RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 CARMIL1Q5VZK9 1371 aa19.81■□□□□ 0.76
GABPB1-201ENST00000220429 POLA1P09884 1462 aaPredicted RBP19.79■□□□□ 0.76
GABPB1-201ENST00000220429 RAD54L2Q9Y4B4 1467 aa19.79■□□□□ 0.76
GABPB1-201ENST00000220429 ABCA10Q8WWZ4 1543 aa19.77■□□□□ 0.76
GABPB1-201ENST00000220429 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
GABPB1-201ENST00000220429 HNRNPUL2Q1KMD3 747 aaKnown RBP19.75■□□□□ 0.75
GABPB1-201ENST00000220429 URB2Q14146 1524 aaKnown RBP19.72■□□□□ 0.75
GABPB1-201ENST00000220429 KANK4Q5T7N3 995 aaPredicted RBP19.71■□□□□ 0.75
GABPB1-201ENST00000220429 WDR97A6NE52 1622 aa19.67■□□□□ 0.74
GABPB1-201ENST00000220429 PDS5BQ9NTI5 1447 aa19.65■□□□□ 0.74
GABPB1-201ENST00000220429 KIF21AQ7Z4S6 1674 aa19.65■□□□□ 0.74
GABPB1-201ENST00000220429 CUL7Q14999 1698 aa19.64■□□□□ 0.73
GABPB1-201ENST00000220429 UBE2Q2Q8WVN8 375 aa19.63■□□□□ 0.73
GABPB1-201ENST00000220429 RBM19Q9Y4C8 960 aaKnown RBP19.59■□□□□ 0.73
GABPB1-201ENST00000220429 RRBP1Q9P2E9 1410 aaKnown RBP19.58■□□□□ 0.72
GABPB1-201ENST00000220429 ABCA5Q8WWZ7 1642 aa19.58■□□□□ 0.72
GABPB1-201ENST00000220429 CTTNBP2Q8WZ74 1663 aa19.56■□□□□ 0.72
GABPB1-201ENST00000220429 TIAM1Q13009 1591 aa19.56■□□□□ 0.72
GABPB1-201ENST00000220429 MAP3K1Q13233 1512 aa19.55■□□□□ 0.72
GABPB1-201ENST00000220429 MYT1LQ9UL68 1186 aa19.53■□□□□ 0.72
GABPB1-201ENST00000220429 TDRD9Q8NDG6 1382 aaKnown RBP19.53■□□□□ 0.72
GABPB1-201ENST00000220429 SALL2Q9Y467 1007 aaPredicted RBP19.52■□□□□ 0.72
GABPB1-201ENST00000220429 GAPVD1Q14C86 1478 aa19.51■□□□□ 0.71
GABPB1-201ENST00000220429 FHAD1B1AJZ9 1412 aa19.51■□□□□ 0.71
GABPB1-201ENST00000220429 PCF11O94913 1555 aaKnown RBP19.5■□□□□ 0.71
GABPB1-201ENST00000220429 EFCAB5A4FU69 1503 aa19.5■□□□□ 0.71
GABPB1-201ENST00000220429 MSH5O43196 834 aa19.5■□□□□ 0.71
GABPB1-201ENST00000220429 P3H3Q8IVL6 736 aa19.5■□□□□ 0.71
GABPB1-201ENST00000220429 FHOD3Q2V2M9 1422 aa19.49■□□□□ 0.71
GABPB1-201ENST00000220429 TARBP1Q13395 1621 aaKnown RBP19.49■□□□□ 0.71
GABPB1-201ENST00000220429 CCNB3Q8WWL7 1395 aa19.48■□□□□ 0.71
GABPB1-201ENST00000220429 CFAP43Q8NDM7 1665 aa19.48■□□□□ 0.71
GABPB1-201ENST00000220429 LRRC9Q6ZRR7 1453 aa19.47■□□□□ 0.71
GABPB1-201ENST00000220429 DEKP35659 375 aaKnown RBP19.45■□□□□ 0.7
GABPB1-201ENST00000220429 ERICH6BQ5W0A0 696 aa19.44■□□□□ 0.7
GABPB1-201ENST00000220429 SLC24A1O60721 1099 aa19.42■□□□□ 0.7
GABPB1-201ENST00000220429 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
GABPB1-201ENST00000220429 CCDC136Q96JN2 1154 aa19.4■□□□□ 0.7
GABPB1-201ENST00000220429 DHX57Q6P158 1386 aaKnown RBP19.4■□□□□ 0.7
GABPB1-201ENST00000220429 EIF5BO60841 1220 aaKnown RBP19.4■□□□□ 0.7
GABPB1-201ENST00000220429 AQRO60306 1485 aaKnown RBP eCLIP19.39■□□□□ 0.7
GABPB1-201ENST00000220429 CASKIN1Q8WXD9 1431 aa19.39■□□□□ 0.69
GABPB1-201ENST00000220429 MRC2Q9UBG0 1479 aa19.38■□□□□ 0.69
GABPB1-201ENST00000220429 PBRM1Q86U86 1689 aa19.38■□□□□ 0.69
GABPB1-201ENST00000220429 SAMD9Q5K651 1589 aa19.38■□□□□ 0.69
GABPB1-201ENST00000220429 PHLDB1Q86UU1 1377 aa19.37■□□□□ 0.69
GABPB1-201ENST00000220429 ATP1B4Q9UN42 357 aaPredicted RBP19.36■□□□□ 0.69
GABPB1-201ENST00000220429 BCANQ96GW7 911 aa19.35■□□□□ 0.69
GABPB1-201ENST00000220429 FMN1Q68DA7 1419 aa19.34■□□□□ 0.69
GABPB1-201ENST00000220429 ITGAEP38570 1179 aa19.33■□□□□ 0.69
GABPB1-201ENST00000220429 SNAPC4Q5SXM2 1469 aa19.33■□□□□ 0.69
GABPB1-201ENST00000220429 LRRIQ1Q96JM4 1722 aa19.29■□□□□ 0.68
GABPB1-201ENST00000220429 FANCIQ9NVI1 1328 aa19.28■□□□□ 0.68
GABPB1-201ENST00000220429 ADAMTS12P58397 1594 aa19.28■□□□□ 0.68
GABPB1-201ENST00000220429 WDR62O43379 1518 aa19.26■□□□□ 0.67
GABPB1-201ENST00000220429 RAB3GAP2Q9H2M9 1393 aa19.24■□□□□ 0.67
GABPB1-201ENST00000220429 GRIN2BQ13224 1484 aa19.23■□□□□ 0.67
GABPB1-201ENST00000220429 IFT140Q96RY7 1462 aa19.22■□□□□ 0.67
GABPB1-201ENST00000220429 FKBP8Q14318 412 aa19.22■□□□□ 0.67
GABPB1-201ENST00000220429 FAM50AQ14320 339 aaKnown RBP19.22■□□□□ 0.67
GABPB1-201ENST00000220429 ZNF608Q9ULD9 1512 aaPredicted RBP19.22■□□□□ 0.67
GABPB1-201ENST00000220429 IQGAP2Q13576 1575 aa19.2■□□□□ 0.66
GABPB1-201ENST00000220429 THOC2Q8NI27 1593 aaKnown RBP19.2■□□□□ 0.66
GABPB1-201ENST00000220429 SETD5Q9C0A6 1442 aa19.19■□□□□ 0.66
GABPB1-201ENST00000220429 MTUS2Q5JR59 1369 aa19.17■□□□□ 0.66
GABPB1-201ENST00000220429 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.16■□□□□ 0.663e-6■■□□□ 12.8
GABPB1-201ENST00000220429 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.16■□□□□ 0.66
GABPB1-201ENST00000220429 FGD6Q6ZV73 1430 aa19.15■□□□□ 0.66
GABPB1-201ENST00000220429 MAPKBP1O60336 1514 aa19.14■□□□□ 0.66
GABPB1-201ENST00000220429 PKNOX2Q96KN3 472 aa19.14■□□□□ 0.65
GABPB1-201ENST00000220429 EIF4G3O43432 1585 aaKnown RBP19.12■□□□□ 0.65
GABPB1-201ENST00000220429 SUPT6HQ7KZ85 1726 aaKnown RBP19.11■□□□□ 0.65
GABPB1-201ENST00000220429 NCOA2Q15596 1464 aa19.11■□□□□ 0.65
GABPB1-201ENST00000220429 EHBP1L1Q8N3D4 1523 aa19.11■□□□□ 0.65
GABPB1-201ENST00000220429 ERCC6Q03468 1493 aa19.11■□□□□ 0.65
GABPB1-201ENST00000220429 MAGI3Q5TCQ9 1506 aa19.09■□□□□ 0.65
GABPB1-201ENST00000220429 UGGT2Q9NYU1 1516 aa19.09■□□□□ 0.65
GABPB1-201ENST00000220429 HECW1Q76N89 1606 aa19.09■□□□□ 0.65
GABPB1-201ENST00000220429 CCDC18Q5T9S5 1454 aa19.09■□□□□ 0.65
GABPB1-201ENST00000220429 DAXXQ9UER7 740 aaPredicted RBP19.08■□□□□ 0.64
GABPB1-201ENST00000220429 MYOM3Q5VTT5 1437 aa19.06■□□□□ 0.64
GABPB1-201ENST00000220429 ARHGEF11O15085 1522 aa19.05■□□□□ 0.64
GABPB1-201ENST00000220429 KIAA0586Q9BVV6 1533 aa19.04■□□□□ 0.64
GABPB1-201ENST00000220429 GRIN2AQ12879 1464 aa19.04■□□□□ 0.64
GABPB1-201ENST00000220429 EPRSP07814 1512 aaKnown RBP19.04■□□□□ 0.64
GABPB1-201ENST00000220429 NEFLP07196 543 aa19.03■□□□□ 0.64
GABPB1-201ENST00000220429 PTPRKQ15262 1439 aa19.03■□□□□ 0.64
GABPB1-201ENST00000220429 IL27Q8NEV9 243 aa19.02■□□□□ 0.64
GABPB1-201ENST00000220429 KIAA0556O60303 1618 aa19.01■□□□□ 0.63
GABPB1-201ENST00000220429 CDK13Q14004 1512 aaKnown RBP19■□□□□ 0.63
GABPB1-201ENST00000220429 DISP1Q96F81 1524 aa19■□□□□ 0.63
GABPB1-201ENST00000220429 PTPN23Q9H3S7 1636 aa19■□□□□ 0.63
GABPB1-201ENST00000220429 RTN4Q9NQC3 1192 aaKnown RBP18.98■□□□□ 0.63
GABPB1-201ENST00000220429 MAGI1Q96QZ7 1491 aaPredicted RBP18.98■□□□□ 0.63
GABPB1-201ENST00000220429 PLEKHG5O94827 1062 aa18.97■□□□□ 0.63
GABPB1-201ENST00000220429 HFM1A2PYH4 1435 aa18.96■□□□□ 0.63
GABPB1-201ENST00000220429 SIN3AQ96ST3 1273 aa18.95■□□□□ 0.62
GABPB1-201ENST00000220429 CEP170Q5SW79 1584 aa18.93■□□□□ 0.62
GABPB1-201ENST00000220429 SYNJ2O15056 1496 aa18.93■□□□□ 0.62
GABPB1-201ENST00000220429 TCOF1Q13428 1488 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms