RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TNNT2P45379 298 aaPredicted RBP17.07■□□□□ 0.32
USP40-201ENST00000251722 TNIKQ9UKE5 1360 aa17.06■□□□□ 0.32
USP40-201ENST00000251722 CFDP1Q9UEE9 299 aaPredicted RBP17.06■□□□□ 0.32
USP40-201ENST00000251722 KCNH8Q96L42 1107 aa17.05■□□□□ 0.32
USP40-201ENST00000251722 WDR43Q15061 677 aaKnown RBP eCLIP17.05■□□□□ 0.32
USP40-201ENST00000251722 PLPPR3Q6T4P5 718 aa17.04■□□□□ 0.32
USP40-201ENST00000251722 HDGFP51858 240 aaKnown RBP17.03■□□□□ 0.32
USP40-201ENST00000251722 NCLP19338 710 aaKnown RBP17.01■□□□□ 0.31
USP40-201ENST00000251722 NPM2Q86SE8 214 aaKnown RBP17.01■□□□□ 0.31
USP40-201ENST00000251722 ARID4BQ4LE39 1312 aaPredicted RBP17.01■□□□□ 0.31
USP40-201ENST00000251722 CARMIL2Q6F5E8 1435 aa17.01■□□□□ 0.31
USP40-201ENST00000251722 CEP162Q5TB80 1403 aa17■□□□□ 0.31
USP40-201ENST00000251722 UPF2Q9HAU5 1272 aaKnown RBP16.99■□□□□ 0.31
USP40-201ENST00000251722 KANK1Q14678 1352 aa16.99■□□□□ 0.31
USP40-201ENST00000251722 TMC1Q8TDI8 760 aa16.98■□□□□ 0.31
USP40-201ENST00000251722 ERICH6BQ5W0A0 696 aa16.97■□□□□ 0.31
USP40-201ENST00000251722 EIF4G2P78344 907 aaKnown RBP eCLIP16.96■□□□□ 0.31
USP40-201ENST00000251722 C14orf37Q86TY3 774 aa16.95■□□□□ 0.3
USP40-201ENST00000251722 CCNB3Q8WWL7 1395 aa16.94■□□□□ 0.3
USP40-201ENST00000251722 CARMIL1Q5VZK9 1371 aa16.94■□□□□ 0.3
USP40-201ENST00000251722 CFAP53Q96M91 514 aa16.94■□□□□ 0.3
USP40-201ENST00000251722 CUX2O14529 1486 aa16.91■□□□□ 0.3
USP40-201ENST00000251722 KDM2AQ9Y2K7 1162 aa16.91■□□□□ 0.3
USP40-201ENST00000251722 ANP32BQ92688 251 aaKnown RBP16.9■□□□□ 0.3
USP40-201ENST00000251722 MYH16Q9H6N6 1097 aa16.89■□□□□ 0.29
USP40-201ENST00000251722 RRP7BPQ9NSQ0 103 aa16.88■□□□□ 0.29
USP40-201ENST00000251722 NBR1Q14596 966 aa16.87■□□□□ 0.29
USP40-201ENST00000251722 CDK11BP21127 795 aaKnown RBP16.86■□□□□ 0.29
USP40-201ENST00000251722 HAP1P54257 671 aaPredicted RBP16.85■□□□□ 0.29
USP40-201ENST00000251722 EIF4G1Q04637 1599 aaKnown RBP16.85■□□□□ 0.29
USP40-201ENST00000251722 TRIM44Q96DX7 344 aaPredicted RBP16.83■□□□□ 0.28
USP40-201ENST00000251722 HNRNPUQ00839 825 aaKnown RBP eCLIP16.83■□□□□ 0.28
USP40-201ENST00000251722 ABCC8Q09428 1581 aa16.83■□□□□ 0.28
USP40-201ENST00000251722 HSP90AA1P07900 732 aaKnown RBP16.81■□□□□ 0.28
USP40-201ENST00000251722 PNNQ9H307 717 aaKnown RBP16.8■□□□□ 0.28
USP40-201ENST00000251722 CECR2Q9BXF3 1484 aa16.8■□□□□ 0.28
USP40-201ENST00000251722 DDX10Q13206 875 aaKnown RBP16.8■□□□□ 0.28
USP40-201ENST00000251722 SOGA1O94964 1423 aa16.8■□□□□ 0.28
USP40-201ENST00000251722 MRS2Q9HD23 443 aa16.79■□□□□ 0.28
USP40-201ENST00000251722 FMN1Q68DA7 1419 aa16.79■□□□□ 0.28
USP40-201ENST00000251722 TOP2AP11388 1531 aaKnown RBP16.79■□□□□ 0.28
USP40-201ENST00000251722 FAM9BQ8IZU0 186 aa16.79■□□□□ 0.28
USP40-201ENST00000251722 TIMELESSQ9UNS1 1208 aa16.78■□□□□ 0.28
USP40-201ENST00000251722 KNSTRNQ9Y448 316 aa16.78■□□□□ 0.28
USP40-201ENST00000251722 NUDCQ9Y266 331 aa16.77■□□□□ 0.28
USP40-201ENST00000251722 PODXL2Q9NZ53 605 aa16.76■□□□□ 0.27
USP40-201ENST00000251722 CADPSQ9ULU8 1353 aa16.76■□□□□ 0.27
USP40-201ENST00000251722 POGKQ9P215 609 aa16.76■□□□□ 0.27
USP40-201ENST00000251722 FKBP8Q14318 412 aa16.76■□□□□ 0.27
USP40-201ENST00000251722 CHMP4BQ9H444 224 aaKnown RBP16.76■□□□□ 0.27
USP40-201ENST00000251722 CCDC88BA6NC98 1476 aa16.74■□□□□ 0.27
USP40-201ENST00000251722 DEKP35659 375 aaKnown RBP16.74■□□□□ 0.27
USP40-201ENST00000251722 TRHP20396 242 aaPredicted RBP16.74■□□□□ 0.27
USP40-201ENST00000251722 RSPH4AQ5TD94 716 aa16.72■□□□□ 0.27
USP40-201ENST00000251722 CARD11Q9BXL7 1154 aa16.71■□□□□ 0.27
USP40-201ENST00000251722 EFCAB2Q5VUJ9 269 aa16.71■□□□□ 0.26
USP40-201ENST00000251722 ARHGAP35Q9NRY4 1499 aa16.7■□□□□ 0.26
USP40-201ENST00000251722 MROH2BQ7Z745 1585 aa16.69■□□□□ 0.26
USP40-201ENST00000251722 RGL3Q3MIN7 710 aa16.68■□□□□ 0.26
USP40-201ENST00000251722 PKNOX2Q96KN3 472 aa16.68■□□□□ 0.26
USP40-201ENST00000251722 ZBTB7CA1YPR0 619 aa16.68■□□□□ 0.26
USP40-201ENST00000251722 MAPK8IP3Q9UPT6 1336 aa16.67■□□□□ 0.26
USP40-201ENST00000251722 MS4A1P11836 297 aa16.66■□□□□ 0.26
USP40-201ENST00000251722 A0A0G2JS52 829 aa16.66■□□□□ 0.26
USP40-201ENST00000251722 CCDC136Q96JN2 1154 aa16.66■□□□□ 0.26
USP40-201ENST00000251722 RTN4Q9NQC3 1192 aaKnown RBP16.66■□□□□ 0.26
USP40-201ENST00000251722 NAP1L5Q96NT1 182 aaPredicted RBP16.65■□□□□ 0.26
USP40-201ENST00000251722 TMF1P82094 1093 aa16.63■□□□□ 0.25
USP40-201ENST00000251722 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
USP40-201ENST00000251722 ANKRD30AQ9BXX3 1397 aa16.61■□□□□ 0.25
USP40-201ENST00000251722 ATAD2BQ9ULI0 1458 aa16.6■□□□□ 0.25
USP40-201ENST00000251722 RAPGEF2Q9Y4G8 1499 aa16.6■□□□□ 0.25
USP40-201ENST00000251722 PPM1GO15355 546 aaPredicted RBP16.6■□□□□ 0.25
USP40-201ENST00000251722 CHMP4AQ9BY43 222 aa16.59■□□□□ 0.25
USP40-201ENST00000251722 CASC1Q6TDU7 716 aa16.59■□□□□ 0.25
USP40-201ENST00000251722 CCDC18Q5T9S5 1454 aa16.57■□□□□ 0.24
USP40-201ENST00000251722 SALL2Q9Y467 1007 aaPredicted RBP16.55■□□□□ 0.24
USP40-201ENST00000251722 SMARCA4P51532 1647 aa16.55■□□□□ 0.24
USP40-201ENST00000251722 RSPH6AQ9H0K4 717 aa16.54■□□□□ 0.24
USP40-201ENST00000251722 EIF3AQ14152 1382 aaKnown RBP16.54■□□□□ 0.24
USP40-201ENST00000251722 TDRD9Q8NDG6 1382 aaKnown RBP16.53■□□□□ 0.24
USP40-201ENST00000251722 SETD5Q9C0A6 1442 aa16.53■□□□□ 0.24
USP40-201ENST00000251722 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.53■□□□□ 0.24
USP40-201ENST00000251722 BECN1Q14457 450 aa16.52■□□□□ 0.23
USP40-201ENST00000251722 HDGFL2Q7Z4V5 671 aaPredicted RBP16.51■□□□□ 0.23
USP40-201ENST00000251722 DDRGK1Q96HY6 314 aa16.51■□□□□ 0.23
USP40-201ENST00000251722 VSIG10Q8N0Z9 540 aa16.5■□□□□ 0.23
USP40-201ENST00000251722 LMOD2Q6P5Q4 547 aa16.5■□□□□ 0.23
USP40-201ENST00000251722 FANCD2Q9BXW9 1451 aa16.49■□□□□ 0.23
USP40-201ENST00000251722 FTSJ3Q8IY81 847 aaKnown RBP16.49■□□□□ 0.23
USP40-201ENST00000251722 NOP58Q9Y2X3 529 aaKnown RBP16.49■□□□□ 0.23
USP40-201ENST00000251722 EID1Q9Y6B2 187 aa16.49■□□□□ 0.23
USP40-201ENST00000251722 CFAP44Q96MT7 982 aa16.48■□□□□ 0.23
USP40-201ENST00000251722 CALD1Q05682 793 aaKnown RBP16.46■□□□□ 0.23
USP40-201ENST00000251722 GGT6Q6P531 493 aa16.46■□□□□ 0.23
USP40-201ENST00000251722 MLECQ14165 292 aa16.45■□□□□ 0.22
USP40-201ENST00000251722 DCAF11Q8TEB1 546 aa16.45■□□□□ 0.22
USP40-201ENST00000251722 SRPK2P78362 688 aaKnown RBP16.45■□□□□ 0.22
USP40-201ENST00000251722 NPHP1O15259 732 aa16.44■□□□□ 0.22
USP40-201ENST00000251722 SPAG9O60271 1321 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms