RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 DCAF8L2P0C7V8 631 aa22.08■■□□□ 1.13
USP40-201ENST00000251722 NISCHQ9Y2I1 1504 aa21.85■■□□□ 1.09
USP40-201ENST00000251722 MYT1Q01538 1121 aa21.33■■□□□ 1.01
USP40-201ENST00000251722 PELP1Q8IZL8 1130 aaKnown RBP21.16■□□□□ 0.98
USP40-201ENST00000251722 SUPT5HO00267 1087 aaKnown RBP20.61■□□□□ 0.89
USP40-201ENST00000251722 FAM9AQ8IZU1 332 aaPredicted RBP20.42■□□□□ 0.86
USP40-201ENST00000251722 SHROOM4Q9ULL8 1493 aa20.29■□□□□ 0.84
USP40-201ENST00000251722 APLP2Q06481 763 aa20.13■□□□□ 0.81
USP40-201ENST00000251722 TTBK1Q5TCY1 1321 aaPredicted RBP19.75■□□□□ 0.75
USP40-201ENST00000251722 EHMT2Q96KQ7 1210 aa19.51■□□□□ 0.71
USP40-201ENST00000251722 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
USP40-201ENST00000251722 CENPBP07199 599 aaPredicted RBP19.35■□□□□ 0.69
USP40-201ENST00000251722 ERICH6Q7L0X2 663 aa19.34■□□□□ 0.69
USP40-201ENST00000251722 ZEB1P37275 1124 aaPredicted RBP19.2■□□□□ 0.66
USP40-201ENST00000251722 UBTFP17480 764 aaKnown RBP19.19■□□□□ 0.66
USP40-201ENST00000251722 CCER1Q8TC90 406 aaPredicted RBP19.18■□□□□ 0.66
USP40-201ENST00000251722 ATP1B4Q9UN42 357 aaPredicted RBP19.16■□□□□ 0.66
USP40-201ENST00000251722 RANGAP1P46060 587 aaPredicted RBP19■□□□□ 0.63
USP40-201ENST00000251722 PCGF6Q9BYE7 350 aa18.85■□□□□ 0.61
USP40-201ENST00000251722 ABCC9O60706 1549 aa18.81■□□□□ 0.6
USP40-201ENST00000251722 YTHDC1Q96MU7 727 aaKnown RBP18.74■□□□□ 0.59
USP40-201ENST00000251722 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.72■□□□□ 0.59
USP40-201ENST00000251722 HNRNPUL2Q1KMD3 747 aaKnown RBP18.72■□□□□ 0.59
USP40-201ENST00000251722 MYT1LQ9UL68 1186 aa18.71■□□□□ 0.59
USP40-201ENST00000251722 HRCP23327 699 aa18.58■□□□□ 0.57
USP40-201ENST00000251722 NEFLP07196 543 aa18.54■□□□□ 0.56
USP40-201ENST00000251722 TRIM26Q12899 539 aaPredicted RBP18.48■□□□□ 0.55
USP40-201ENST00000251722 PABPN1Q86U42 306 aaKnown RBP eCLIP18.48■□□□□ 0.55
USP40-201ENST00000251722 CCDC180Q9P1Z9 1646 aa18.33■□□□□ 0.53
USP40-201ENST00000251722 CHIC1Q5VXU3 224 aa18.32■□□□□ 0.52
USP40-201ENST00000251722 ITGAEP38570 1179 aa18.25■□□□□ 0.51
USP40-201ENST00000251722 GLIPR1L2Q4G1C9 344 aa18.17■□□□□ 0.5
USP40-201ENST00000251722 RTL5Q5HYW3 569 aaPredicted RBP18.13■□□□□ 0.49
USP40-201ENST00000251722 CDK11AQ9UQ88 783 aaPredicted RBP18.09■□□□□ 0.49
USP40-201ENST00000251722 FBLN2P98095 1184 aa18.08■□□□□ 0.49
USP40-201ENST00000251722 POLR3GLQ9BT43 218 aa18.08■□□□□ 0.49
USP40-201ENST00000251722 FAM50AQ14320 339 aaKnown RBP18.08■□□□□ 0.48
USP40-201ENST00000251722 ZCCHC6Q5VYS8 1495 aaKnown RBP18.07■□□□□ 0.48
USP40-201ENST00000251722 PPARGC1BQ86YN6 1023 aaKnown RBP18.07■□□□□ 0.48
USP40-201ENST00000251722 SCRIBQ14160 1630 aa18.07■□□□□ 0.48
USP40-201ENST00000251722 RB1CC1Q8TDY2 1594 aa18.06■□□□□ 0.48
USP40-201ENST00000251722 TRIM52Q96A61 297 aa18.03■□□□□ 0.48
USP40-201ENST00000251722 DAXXQ9UER7 740 aaPredicted RBP18■□□□□ 0.47
USP40-201ENST00000251722 SLC4A1APQ9BWU0 796 aaKnown RBP17.98■□□□□ 0.47
USP40-201ENST00000251722 LOC105371045A0A1W2PR82 267 aa17.96■□□□□ 0.47
USP40-201ENST00000251722 NPM1P06748 294 aaKnown RBP eCLIP17.92■□□□□ 0.46
USP40-201ENST00000251722 GTF3C3Q9Y5Q9 886 aa17.92■□□□□ 0.46
USP40-201ENST00000251722 CSRNP3Q8WYN3 585 aa17.91■□□□□ 0.46
USP40-201ENST00000251722 NACADO15069 1562 aa17.88■□□□□ 0.45
USP40-201ENST00000251722 ESF1Q9H501 851 aaKnown RBP17.85■□□□□ 0.45
USP40-201ENST00000251722 ACIN1Q9UKV3 1341 aaKnown RBP17.78■□□□□ 0.44
USP40-201ENST00000251722 BCL11AQ9H165 835 aa17.77■□□□□ 0.44
USP40-201ENST00000251722 NEFMP07197 916 aa17.76■□□□□ 0.43
USP40-201ENST00000251722 EIF5BO60841 1220 aaKnown RBP17.75■□□□□ 0.43
USP40-201ENST00000251722 BCANQ96GW7 911 aa17.69■□□□□ 0.42
USP40-201ENST00000251722 ZBTB47Q9UFB7 747 aaPredicted RBP17.66■□□□□ 0.42
USP40-201ENST00000251722 CLSPNQ9HAW4 1339 aa17.65■□□□□ 0.42
USP40-201ENST00000251722 ANP32CO43423 234 aa17.64■□□□□ 0.41
USP40-201ENST00000251722 NEUROD1Q13562 356 aa17.64■□□□□ 0.41
USP40-201ENST00000251722 SLC24A1O60721 1099 aa17.61■□□□□ 0.41
USP40-201ENST00000251722 ZNF777Q9ULD5 760 aaPredicted RBP17.6■□□□□ 0.41
USP40-201ENST00000251722 EEA1Q15075 1411 aa17.59■□□□□ 0.41
USP40-201ENST00000251722 P3H3Q8IVL6 736 aa17.59■□□□□ 0.41
USP40-201ENST00000251722 ZNF326Q5BKZ1 582 aaKnown RBP17.58■□□□□ 0.41
USP40-201ENST00000251722 CHMP7Q8WUX9 453 aaPredicted RBP17.58■□□□□ 0.41
USP40-201ENST00000251722 STAG3Q9UJ98 1225 aa17.56■□□□□ 0.4
USP40-201ENST00000251722 DIEXFQ68CQ4 756 aaKnown RBP17.56■□□□□ 0.4
USP40-201ENST00000251722 ANP32EQ9BTT0 268 aa17.54■□□□□ 0.4
USP40-201ENST00000251722 CNGB1Q14028 1251 aaPredicted RBP17.54■□□□□ 0.4
USP40-201ENST00000251722 DCAF1Q9Y4B6 1507 aa17.53■□□□□ 0.4
USP40-201ENST00000251722 ZNF316A6NFI3 1004 aaPredicted RBP17.52■□□□□ 0.39
USP40-201ENST00000251722 BAZ1BQ9UIG0 1483 aaKnown RBP17.52■□□□□ 0.39
USP40-201ENST00000251722 TSPY4P0CV99 314 aa17.48■□□□□ 0.39
USP40-201ENST00000251722 TSPY10P0CW01 314 aa17.48■□□□□ 0.39
USP40-201ENST00000251722 SCAF1Q9H7N4 1312 aaKnown RBP17.47■□□□□ 0.39
USP40-201ENST00000251722 RSF1Q96T23 1441 aaPredicted RBP17.47■□□□□ 0.39
USP40-201ENST00000251722 ARID3CA6NKF2 412 aa17.43■□□□□ 0.38
USP40-201ENST00000251722 TONSLQ96HA7 1378 aa17.41■□□□□ 0.38
USP40-201ENST00000251722 MTUS2Q5JR59 1369 aa17.41■□□□□ 0.38
USP40-201ENST00000251722 CANXP27824 592 aaKnown RBP17.4■□□□□ 0.38
USP40-201ENST00000251722 BAZ1AQ9NRL2 1556 aaPredicted RBP17.39■□□□□ 0.37
USP40-201ENST00000251722 ERCC6Q03468 1493 aa17.37■□□□□ 0.37
USP40-201ENST00000251722 CHGAP10645 457 aaKnown RBP17.35■□□□□ 0.37
USP40-201ENST00000251722 KIF27Q86VH2 1401 aa17.34■□□□□ 0.37
USP40-201ENST00000251722 PLEKHD1A6NEE1 506 aa17.33■□□□□ 0.36
USP40-201ENST00000251722 GOLGA3Q08378 1498 aa17.31■□□□□ 0.36
USP40-201ENST00000251722 WRNQ14191 1432 aaPredicted RBP eCLIP17.29■□□□□ 0.36
USP40-201ENST00000251722 CLIP1P30622 1438 aa17.28■□□□□ 0.36
USP40-201ENST00000251722 ANP32AP39687 249 aaKnown RBP17.19■□□□□ 0.34
USP40-201ENST00000251722 CEP164Q9UPV0 1460 aa17.19■□□□□ 0.34
USP40-201ENST00000251722 PRKCSHP14314 528 aaPredicted RBP17.18■□□□□ 0.34
USP40-201ENST00000251722 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
USP40-201ENST00000251722 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.17■□□□□ 0.341e-6■■■□□ 15.3
USP40-201ENST00000251722 MYO15BQ96JP2 1530 aa17.15■□□□□ 0.34
USP40-201ENST00000251722 PDS5BQ9NTI5 1447 aa17.14■□□□□ 0.33
USP40-201ENST00000251722 PPP1R15AO75807 674 aaPredicted RBP17.13■□□□□ 0.33
USP40-201ENST00000251722 CDCA8Q53HL2 280 aa17.12■□□□□ 0.33
USP40-201ENST00000251722 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.11■□□□□ 0.33
USP40-201ENST00000251722 FHAD1B1AJZ9 1412 aa17.1■□□□□ 0.33
USP40-201ENST00000251722 CHIC2Q9UKJ5 165 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 132.4 ms