RNA–Protein interactions for RNA: ENST00000261366.9

LMNB1-201, Transcript of lamin B1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMNB1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-201ENST00000261366 RRBP1Q9P2E9 1410 aaKnown RBP22.64■■□□□ 1.21
LMNB1-201ENST00000261366 NEFLP07196 543 aa22.62■■□□□ 1.21
LMNB1-201ENST00000261366 CUX2O14529 1486 aa22.61■■□□□ 1.21
LMNB1-201ENST00000261366 BCL11AQ9H165 835 aa22.6■■□□□ 1.21
LMNB1-201ENST00000261366 ERICH3Q5RHP9 1530 aa22.58■■□□□ 1.21
LMNB1-201ENST00000261366 DNAJC5BQ9UF47 199 aa22.58■■□□□ 1.2
LMNB1-201ENST00000261366 FANCD2Q9BXW9 1451 aa22.58■■□□□ 1.2
LMNB1-201ENST00000261366 NESP48681 1621 aa22.57■■□□□ 1.2
LMNB1-201ENST00000261366 RBM19Q9Y4C8 960 aaKnown RBP22.57■■□□□ 1.2
LMNB1-201ENST00000261366 FGD5Q6ZNL6 1462 aa22.56■■□□□ 1.2
LMNB1-201ENST00000261366 IGF1RP08069 1367 aa22.55■■□□□ 1.2
LMNB1-201ENST00000261366 P3H3Q8IVL6 736 aa22.54■■□□□ 1.2
LMNB1-201ENST00000261366 PRDM2Q13029 1718 aa22.53■■□□□ 1.2
LMNB1-201ENST00000261366 MAPKBP1O60336 1514 aa22.51■■□□□ 1.19
LMNB1-201ENST00000261366 WDR97A6NE52 1622 aa22.51■■□□□ 1.19
LMNB1-201ENST00000261366 ARHGAP35Q9NRY4 1499 aa22.5■■□□□ 1.19
LMNB1-201ENST00000261366 IRX6P78412 446 aaPredicted RBP22.49■■□□□ 1.19
LMNB1-201ENST00000261366 ANP32CO43423 234 aa22.47■■□□□ 1.19
LMNB1-201ENST00000261366 PPP1R15AO75807 674 aaPredicted RBP22.45■■□□□ 1.18
LMNB1-201ENST00000261366 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
LMNB1-201ENST00000261366 SETD5Q9C0A6 1442 aa22.45■■□□□ 1.18
LMNB1-201ENST00000261366 RAD54L2Q9Y4B4 1467 aa22.43■■□□□ 1.18
LMNB1-201ENST00000261366 PHLDB1Q86UU1 1377 aa22.4■■□□□ 1.18
LMNB1-201ENST00000261366 TOPBP1Q92547 1522 aa22.36■■□□□ 1.17
LMNB1-201ENST00000261366 POLA1P09884 1462 aaPredicted RBP22.35■■□□□ 1.17
LMNB1-201ENST00000261366 MSH5O43196 834 aa22.33■■□□□ 1.17
LMNB1-201ENST00000261366 DNMBPQ6XZF7 1577 aa22.32■■□□□ 1.16
LMNB1-201ENST00000261366 HNRNPUQ00839 825 aaKnown RBP eCLIP22.32■■□□□ 1.16
LMNB1-201ENST00000261366 CCER2I3L3R5 266 aa22.28■■□□□ 1.16
LMNB1-201ENST00000261366 TIAM1Q13009 1591 aa22.25■■□□□ 1.15
LMNB1-201ENST00000261366 LRRC9Q6ZRR7 1453 aa22.25■■□□□ 1.15
LMNB1-201ENST00000261366 URB2Q14146 1524 aaKnown RBP22.25■■□□□ 1.15
LMNB1-201ENST00000261366 ABCA10Q8WWZ4 1543 aa22.25■■□□□ 1.15
LMNB1-201ENST00000261366 LAMC3Q9Y6N6 1575 aa22.24■■□□□ 1.15
LMNB1-201ENST00000261366 TONSLQ96HA7 1378 aa22.24■■□□□ 1.15
LMNB1-201ENST00000261366 TDRD9Q8NDG6 1382 aaKnown RBP22.24■■□□□ 1.15
LMNB1-201ENST00000261366 ERICH6Q7L0X2 663 aa22.23■■□□□ 1.15
LMNB1-201ENST00000261366 PDS5BQ9NTI5 1447 aa22.22■■□□□ 1.15
LMNB1-201ENST00000261366 CDK11AQ9UQ88 783 aaPredicted RBP22.18■■□□□ 1.14
LMNB1-201ENST00000261366 FHOD3Q2V2M9 1422 aa22.13■■□□□ 1.13
LMNB1-201ENST00000261366 TIMELESSQ9UNS1 1208 aa22.12■■□□□ 1.13
LMNB1-201ENST00000261366 CNGB1Q14028 1251 aaPredicted RBP22.1■■□□□ 1.13
LMNB1-201ENST00000261366 CCDC184Q52MB2 194 aa22.07■■□□□ 1.12
LMNB1-201ENST00000261366 FAM9BQ8IZU0 186 aa22.06■■□□□ 1.12
LMNB1-201ENST00000261366 PCF11O94913 1555 aaKnown RBP22.05■■□□□ 1.12
LMNB1-201ENST00000261366 GAPVD1Q14C86 1478 aa22.05■■□□□ 1.12
LMNB1-201ENST00000261366 FHAD1B1AJZ9 1412 aa22.04■■□□□ 1.12
LMNB1-201ENST00000261366 B4GALNT3Q6L9W6 998 aa22.04■■□□□ 1.12
LMNB1-201ENST00000261366 KIF21AQ7Z4S6 1674 aa22.04■■□□□ 1.12
LMNB1-201ENST00000261366 CHIC2Q9UKJ5 165 aa22.02■■□□□ 1.12
LMNB1-201ENST00000261366 SENP3-EIF4A1A0A087X0R7 540 aa22.01■■□□□ 1.11
LMNB1-201ENST00000261366 MAP3K1Q13233 1512 aa22■■□□□ 1.11
LMNB1-201ENST00000261366 HSPA5P11021 654 aaKnown RBP22■■□□□ 1.11
LMNB1-201ENST00000261366 CCDC18Q5T9S5 1454 aa21.99■■□□□ 1.11
LMNB1-201ENST00000261366 RRP7BPQ9NSQ0 103 aa21.99■■□□□ 1.11
LMNB1-201ENST00000261366 CUL7Q14999 1698 aa21.99■■□□□ 1.11
LMNB1-201ENST00000261366 WASHC2AQ641Q2 1341 aa21.99■■□□□ 1.11
LMNB1-201ENST00000261366 FANCIQ9NVI1 1328 aa21.98■■□□□ 1.11
LMNB1-201ENST00000261366 PTPRKQ15262 1439 aa21.96■■□□□ 1.11
LMNB1-201ENST00000261366 MTUS2Q5JR59 1369 aa21.95■■□□□ 1.1
LMNB1-201ENST00000261366 ABCA5Q8WWZ7 1642 aa21.94■■□□□ 1.1
LMNB1-201ENST00000261366 AQRO60306 1485 aaKnown RBP eCLIP21.93■■□□□ 1.16e-7■■■■■ 27.9
LMNB1-201ENST00000261366 FGD6Q6ZV73 1430 aa21.92■■□□□ 1.1
LMNB1-201ENST00000261366 FOXD1Q16676 465 aa21.92■■□□□ 1.1
LMNB1-201ENST00000261366 PPP4R2Q9NY27 417 aa21.92■■□□□ 1.1
LMNB1-201ENST00000261366 NBR1Q14596 966 aa21.91■■□□□ 1.1
LMNB1-201ENST00000261366 MRS2Q9HD23 443 aa21.91■■□□□ 1.1
LMNB1-201ENST00000261366 CFAP43Q8NDM7 1665 aa21.88■■□□□ 1.09
LMNB1-201ENST00000261366 UACAQ9BZF9 1416 aa21.88■■□□□ 1.09
LMNB1-201ENST00000261366 ARID3CA6NKF2 412 aa21.88■■□□□ 1.09
LMNB1-201ENST00000261366 EFCAB5A4FU69 1503 aa21.88■■□□□ 1.09
LMNB1-201ENST00000261366 TARBP1Q13395 1621 aaKnown RBP21.87■■□□□ 1.09
LMNB1-201ENST00000261366 C11orf95C9JLR9 678 aaPredicted RBP21.87■■□□□ 1.09
LMNB1-201ENST00000261366 EIF4G2P78344 907 aaKnown RBP eCLIP21.86■■□□□ 1.095e-6■■□□□ 14.3
LMNB1-201ENST00000261366 CASKIN1Q8WXD9 1431 aa21.86■■□□□ 1.09
LMNB1-201ENST00000261366 CTTNBP2Q8WZ74 1663 aa21.85■■□□□ 1.09
LMNB1-201ENST00000261366 MRC2Q9UBG0 1479 aa21.85■■□□□ 1.09
LMNB1-201ENST00000261366 POLR3GLQ9BT43 218 aa21.85■■□□□ 1.09
LMNB1-201ENST00000261366 FMN1Q68DA7 1419 aa21.84■■□□□ 1.09
LMNB1-201ENST00000261366 DEKP35659 375 aaKnown RBP21.83■■□□□ 1.09
LMNB1-201ENST00000261366 FYCO1Q9BQS8 1478 aa21.83■■□□□ 1.09
LMNB1-201ENST00000261366 HFM1A2PYH4 1435 aa21.82■■□□□ 1.08
LMNB1-201ENST00000261366 NAIPQ13075 1403 aa21.82■■□□□ 1.08
LMNB1-201ENST00000261366 PRKRIP1Q9H875 184 aaPredicted RBP21.79■■□□□ 1.08
LMNB1-201ENST00000261366 L3MBTL2Q969R5 705 aa21.79■■□□□ 1.08
LMNB1-201ENST00000261366 PTPN23Q9H3S7 1636 aa21.78■■□□□ 1.08
LMNB1-201ENST00000261366 PAK3O75914 559 aaPredicted RBP21.77■■□□□ 1.08
LMNB1-201ENST00000261366 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
LMNB1-201ENST00000261366 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.76■■□□□ 1.079e-7■■■■□ 23.3
LMNB1-201ENST00000261366 SNAPC4Q5SXM2 1469 aa21.75■■□□□ 1.07
LMNB1-201ENST00000261366 KDM5BQ9UGL1 1544 aa21.73■■□□□ 1.07
LMNB1-201ENST00000261366 CNTLNQ9NXG0 1405 aa21.72■■□□□ 1.07
LMNB1-201ENST00000261366 NCOA2Q15596 1464 aa21.72■■□□□ 1.07
LMNB1-201ENST00000261366 NOP58Q9Y2X3 529 aaKnown RBP21.72■■□□□ 1.07
LMNB1-201ENST00000261366 SAMD9Q5K651 1589 aa21.71■■□□□ 1.07
LMNB1-201ENST00000261366 GRIN2BQ13224 1484 aa21.71■■□□□ 1.07
LMNB1-201ENST00000261366 ERCC6Q03468 1493 aa21.7■■□□□ 1.06
LMNB1-201ENST00000261366 MPHOSPH9Q99550 1183 aa21.69■■□□□ 1.06
LMNB1-201ENST00000261366 ERICH6BQ5W0A0 696 aa21.69■■□□□ 1.06
LMNB1-201ENST00000261366 MYOM3Q5VTT5 1437 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms