000264555 STAG3Q9UJ98 1225 aa22.59■■□□□ 1.21
PHRF1-201ENST00000264555 EIF4G1Q04637 1599 aaKnown RBP22.59■■□□□ 1.21
PHRF1-201ENST00000264555 TIMELESSQ9UNS1 1208 aa22.58■■□□□ 1.21
PHRF1-201ENST00000264555 ANP32AP39687 249 aaKnown RBP22.56■■□□□ 1.2
PHRF1-201ENST00000264555 SETD5Q9C0A6 1442 aa22.55■■□□□ 1.2
PHRF1-201ENST00000264555 ARHGAP35Q9NRY4 1499 aa22.54■■□□□ 1.2
PHRF1-201ENST00000264555 RAPGEF2Q9Y4G8 1499 aa22.53■■□□□ 1.2
PHRF1-201ENST00000264555 SALL2Q9Y467 1007 aaPredicted RBP22.51■■□□□ 1.19
PHRF1-201ENST00000264555 FMN1Q68DA7 1419 aa22.49■■□□□ 1.19
PHRF1-201ENST00000264555 RUSC2Q8N2Y8 1516 aa22.49■■□□□ 1.19
PHRF1-201ENST00000264555 TDRD9Q8NDG6 1382 aaKnown RBP22.48■■□□□ 1.19
PHRF1-201ENST00000264555 WDR43Q15061 677 aaKnown RBP eCLIP22.47■■□□□ 1.19
PHRF1-201ENST00000264555 RGL3Q3MIN7 710 aa22.44■■□□□ 1.18
PHRF1-201ENST00000264555 CCDC136Q96JN2 1154 aa22.44■■□□□ 1.18
PHRF1-201ENST00000264555 CARD11Q9BXL7 1154 aa22.41■■□□□ 1.18
PHRF1-201ENST00000264555 RAB3GAP2Q9H2M9 1393 aa22.39■■□□□ 1.17
PHRF1-201ENST00000264555 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.39■■□□□ 1.17
PHRF1-201ENST00000264555 SLC24A1O60721 1099 aa22.38■■□□□ 1.17
PHRF1-201ENST00000264555 NPM2Q86SE8 214 aaKnown RBP22.37■■□□□ 1.17
PHRF1-201ENST00000264555 IRX6P78412 446 aaPredicted RBP22.33■■□□□ 1.17
PHRF1-201ENST00000264555 CDCA8Q53HL2 280 aa22.32■■□□□ 1.16
PHRF1-201ENST00000264555 CARMIL2Q6F5E8 1435 aa22.32■■□□□ 1.16
PHRF1-201ENST00000264555 FHOD3Q2V2M9 1422 aa22.31■■□□□ 1.16
PHRF1-201ENST00000264555 FANCD2Q9BXW9 1451 aa22.29■■□□□ 1.16
PHRF1-201ENST00000264555 BCL11AQ9H165 835 aa22.29■■□□□ 1.16
PHRF1-201ENST00000264555 NCAPD3P42695 1498 aa22.24■■□□□ 1.15
PHRF1-201ENST00000264555 KNSTRNQ9Y448 316 aa22.23■■□□□ 1.15
PHRF1-201ENST00000264555 CCER2I3L3R5 266 aa22.23■■□□□ 1.15
PHRF1-201ENST00000264555 SUPT16HQ9Y5B9 1047 aaKnown RBP22.2■■□□□ 1.14
PHRF1-201ENST00000264555 UPF2Q9HAU5 1272 aaKnown RBP22.2■■□□□ 1.14
PHRF1-201ENST00000264555 MPHOSPH9Q99550 1183 aa22.19■■□□□ 1.14
PHRF1-201ENST00000264555 DCAF11Q8TEB1 546 aa22.19■■□□□ 1.14
PHRF1-201ENST00000264555 HSPA5P11021 654 aaKnown RBP22.18■■□□□ 1.14
PHRF1-201ENST00000264555 PLPPR3Q6T4P5 718 aa22.17■■□□□ 1.14
PHRF1-201ENST00000264555 IGF1RP08069 1367 aa22.17■■□□□ 1.14
PHRF1-201ENST00000264555 PPP1R15AO75807 674 aaPredicted RBP22.16■■□□□ 1.14
PHRF1-201ENST00000264555 PKD2Q13563 968 aa22.16■■□□□ 1.14
PHRF1-201ENST00000264555 DHX57Q6P158 1386 aaKnown RBP22.13■■□□□ 1.13
PHRF1-201ENST00000264555 FGD5Q6ZNL6 1462 aa22.13■■□□□ 1.13
PHRF1-201ENST00000264555 FOXD1Q16676 465 aa22.12■■□□□ 1.13
PHRF1-201ENST00000264555 ANKRD30AQ9BXX3 1397 aa22.11■■□□□ 1.13
PHRF1-201ENST00000264555 CCDC18Q5T9S5 1454 aa22.11■■□□□ 1.13
PHRF1-201ENST00000264555 KANK1Q14678 1352 aa22.09■■□□□ 1.13
PHRF1-201ENST00000264555 CFAP53Q96M91 514 aa22.09■■□□□ 1.13
PHRF1-201ENST00000264555 TMF1P82094 1093 aa22.08■■□□□ 1.13
PHRF1-201ENST00000264555 NUP155O75694 1391 aa22.05■■□□□ 1.12
PHRF1-201ENST00000264555 SENP3Q9H4L4 574 aaPredicted RBP22.04■■□□□ 1.12
PHRF1-201ENST00000264555 KIF21BO75037 1637 aa22.04■■□□□ 1.12
PHRF1-201ENST00000264555 SENP3-EIF4A1A0A087X0R7 540 aa22.04■■□□□ 1.12
PHRF1-201ENST00000264555 PPP4R2Q9NY27 417 aa22.04■■□□□ 1.12
PHRF1-201ENST00000264555 JPH4Q96JJ6 628 aa22.02■■□□□ 1.12
PHRF1-201ENST00000264555 CC2D1BQ5T0F9 858 aaKnown RBP22.01■■□□□ 1.11
PHRF1-201ENST00000264555 EFCAB2Q5VUJ9 269 aa22■■□□□ 1.11
PHRF1-201ENST00000264555 HSP90AA1P07900 732 aaKnown RBP21.99■■□□□ 1.11
PHRF1-201ENST00000264555 GAPVD1Q14C86 1478 aa21.99■■□□□ 1.11
PHRF1-201ENST00000264555 RAD54L2Q9Y4B4 1467 aa21.99■■□□□ 1.11
PHRF1-201ENST00000264555 RSPH4AQ5TD94 716 aa21.98■■□□□ 1.11
PHRF1-201ENST00000264555 L3MBTL2Q969R5 705 aa21.98■■□□□ 1.11
PHRF1-201ENST00000264555 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
PHRF1-201ENST00000264555 CFTRP13569 1480 aa21.98■■□□□ 1.11
PHRF1-201ENST00000264555 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
PHRF1-201ENST00000264555 HNRNPMP52272 730 aaKnown RBP eCLIP21.92■■□□□ 1.11e-6■■■□□ 17.1
PHRF1-201ENST00000264555 POGKQ9P215 609 aa21.92■■□□□ 1.1
PHRF1-201ENST00000264555 ROCK2O75116 1388 aaKnown RBP21.91■■□□□ 1.1
PHRF1-201ENST00000264555 MYH16Q9H6N6 1097 aa21.9■■□□□ 1.1
PHRF1-201ENST00000264555 ARID4BQ4LE39 1312 aaPredicted RBP21.9■■□□□ 1.1
PHRF1-201ENST00000264555 NBR1Q14596 966 aa21.9■■□□□ 1.1
PHRF1-201ENST00000264555 NUDCQ9Y266 331 aa21.9■■□□□ 1.1
PHRF1-201ENST00000264555 HMGXB3Q12766 1538 aa21.87■■□□□ 1.09
PHRF1-201ENST00000264555 KTN1Q86UP2 1357 aaKnown RBP21.87■■□□□ 1.09
PHRF1-201ENST00000264555 DDRGK1Q96HY6 314 aa21.87■■□□□ 1.09
PHRF1-201ENST00000264555 LRRC9Q6ZRR7 1453 aa21.85■■□□□ 1.09
PHRF1-201ENST00000264555 TOP2BQ02880 1626 aa21.85■■□□□ 1.09
PHRF1-201ENST00000264555 NEUROD2Q15784 382 aa21.85■■□□□ 1.09
PHRF1-201ENST00000264555 RALBP1Q15311 655 aa21.85■■□□□ 1.09
PHRF1-201ENST00000264555 MAPK8IP3Q9UPT6 1336 aa21.84■■□□□ 1.09
PHRF1-201ENST00000264555 PPM1GO15355 546 aaPredicted RBP21.83■■□□□ 1.09
PHRF1-201ENST00000264555 FGD6Q6ZV73 1430 aa21.83■■□□□ 1.08
PHRF1-201ENST00000264555 PRXQ9BXM0 1461 aa21.82■■□□□ 1.08
PHRF1-201ENST00000264555 TNNT2P45379 298 aaPredicted RBP21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms